Wall clock time and date at job start Fri Apr 10 2020 18:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48505 * 109.47083 * 269.99798 * 3 2 1 5 5 H 1.48501 * 109.47190 * 29.99719 * 3 2 1 6 6 H 1.48494 * 109.47221 * 150.00087 * 3 2 1 7 7 C 1.38808 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99815 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00045 * 0.02562 * 7 2 1 10 10 C 1.46508 * 120.00057 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.77590 * 328.23979 * 10 9 7 12 12 C 1.55151 * 110.71893 * 204.99943 * 10 9 7 13 13 C 1.54917 * 101.58025 * 206.13557 * 12 10 9 14 14 N 1.47421 * 104.83002 * 37.01304 * 13 12 10 15 15 C 1.34779 * 125.64852 * 155.91133 * 14 13 12 16 16 O 1.21485 * 120.00110 * 179.97438 * 15 14 13 17 17 C 1.48440 * 119.99869 * 359.96877 * 15 14 13 18 18 N 1.33491 * 119.22011 * 359.72963 * 17 15 14 19 19 N 1.28913 * 122.02001 * 179.73574 * 18 17 15 20 20 C 1.33806 * 119.74683 * 0.53372 * 19 18 17 21 21 C 1.40337 * 121.77974 * 179.74246 * 20 19 18 22 22 C 1.36193 * 119.62599 * 180.02562 * 21 20 19 23 23 C 1.39444 * 121.07038 * 359.97438 * 22 21 20 24 24 C 1.36145 * 121.01186 * 359.97438 * 23 22 21 25 25 C 1.40504 * 119.56521 * 0.02562 * 24 23 22 26 26 N 1.32058 * 119.21686 * 179.97438 * 17 15 14 27 27 C 1.47021 * 108.70450 * 335.86832 * 14 13 12 28 28 H 0.97000 * 120.00349 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00077 * 359.97438 * 9 7 2 30 30 H 1.08998 * 111.00631 * 88.06394 * 12 10 9 31 31 H 1.09004 * 111.00792 * 324.20792 * 12 10 9 32 32 H 1.09002 * 110.36419 * 155.85111 * 13 12 10 33 33 H 1.08994 * 110.36559 * 278.05860 * 13 12 10 34 34 H 1.07999 * 120.18803 * 0.02562 * 21 20 19 35 35 H 1.07992 * 119.46503 * 179.97438 * 22 21 20 36 36 H 1.08002 * 119.49703 * 179.97438 * 23 22 21 37 37 H 1.08004 * 120.21182 * 180.02562 * 24 23 22 38 38 H 1.08996 * 109.88310 * 120.48076 * 27 14 13 39 39 H 1.09002 * 109.88672 * 241.49116 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0019 -3.5584 -0.5359 12 6 1.1936 -4.7898 -0.6127 13 6 1.7911 -6.0433 0.0739 14 7 2.1103 -5.6063 1.4452 15 6 2.2133 -6.4103 2.5220 16 8 2.4828 -5.9388 3.6087 17 6 1.9971 -7.8721 2.3801 18 7 1.6962 -8.3728 1.1798 19 7 1.5024 -9.6337 0.9942 20 6 1.5918 -10.4784 2.0282 21 6 1.3839 -11.8579 1.8757 22 6 1.4853 -12.6777 2.9584 23 6 1.7936 -12.1693 4.2198 24 6 2.0031 -10.8372 4.4071 25 6 1.9071 -9.9598 3.3138 26 7 2.1022 -8.6456 3.4452 27 6 2.2989 -4.1482 1.4435 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3880 0.0005 30 1 1.3224 -4.8379 -1.6940 31 1 0.1428 -4.6646 -0.3512 32 1 1.0587 -6.8503 0.0937 33 1 2.6948 -6.3648 -0.4437 34 1 1.1449 -12.2670 0.9052 35 1 1.3244 -13.7388 2.8382 36 1 1.8672 -12.8425 5.0610 37 1 2.2415 -10.4574 5.3896 38 1 1.5821 -3.6810 2.1187 39 1 3.3146 -3.9053 1.7557 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969360494.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:10 Heat of formation + Delta-G solvation = 75.766921 kcal Electronic energy + Delta-G solvation = -24649.918120 eV Core-core repulsion = 20979.659264 eV Total energy + Delta-G solvation = -3670.258855 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.128 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.26180 -41.13057 -39.16009 -38.80670 -36.50828 -35.99523 -33.76660 -32.94713 -32.04604 -31.15106 -29.44172 -27.53306 -26.92646 -25.70738 -24.14258 -23.65554 -22.13543 -21.39254 -20.53276 -19.92040 -19.29124 -18.19476 -17.77411 -17.46821 -17.06781 -16.74067 -16.35423 -15.97905 -15.58201 -15.33175 -15.28288 -14.94785 -14.46115 -14.32708 -13.82802 -13.68754 -13.56280 -13.50178 -13.23001 -13.13238 -13.08311 -12.90009 -12.66437 -12.51436 -12.32140 -12.11884 -11.76167 -11.62503 -11.39690 -11.00712 -10.75155 -10.61448 -9.94677 -9.74684 -9.11279 -7.96742 -5.27325 -1.47859 -1.13169 0.50199 1.00450 1.28754 1.48515 1.49998 1.58191 1.85081 2.20464 2.53331 2.58765 2.64582 2.78270 3.19757 3.34385 3.53027 3.66072 3.72281 3.91274 3.96914 3.98688 4.18750 4.33889 4.35536 4.40787 4.51774 4.68653 4.74075 4.80526 4.94689 4.99591 5.02002 5.13192 5.17774 5.18631 5.35218 5.50708 5.52592 5.65194 6.20172 6.24279 6.64918 6.95188 7.31441 8.02265 8.26453 9.26198 Molecular weight = 313.13amu Principal moments of inertia in cm(-1) A = 0.038705 B = 0.002537 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.239183 B =11033.619147 C =11489.124560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.973 3.027 4 H -0.283 1.283 5 H -0.298 1.298 6 H -0.271 1.271 7 C -0.247 4.247 8 H 0.081 0.919 9 N -0.723 5.723 10 C 0.169 3.831 11 H 0.082 0.918 12 C -0.130 4.130 13 C 0.107 3.893 14 N -0.586 5.586 15 C 0.588 3.412 16 O -0.553 6.553 17 C 0.205 3.795 18 N -0.242 5.242 19 N -0.157 5.157 20 C 0.012 3.988 21 C -0.077 4.077 22 C -0.061 4.061 23 C -0.038 4.038 24 C -0.111 4.111 25 C 0.113 3.887 26 N -0.429 5.429 27 C 0.093 3.907 28 H 0.252 0.748 29 H 0.376 0.624 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.175 0.825 35 H 0.196 0.804 36 H 0.193 0.807 37 H 0.156 0.844 38 H 0.045 0.955 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.189 -34.037 3.773 34.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.802 3.198 4 H -0.210 1.210 5 H -0.225 1.225 6 H -0.196 1.196 7 C -0.378 4.378 8 H 0.099 0.901 9 N -0.362 5.362 10 C 0.058 3.942 11 H 0.100 0.900 12 C -0.169 4.169 13 C -0.015 4.015 14 N -0.318 5.318 15 C 0.371 3.629 16 O -0.429 6.429 17 C -0.067 4.067 18 N -0.102 5.102 19 N -0.018 5.018 20 C -0.123 4.123 21 C -0.098 4.098 22 C -0.082 4.082 23 C -0.060 4.060 24 C -0.131 4.131 25 C -0.027 4.027 26 N -0.152 5.152 27 C -0.033 4.033 28 H 0.060 0.940 29 H 0.209 0.791 30 H 0.127 0.873 31 H 0.085 0.915 32 H 0.125 0.875 33 H 0.110 0.890 34 H 0.192 0.808 35 H 0.213 0.787 36 H 0.210 0.790 37 H 0.174 0.826 38 H 0.063 0.937 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.447 -32.900 3.700 33.286 hybrid contribution -0.007 1.301 0.954 1.613 sum 3.440 -31.599 4.654 32.124 Atomic orbital electron populations 1.69815 1.06635 1.26183 1.59109 1.25583 0.96366 1.01185 1.03372 0.85148 0.77640 0.79457 0.77547 1.20981 1.22483 1.19588 1.19676 0.91659 0.84975 1.41497 0.90137 1.42536 1.05530 1.00547 1.87557 1.21420 0.96318 0.85587 0.90891 0.90048 1.23087 0.99372 0.92702 1.01717 1.22843 1.02095 0.97582 0.78957 1.48369 1.65993 1.08207 1.09210 1.17021 0.78934 0.83351 0.83564 1.90772 1.49880 1.75250 1.27043 1.23801 0.98688 0.96362 0.87853 1.74179 1.09587 1.06727 1.19703 1.74393 1.04672 0.96480 1.26283 1.21534 1.00109 0.98975 0.91634 1.21263 0.97980 0.87360 1.03217 1.21910 0.92603 1.03110 0.90548 1.21904 0.90436 0.93840 0.99837 1.21231 1.00956 0.93426 0.97458 1.20375 0.96275 0.90028 0.95987 1.68991 1.09659 1.05211 1.31306 1.23065 1.00404 0.77575 1.02216 0.93952 0.79111 0.87261 0.91484 0.87476 0.89027 0.80782 0.78672 0.79029 0.82628 0.93682 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.45 13.06 21.65 0.28 -59.16 16 2 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 3 Si 0.97 46.49 29.55 68.60 2.03 48.51 16 4 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.25 -13.59 9.96 84.03 0.84 -12.75 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.72 -36.24 5.15 -317.32 -1.63 -37.87 16 10 C 0.17 6.61 3.61 46.18 0.17 6.77 16 11 H 0.08 3.04 8.09 -2.39 -0.02 3.02 16 12 C -0.13 -4.05 6.71 31.99 0.21 -3.83 16 13 C 0.11 3.10 5.93 86.86 0.51 3.61 16 14 N -0.59 -21.30 3.33 -814.51 -2.71 -24.01 16 15 C 0.59 23.17 7.88 86.96 0.69 23.86 16 16 O -0.55 -25.68 17.19 -3.67 -0.06 -25.75 16 17 C 0.20 6.95 7.62 137.46 1.05 8.00 16 18 N -0.24 -7.15 7.75 -52.34 -0.41 -7.55 16 19 N -0.16 -3.92 11.68 -51.80 -0.60 -4.53 16 20 C 0.01 0.23 6.68 40.33 0.27 0.50 16 21 C -0.08 -0.66 10.00 22.30 0.22 -0.43 16 22 C -0.06 -0.08 9.95 22.08 0.22 0.14 16 23 C -0.04 -0.11 9.95 22.07 0.22 0.11 16 24 C -0.11 -1.43 10.01 22.33 0.22 -1.21 16 25 C 0.11 2.56 6.61 40.42 0.27 2.83 16 26 N -0.43 -13.74 10.22 -182.37 -1.86 -15.60 16 27 C 0.09 3.77 6.62 86.73 0.57 4.35 16 28 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 29 H 0.38 20.30 7.76 -92.71 -0.72 19.58 16 30 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.07 2.23 8.01 -2.38 -0.02 2.21 16 32 H 0.11 2.99 5.85 -2.39 -0.01 2.98 16 33 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 35 H 0.20 -1.50 8.06 -2.91 -0.02 -1.52 16 36 H 0.19 -1.08 8.06 -2.91 -0.02 -1.11 16 37 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 38 H 0.04 2.11 8.03 -2.39 -0.02 2.09 16 39 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -81.20 336.81 1.34 -79.85 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.38 Total: 17.87 kcal Atomic # 6 Polarization: 22.31 SS G_CDS: 5.93 Total: 28.24 kcal Atomic # 7 Polarization: -141.79 SS G_CDS: -6.93 Total: -148.73 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.06 Total: -25.75 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Total: -81.20 1.34 -79.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969360494.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.620 kcal (2) G-P(sol) polarization free energy of solvation -81.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds