Wall clock time and date at job start Fri Apr 10 2020 18:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86794 * 119.99995 * 2 1 4 4 H 1.48494 * 109.47632 * 274.98995 * 3 2 1 5 5 H 1.48498 * 109.47134 * 34.99505 * 3 2 1 6 6 H 1.48504 * 109.47081 * 154.99207 * 3 2 1 7 7 C 1.38811 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00168 * 185.05599 * 7 2 1 9 9 N 1.36943 * 119.99898 * 5.06190 * 7 2 1 10 10 C 1.47576 * 134.49333 * 173.48263 * 9 7 2 11 11 C 1.53945 * 86.11686 * 155.35478 * 10 9 7 12 12 N 1.46498 * 113.73996 * 137.95524 * 11 10 9 13 13 C 1.34774 * 120.00244 * 156.92576 * 12 11 10 14 14 O 1.21576 * 120.00065 * 359.97438 * 13 12 11 15 15 C 1.47672 * 120.00360 * 179.97438 * 13 12 11 16 16 C 1.39700 * 120.08019 * 180.02562 * 15 13 12 17 17 C 1.37735 * 119.91493 * 180.02562 * 16 15 13 18 18 C 1.39028 * 120.08579 * 0.02562 * 17 16 15 19 19 N 1.39921 * 119.92035 * 179.97438 * 18 17 16 20 20 C 1.36358 * 127.11779 * 359.68845 * 19 18 17 21 21 N 1.30500 * 107.19684 * 180.25361 * 20 19 18 22 22 N 1.28540 * 109.91963 * 0.02562 * 21 20 19 23 23 C 1.30503 * 109.91985 * 359.97438 * 22 21 20 24 24 C 1.39022 * 120.15775 * 0.25115 * 18 17 16 25 25 C 1.37741 * 120.08160 * 359.44888 * 24 18 17 26 26 C 1.47815 * 134.45433 * 353.34661 * 9 7 2 27 27 H 0.97002 * 120.00387 * 359.97438 * 1 2 3 28 28 H 1.09006 * 113.76922 * 41.05404 * 10 9 7 29 29 H 1.09001 * 113.77183 * 269.65792 * 10 9 7 30 30 H 1.09002 * 113.74337 * 269.15130 * 11 10 9 31 31 H 0.96998 * 120.00275 * 336.92141 * 12 11 10 32 32 H 1.07999 * 120.04305 * 359.97438 * 16 15 13 33 33 H 1.08002 * 119.96011 * 179.97438 * 17 16 15 34 34 H 1.07995 * 126.39771 * 0.24055 * 20 19 18 35 35 H 1.07998 * 126.40177 * 180.02562 * 23 22 21 36 36 H 1.08001 * 119.95887 * 179.72249 * 24 18 17 37 37 H 1.07998 * 120.04238 * 180.27539 * 25 24 18 38 38 H 1.08998 * 113.76652 * 90.38396 * 26 9 7 39 39 H 1.08998 * 113.83745 * 318.91605 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3922 2.1073 -1.3947 5 1 1.5043 2.6198 0.8029 6 1 3.5965 1.4119 0.5919 7 6 2.0102 -1.2021 -0.0005 8 1 3.0870 -1.2040 0.0819 9 7 1.3295 -2.3857 -0.1057 10 6 1.7285 -3.7983 -0.2582 11 6 0.3709 -4.1419 0.3810 12 7 -0.3176 -5.2631 -0.2633 13 6 -1.2389 -5.9706 0.4199 14 8 -1.4985 -5.6787 1.5712 15 6 -1.9333 -7.1004 -0.2298 16 6 -2.8890 -7.8346 0.4768 17 6 -3.5342 -8.8880 -0.1323 18 6 -3.2351 -9.2215 -1.4485 19 7 -3.8922 -10.2926 -2.0637 20 6 -4.8383 -11.1044 -1.5112 21 7 -5.1817 -11.9728 -2.4228 22 7 -4.5173 -11.7602 -3.5025 23 6 -3.7146 -10.7445 -3.3379 24 6 -2.2804 -8.4967 -2.1528 25 6 -1.6355 -7.4381 -1.5523 26 6 -0.1003 -2.7608 -0.1094 27 1 -0.4851 0.8400 0.0004 28 1 2.5859 -4.0811 0.3526 29 1 1.8194 -4.1196 -1.2959 30 1 0.4075 -4.2332 1.4666 31 1 -0.1103 -5.4962 -1.1818 32 1 -3.1211 -7.5769 1.4996 33 1 -4.2729 -9.4563 0.4134 34 1 -5.2299 -11.0408 -0.5068 35 1 -3.0365 -10.3377 -4.0735 36 1 -2.0473 -8.7614 -3.1736 37 1 -0.8972 -6.8727 -2.1015 38 1 -0.5477 -2.7767 -1.1032 39 1 -0.7003 -2.2168 0.6200 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031102124.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:46 Heat of formation + Delta-G solvation = 142.568556 kcal Electronic energy + Delta-G solvation = -24014.961765 eV Core-core repulsion = 20347.599646 eV Total energy + Delta-G solvation = -3667.362119 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.128 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.69995 -40.48153 -39.04692 -37.57512 -35.31424 -33.81002 -32.15675 -31.81334 -30.87732 -30.40214 -27.55021 -25.31831 -24.94500 -24.20527 -23.36950 -22.36568 -21.58142 -20.56937 -19.85715 -19.23037 -17.71562 -16.88694 -16.64622 -16.30806 -16.23501 -15.58362 -15.12237 -15.10357 -14.71845 -14.67997 -14.27310 -14.04701 -13.89289 -13.52894 -13.24916 -12.78636 -12.01216 -12.00412 -11.75489 -11.68200 -11.55628 -11.50213 -10.96836 -10.95108 -10.87978 -10.57268 -10.14645 -9.98045 -9.84661 -9.69967 -9.62780 -9.09073 -8.88756 -8.59851 -7.00646 -5.87233 -3.20767 -0.03302 0.70974 1.45735 1.82833 2.39096 2.65959 3.19493 3.34341 3.39689 3.41688 3.48971 3.83952 3.96444 4.07706 4.23134 4.35932 4.43706 4.58569 4.70050 4.71654 4.97625 5.03171 5.11568 5.30755 5.36225 5.46626 5.48021 5.55476 5.73729 5.82083 5.90689 6.01638 6.09666 6.28225 6.43389 6.45391 6.58486 7.13483 7.21799 7.45221 7.65903 7.87039 8.16000 8.28504 8.93911 9.60323 10.46141 11.30047 Molecular weight = 313.13amu Principal moments of inertia in cm(-1) A = 0.037167 B = 0.002160 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.180228 B =12960.708100 C =13212.260754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.228 4.228 8 H 0.083 0.917 9 N -0.606 5.606 10 C 0.113 3.887 11 C 0.090 3.910 12 N -0.707 5.707 13 C 0.552 3.448 14 O -0.534 6.534 15 C -0.124 4.124 16 C -0.033 4.033 17 C -0.134 4.134 18 C 0.144 3.856 19 N -0.430 5.430 20 C 0.162 3.838 21 N -0.291 5.291 22 N -0.291 5.291 23 C 0.162 3.838 24 C -0.133 4.133 25 C -0.059 4.059 26 C 0.157 3.843 27 H 0.256 0.744 28 H 0.051 0.949 29 H 0.035 0.965 30 H 0.113 0.887 31 H 0.396 0.604 32 H 0.151 0.849 33 H 0.139 0.861 34 H 0.224 0.776 35 H 0.224 0.776 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.031 0.969 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.854 -20.057 -3.909 21.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.356 4.356 8 H 0.101 0.899 9 N -0.333 5.333 10 C -0.014 4.014 11 C -0.015 4.015 12 N -0.357 5.357 13 C 0.338 3.662 14 O -0.412 6.412 15 C -0.127 4.127 16 C -0.053 4.053 17 C -0.154 4.154 18 C 0.051 3.949 19 N -0.117 5.117 20 C -0.125 4.125 21 N -0.128 5.128 22 N -0.128 5.128 23 C -0.125 4.125 24 C -0.153 4.153 25 C -0.078 4.078 26 C 0.031 3.969 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.131 0.869 31 H 0.230 0.770 32 H 0.169 0.831 33 H 0.157 0.843 34 H 0.240 0.760 35 H 0.240 0.760 36 H 0.157 0.843 37 H 0.160 0.840 38 H 0.049 0.951 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.738 -20.696 -3.755 22.086 hybrid contribution 1.202 1.977 -0.084 2.315 sum -5.536 -18.719 -3.838 19.894 Atomic orbital electron populations 1.69837 1.05123 1.25653 1.55628 1.24863 0.95713 0.97738 1.01881 0.86085 0.78757 0.83296 0.77542 1.21529 1.21590 1.20428 1.18983 0.90754 0.81611 1.44212 0.89937 1.45704 1.02361 1.00565 1.84691 1.22871 0.94597 0.86842 0.97122 1.24037 0.93430 0.85128 0.98882 1.46102 1.40302 1.32975 1.16350 1.18100 0.79988 0.81951 0.86181 1.90804 1.64271 1.68986 1.17125 1.20312 0.99530 0.98148 0.94749 1.21212 0.91899 0.91506 1.00657 1.20830 1.02453 0.99609 0.92536 1.17909 0.95261 0.88524 0.93244 1.44314 1.30806 1.24284 1.12304 1.26844 0.92566 0.90607 1.02439 1.74262 1.20660 1.20904 0.96995 1.74262 1.06876 1.13642 1.18031 1.26844 1.03024 0.96116 0.86482 1.20765 0.97020 0.96786 1.00745 1.21264 0.97787 0.95100 0.93634 1.22660 0.88153 0.87826 0.98288 0.93440 0.93120 0.94719 0.86922 0.76955 0.83125 0.84302 0.75998 0.75985 0.84313 0.84013 0.95120 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.80 11.51 55.49 0.64 -26.16 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 3 Si 0.91 21.64 29.56 -169.99 -5.02 16.62 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.23 -6.23 10.70 -15.06 -0.16 -6.39 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.61 -14.95 3.70 -177.89 -0.66 -15.61 16 10 C 0.11 2.09 8.69 -2.97 -0.03 2.07 16 11 C 0.09 1.61 4.40 -70.15 -0.31 1.30 16 12 N -0.71 -9.58 5.32 -56.35 -0.30 -9.88 16 13 C 0.55 7.68 7.77 -12.41 -0.10 7.58 16 14 O -0.53 -9.56 15.96 5.30 0.08 -9.48 16 15 C -0.12 -1.22 5.88 -104.95 -0.62 -1.84 16 16 C -0.03 -0.29 9.58 -39.22 -0.38 -0.66 16 17 C -0.13 -0.88 9.46 -39.47 -0.37 -1.25 16 18 C 0.14 0.98 6.65 -83.58 -0.56 0.42 16 19 N -0.43 -3.15 2.99 -63.17 -0.19 -3.34 16 20 C 0.16 1.24 12.06 -89.16 -1.08 0.16 16 21 N -0.29 -3.24 12.19 29.85 0.36 -2.88 16 22 N -0.29 -3.24 12.19 29.85 0.36 -2.88 16 23 C 0.16 1.23 12.06 -89.16 -1.08 0.15 16 24 C -0.13 -0.80 9.46 -39.47 -0.37 -1.17 16 25 C -0.06 -0.42 9.53 -39.22 -0.37 -0.79 16 26 C 0.16 3.57 7.24 -2.84 -0.02 3.55 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.04 0.58 8.11 -51.93 -0.42 0.16 16 30 H 0.11 2.21 7.51 -51.93 -0.39 1.82 16 31 H 0.40 4.07 6.73 -40.82 -0.27 3.79 16 32 H 0.15 1.31 7.64 -52.49 -0.40 0.91 16 33 H 0.14 0.55 6.84 -52.49 -0.36 0.19 16 34 H 0.22 0.78 7.17 -52.49 -0.38 0.41 16 35 H 0.22 0.76 7.17 -52.49 -0.38 0.38 16 36 H 0.14 0.46 6.84 -52.49 -0.36 0.10 16 37 H 0.14 0.73 6.39 -52.49 -0.34 0.40 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.93 7.37 -51.93 -0.38 1.55 16 LS Contribution 337.94 15.07 5.09 5.09 Total: -1.00 -36.22 337.94 -9.22 -45.44 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -4.07 Total: 0.16 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -5.53 Total: 2.92 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.22 Total: -60.74 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.08 Total: -9.48 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.22 -9.22 -45.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031102124.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.008 kcal (2) G-P(sol) polarization free energy of solvation -36.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds