Wall clock time and date at job start Fri Apr 10 2020 18:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48497 * 109.47359 * 355.35744 * 3 2 1 5 5 H 1.48503 * 109.47030 * 115.35999 * 3 2 1 6 6 H 1.48505 * 109.46945 * 235.35849 * 3 2 1 7 7 C 1.38816 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99662 * 352.25981 * 7 2 1 9 9 N 1.36935 * 119.99877 * 172.25761 * 7 2 1 10 10 C 1.47070 * 136.05569 * 6.39398 * 9 7 2 11 11 C 1.53757 * 87.88788 * 152.96246 * 10 9 7 12 12 N 1.46499 * 114.26765 * 139.78933 * 11 10 9 13 13 C 1.34775 * 120.00123 * 111.47706 * 12 11 10 14 14 O 1.21610 * 119.99610 * 0.02562 * 13 12 11 15 15 C 1.47410 * 120.00317 * 180.02562 * 13 12 11 16 16 C 1.41327 * 126.40959 * 359.68507 * 15 13 12 17 17 N 1.30474 * 108.07105 * 179.85469 * 16 15 13 18 18 N 1.39939 * 108.90913 * 0.41451 * 17 16 15 19 19 C 1.40176 * 125.76668 * 179.70152 * 18 17 16 20 20 C 1.39257 * 120.48713 * 0.03941 * 19 18 17 21 21 C 1.38508 * 118.36028 * 180.02562 * 20 19 18 22 22 C 1.38269 * 119.23701 * 359.97438 * 21 20 19 23 23 N 1.31868 * 120.90916 * 0.02562 * 22 21 20 24 24 C 1.31824 * 121.79169 * 359.66403 * 23 22 21 25 25 C 1.34530 * 108.45940 * 359.73036 * 18 17 16 26 26 C 1.47066 * 136.05905 * 186.76278 * 9 7 2 27 27 H 0.97004 * 120.00412 * 184.87714 * 1 2 3 28 28 H 1.09004 * 113.46535 * 267.69639 * 10 9 7 29 29 H 1.08996 * 113.46991 * 38.13336 * 10 9 7 30 30 H 1.08993 * 114.39362 * 272.67803 * 11 10 9 31 31 H 0.97001 * 120.00057 * 291.47548 * 12 11 10 32 32 H 1.08010 * 125.96650 * 359.97438 * 16 15 13 33 33 H 1.08003 * 120.82043 * 359.97438 * 20 19 18 34 34 H 1.08001 * 120.38430 * 180.02562 * 21 20 19 35 35 H 1.07995 * 119.55141 * 180.02562 * 22 21 20 36 36 H 1.07995 * 119.66498 * 180.31522 * 24 23 22 37 37 H 1.08001 * 126.30967 * 180.02562 * 25 18 17 38 38 H 1.09001 * 113.46790 * 321.86691 * 26 9 7 39 39 H 1.09000 * 113.46631 * 92.30253 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2892 2.7442 -0.1133 5 1 3.0170 1.7466 1.2652 6 1 3.1869 1.6484 -1.1519 7 6 2.0102 -1.2022 0.0005 8 1 1.4776 -2.1331 0.1269 9 7 3.3702 -1.2077 -0.1592 10 6 4.4312 -0.1923 -0.2389 11 6 5.4059 -1.2502 0.3041 12 7 6.7259 -1.2352 -0.3312 13 6 7.8078 -0.8461 0.3720 14 8 7.6883 -0.5081 1.5340 15 6 9.1360 -0.8305 -0.2674 16 6 9.4301 -1.1995 -1.5995 17 7 10.7121 -1.0470 -1.7881 18 7 11.2938 -0.5888 -0.6007 19 6 12.6546 -0.3131 -0.4082 20 6 13.5648 -0.4876 -1.4476 21 6 14.8989 -0.2024 -1.2086 22 6 15.2806 0.2430 0.0435 23 7 14.3935 0.3978 1.0068 24 6 13.1136 0.1436 0.8197 25 6 10.3263 -0.4582 0.3249 26 6 4.4119 -2.2311 -0.3331 27 1 -0.4851 -0.8370 0.0714 28 1 4.6554 0.1221 -1.2583 29 1 4.2793 0.6483 0.4381 30 1 5.4518 -1.3039 1.3917 31 1 6.8212 -1.5052 -1.2580 32 1 8.7177 -1.5455 -2.3339 33 1 13.2385 -0.8374 -2.4159 34 1 15.6326 -0.3258 -1.9915 35 1 16.3195 0.4672 0.2352 36 1 12.4160 0.2872 1.6315 37 1 10.4566 -0.1236 1.3435 38 1 4.2436 -3.1276 0.2637 39 1 4.6311 -2.4543 -1.3773 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030435450.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:30 Heat of formation + Delta-G solvation = 128.316246 kcal Electronic energy + Delta-G solvation = -24066.762981 eV Core-core repulsion = 20398.782835 eV Total energy + Delta-G solvation = -3667.980145 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.128 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.90270 -41.18508 -40.75288 -39.31167 -35.45456 -35.10259 -34.08486 -33.38761 -31.58589 -30.70376 -29.50977 -27.02002 -25.95129 -25.06345 -24.45506 -23.15101 -22.15819 -21.52428 -21.08392 -19.78779 -19.47522 -18.15106 -17.67422 -17.46443 -17.20524 -16.87184 -16.76512 -16.07777 -15.99166 -15.48556 -15.36954 -15.12637 -14.98265 -14.72870 -14.29266 -13.96409 -13.81308 -13.56979 -13.36528 -13.19799 -13.18303 -12.45673 -12.36075 -12.17258 -11.93781 -11.46082 -11.27283 -11.07297 -10.97490 -10.84126 -10.70048 -10.38820 -9.95165 -9.40316 -9.22116 -8.66238 -5.48797 -0.54849 0.06449 0.68027 0.99459 1.10266 1.39557 1.48177 1.66882 2.13840 2.35025 2.51817 2.68433 2.97688 3.16216 3.27791 3.32053 3.53727 3.59725 3.67504 3.83453 3.92116 3.94356 4.18599 4.22764 4.30191 4.35710 4.54181 4.56951 4.60863 4.65202 4.77702 4.88326 5.00390 5.07665 5.17503 5.24708 5.38189 5.59050 5.78919 5.93951 6.28123 6.61616 6.68588 6.77495 7.27080 7.30791 8.23555 8.89421 Molecular weight = 313.13amu Principal moments of inertia in cm(-1) A = 0.035050 B = 0.002341 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.669080 B =11959.514284 C =12180.037273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.084 4.084 3 Si 1.108 2.892 4 H -0.304 1.304 5 H -0.283 1.283 6 H -0.255 1.255 7 C -0.288 4.288 8 H 0.057 0.943 9 N -0.657 5.657 10 C 0.078 3.922 11 C 0.130 3.870 12 N -0.694 5.694 13 C 0.597 3.403 14 O -0.587 6.587 15 C -0.289 4.289 16 C 0.106 3.894 17 N -0.309 5.309 18 N -0.312 5.312 19 C 0.081 3.919 20 C -0.079 4.079 21 C -0.136 4.136 22 C 0.088 3.912 23 N -0.482 5.482 24 C 0.082 3.918 25 C 0.129 3.871 26 C 0.121 3.879 27 H 0.248 0.752 28 H 0.068 0.932 29 H 0.039 0.961 30 H 0.107 0.893 31 H 0.418 0.582 32 H 0.232 0.768 33 H 0.154 0.846 34 H 0.181 0.819 35 H 0.194 0.806 36 H 0.173 0.827 37 H 0.209 0.791 38 H 0.056 0.944 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.943 -2.066 -5.801 36.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.276 4.276 3 Si 0.935 3.065 4 H -0.232 1.232 5 H -0.211 1.211 6 H -0.180 1.180 7 C -0.416 4.416 8 H 0.074 0.926 9 N -0.386 5.386 10 C -0.048 4.048 11 C 0.023 3.977 12 N -0.345 5.345 13 C 0.386 3.614 14 O -0.468 6.468 15 C -0.304 4.304 16 C -0.083 4.083 17 N -0.126 5.126 18 N -0.084 5.084 19 C -0.013 4.013 20 C -0.106 4.106 21 C -0.156 4.156 22 C -0.069 4.069 23 N -0.191 5.191 24 C -0.078 4.078 25 C -0.019 4.019 26 C -0.005 4.005 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.125 0.875 31 H 0.256 0.744 32 H 0.248 0.752 33 H 0.171 0.829 34 H 0.198 0.802 35 H 0.211 0.789 36 H 0.190 0.810 37 H 0.225 0.775 38 H 0.074 0.926 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 36.743 -0.034 -5.050 37.088 hybrid contribution -1.782 -2.206 -0.362 2.859 sum 34.960 -2.240 -5.412 35.448 Atomic orbital electron populations 1.71023 1.06580 1.28720 1.55099 1.26980 0.96528 1.04459 0.99605 0.83243 0.73173 0.72179 0.77934 1.23222 1.21055 1.18035 1.19970 0.80623 0.94638 1.46350 0.92551 1.45726 1.01540 1.05359 1.86008 1.23475 0.87447 0.94314 0.99526 1.22786 0.79829 0.96637 0.98411 1.45442 1.05569 1.67317 1.16207 1.17450 0.83480 0.75549 0.84953 1.90783 1.86812 1.50676 1.18551 1.20170 0.93372 1.20072 0.96756 1.24798 0.93154 0.94845 0.95480 1.77226 1.09974 1.21748 1.03699 1.45607 1.05258 1.48549 1.08988 1.18933 0.80338 1.04179 0.97804 1.21642 0.92975 0.97140 0.98862 1.22516 0.95575 0.97872 0.99639 1.23527 1.00740 0.93952 0.88669 1.67843 1.01550 1.14978 1.34695 1.22827 0.93680 0.96747 0.94501 1.23359 0.86710 0.95068 0.96760 1.22850 0.85083 0.93019 0.99548 0.94306 0.91434 0.94295 0.87521 0.74409 0.75176 0.82873 0.80186 0.78909 0.81014 0.77475 0.92602 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.21 13.70 21.65 0.30 -62.92 16 2 C -0.08 -5.07 5.50 84.86 0.47 -4.60 16 3 Si 1.11 55.00 25.13 68.60 1.72 56.72 16 4 H -0.30 -15.42 7.11 99.48 0.71 -14.71 16 5 H -0.28 -13.51 6.65 99.48 0.66 -12.85 16 6 H -0.26 -11.20 6.13 99.48 0.61 -10.59 16 7 C -0.29 -16.80 11.08 84.03 0.93 -15.87 16 8 H 0.06 3.51 8.05 -2.91 -0.02 3.49 16 9 N -0.66 -31.25 3.70 -737.96 -2.73 -33.98 16 10 C 0.08 3.14 5.53 83.27 0.46 3.60 16 11 C 0.13 4.27 4.62 45.55 0.21 4.48 16 12 N -0.69 -16.59 5.38 -444.80 -2.39 -18.98 16 13 C 0.60 15.77 7.81 86.66 0.68 16.45 16 14 O -0.59 -20.50 16.49 -4.06 -0.07 -20.57 16 15 C -0.29 -5.85 6.13 -20.14 -0.12 -5.98 16 16 C 0.11 1.66 11.50 85.65 0.99 2.64 16 17 N -0.31 -5.67 11.85 -56.23 -0.67 -6.34 16 18 N -0.31 -5.59 3.77 -185.90 -0.70 -6.29 16 19 C 0.08 1.26 6.70 38.19 0.26 1.52 16 20 C -0.08 -0.94 9.77 22.58 0.22 -0.72 16 21 C -0.14 -0.93 10.10 22.34 0.23 -0.70 16 22 C 0.09 0.77 11.18 84.69 0.95 1.71 16 23 N -0.48 -7.06 10.35 -195.34 -2.02 -9.08 16 24 C 0.08 1.19 10.62 84.83 0.90 2.09 16 25 C 0.13 2.38 10.62 84.24 0.89 3.27 16 26 C 0.12 4.20 8.44 83.18 0.70 4.90 16 27 H 0.25 16.15 8.73 -92.71 -0.81 15.34 16 28 H 0.07 2.46 7.73 -2.38 -0.02 2.44 16 29 H 0.04 1.70 4.65 -2.39 -0.01 1.69 16 30 H 0.11 3.94 7.45 -2.39 -0.02 3.92 16 31 H 0.42 6.69 7.71 -92.71 -0.71 5.97 16 32 H 0.23 1.72 7.50 -2.91 -0.02 1.70 16 33 H 0.15 1.70 7.77 -2.91 -0.02 1.68 16 34 H 0.18 -0.04 8.06 -2.91 -0.02 -0.07 16 35 H 0.19 0.40 8.06 -2.91 -0.02 0.37 16 36 H 0.17 1.95 6.74 -2.91 -0.02 1.93 16 37 H 0.21 3.00 7.04 -2.91 -0.02 2.98 16 38 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.08 2.16 8.13 -2.39 -0.02 2.14 16 Total: -1.00 -82.73 335.63 1.41 -81.32 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 0.21 Total: 7.33 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 7.75 Total: 12.79 kcal Atomic # 7 Polarization: -129.37 SS G_CDS: -8.21 Total: -137.59 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.07 Total: -20.57 kcal Atomic # 14 Polarization: 55.00 SS G_CDS: 1.72 Total: 56.72 kcal Total: -82.73 1.41 -81.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030435450.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.633 kcal (2) G-P(sol) polarization free energy of solvation -82.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds