Wall clock time and date at job start Fri Apr 10 2020 18:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86794 * 119.99995 * 2 1 4 4 H 1.48494 * 109.47632 * 274.98995 * 3 2 1 5 5 H 1.48498 * 109.47134 * 34.99505 * 3 2 1 6 6 H 1.48504 * 109.47081 * 154.99207 * 3 2 1 7 7 C 1.38811 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00168 * 185.05599 * 7 2 1 9 9 N 1.36943 * 119.99898 * 5.06190 * 7 2 1 10 10 C 1.47576 * 134.49333 * 173.48263 * 9 7 2 11 11 C 1.53945 * 86.11686 * 155.35478 * 10 9 7 12 12 N 1.46498 * 113.73996 * 137.95524 * 11 10 9 13 13 C 1.34774 * 120.00244 * 156.92576 * 12 11 10 14 14 O 1.21576 * 120.00065 * 359.97438 * 13 12 11 15 15 C 1.47672 * 120.00360 * 179.97438 * 13 12 11 16 16 C 1.39700 * 120.08019 * 180.02562 * 15 13 12 17 17 C 1.37735 * 119.91493 * 180.02562 * 16 15 13 18 18 C 1.39028 * 120.08579 * 0.02562 * 17 16 15 19 19 N 1.39921 * 119.92035 * 179.97438 * 18 17 16 20 20 C 1.36358 * 127.11779 * 359.68845 * 19 18 17 21 21 N 1.30500 * 107.19684 * 180.25361 * 20 19 18 22 22 N 1.28540 * 109.91963 * 0.02562 * 21 20 19 23 23 C 1.30503 * 109.91985 * 359.97438 * 22 21 20 24 24 C 1.39022 * 120.15775 * 0.25115 * 18 17 16 25 25 C 1.37741 * 120.08160 * 359.44888 * 24 18 17 26 26 C 1.47815 * 134.45433 * 353.34661 * 9 7 2 27 27 H 0.97002 * 120.00387 * 359.97438 * 1 2 3 28 28 H 1.09006 * 113.76922 * 41.05404 * 10 9 7 29 29 H 1.09001 * 113.77183 * 269.65792 * 10 9 7 30 30 H 1.09002 * 113.74337 * 269.15130 * 11 10 9 31 31 H 0.96998 * 120.00275 * 336.92141 * 12 11 10 32 32 H 1.07999 * 120.04305 * 359.97438 * 16 15 13 33 33 H 1.08002 * 119.96011 * 179.97438 * 17 16 15 34 34 H 1.07995 * 126.39771 * 0.24055 * 20 19 18 35 35 H 1.07998 * 126.40177 * 180.02562 * 23 22 21 36 36 H 1.08001 * 119.95887 * 179.72249 * 24 18 17 37 37 H 1.07998 * 120.04238 * 180.27539 * 25 24 18 38 38 H 1.08998 * 113.76652 * 90.38396 * 26 9 7 39 39 H 1.08998 * 113.83745 * 318.91605 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3922 2.1073 -1.3947 5 1 1.5043 2.6198 0.8029 6 1 3.5965 1.4119 0.5919 7 6 2.0102 -1.2021 -0.0005 8 1 3.0870 -1.2040 0.0819 9 7 1.3295 -2.3857 -0.1057 10 6 1.7285 -3.7983 -0.2582 11 6 0.3709 -4.1419 0.3810 12 7 -0.3176 -5.2631 -0.2633 13 6 -1.2389 -5.9706 0.4199 14 8 -1.4985 -5.6787 1.5712 15 6 -1.9333 -7.1004 -0.2298 16 6 -2.8890 -7.8346 0.4768 17 6 -3.5342 -8.8880 -0.1323 18 6 -3.2351 -9.2215 -1.4485 19 7 -3.8922 -10.2926 -2.0637 20 6 -4.8383 -11.1044 -1.5112 21 7 -5.1817 -11.9728 -2.4228 22 7 -4.5173 -11.7602 -3.5025 23 6 -3.7146 -10.7445 -3.3379 24 6 -2.2804 -8.4967 -2.1528 25 6 -1.6355 -7.4381 -1.5523 26 6 -0.1003 -2.7608 -0.1094 27 1 -0.4851 0.8400 0.0004 28 1 2.5859 -4.0811 0.3526 29 1 1.8194 -4.1196 -1.2959 30 1 0.4075 -4.2332 1.4666 31 1 -0.1103 -5.4962 -1.1818 32 1 -3.1211 -7.5769 1.4996 33 1 -4.2729 -9.4563 0.4134 34 1 -5.2299 -11.0408 -0.5068 35 1 -3.0365 -10.3377 -4.0735 36 1 -2.0473 -8.7614 -3.1736 37 1 -0.8972 -6.8727 -2.1015 38 1 -0.5477 -2.7767 -1.1032 39 1 -0.7003 -2.2168 0.6200 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031102124.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:45 Heat of formation + Delta-G solvation = 119.616556 kcal Electronic energy + Delta-G solvation = -24015.957038 eV Core-core repulsion = 20347.599646 eV Total energy + Delta-G solvation = -3668.357392 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.128 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.29279 -41.41820 -40.08270 -38.98983 -35.99383 -35.22484 -33.84272 -32.52452 -31.49261 -31.17204 -29.33162 -26.63153 -26.20332 -24.97220 -24.59383 -23.24929 -22.20507 -21.55794 -21.36548 -19.80693 -18.80306 -18.68899 -17.51006 -17.24422 -16.96156 -16.80929 -16.29725 -15.98546 -15.90192 -15.70058 -15.26670 -15.08319 -14.63074 -14.54907 -14.15058 -14.07401 -13.61969 -13.32713 -13.22063 -12.83146 -12.68160 -12.63635 -12.36477 -12.24575 -12.21685 -11.95610 -11.57198 -11.52699 -11.06754 -10.89253 -10.61464 -10.21141 -10.06362 -9.62545 -8.97088 -7.94592 -5.28723 -0.65377 0.19745 0.85549 1.29324 1.46018 1.47617 1.56897 1.76995 1.82588 2.07911 2.49027 2.72973 3.23235 3.33839 3.37725 3.51382 3.61971 3.67126 3.81373 3.83652 3.98735 4.12454 4.20446 4.31834 4.45974 4.53795 4.54471 4.75940 4.83805 4.91106 4.95012 4.98486 5.13199 5.19072 5.21954 5.27497 5.46089 5.48267 5.67968 5.88250 5.94583 6.55624 6.87241 7.21201 7.55505 7.57143 8.50137 9.22935 Molecular weight = 313.13amu Principal moments of inertia in cm(-1) A = 0.037167 B = 0.002160 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.180228 B =12960.708100 C =13212.260754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.981 3.019 4 H -0.285 1.285 5 H -0.298 1.298 6 H -0.264 1.264 7 C -0.234 4.234 8 H 0.091 0.909 9 N -0.640 5.640 10 C 0.123 3.877 11 C 0.120 3.880 12 N -0.695 5.695 13 C 0.552 3.448 14 O -0.583 6.583 15 C -0.144 4.144 16 C -0.043 4.043 17 C -0.129 4.129 18 C 0.147 3.853 19 N -0.432 5.432 20 C 0.170 3.830 21 N -0.337 5.337 22 N -0.338 5.338 23 C 0.173 3.827 24 C -0.126 4.126 25 C -0.051 4.051 26 C 0.154 3.846 27 H 0.249 0.751 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.415 0.585 32 H 0.141 0.859 33 H 0.165 0.835 34 H 0.257 0.743 35 H 0.262 0.738 36 H 0.173 0.827 37 H 0.164 0.836 38 H 0.029 0.971 39 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.734 -21.616 -5.445 22.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.808 3.192 4 H -0.212 1.212 5 H -0.225 1.225 6 H -0.188 1.188 7 C -0.362 4.362 8 H 0.109 0.891 9 N -0.368 5.368 10 C -0.003 4.003 11 C 0.014 3.986 12 N -0.347 5.347 13 C 0.341 3.659 14 O -0.464 6.464 15 C -0.148 4.148 16 C -0.062 4.062 17 C -0.148 4.148 18 C 0.054 3.946 19 N -0.119 5.119 20 C -0.117 4.117 21 N -0.173 5.173 22 N -0.174 5.174 23 C -0.114 4.114 24 C -0.145 4.145 25 C -0.070 4.070 26 C 0.028 3.972 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.254 0.746 32 H 0.159 0.841 33 H 0.182 0.818 34 H 0.273 0.727 35 H 0.278 0.722 36 H 0.190 0.810 37 H 0.181 0.819 38 H 0.047 0.953 39 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.597 -22.331 -5.338 23.633 hybrid contribution 0.818 2.333 0.388 2.503 sum -4.779 -19.998 -4.950 21.149 Atomic orbital electron populations 1.70037 1.06671 1.25766 1.57774 1.25727 0.96550 1.01216 1.02719 0.85028 0.77920 0.78889 0.77322 1.21232 1.22454 1.18831 1.19419 0.91399 0.82937 1.42463 0.89143 1.46042 1.03386 1.02196 1.85142 1.23029 0.94986 0.83172 0.99069 1.23221 0.93118 0.84369 0.97933 1.45779 1.40087 1.31623 1.17206 1.18727 0.79227 0.82384 0.85601 1.90781 1.65647 1.70514 1.19434 1.20018 1.00849 0.97683 0.96234 1.21198 0.92247 0.92281 1.00496 1.21002 1.02318 0.98811 0.92696 1.18061 0.95114 0.88180 0.93295 1.44387 1.30815 1.24334 1.12334 1.27513 0.91710 0.89401 1.03119 1.74178 1.22251 1.22892 0.97956 1.74175 1.08597 1.15772 1.18831 1.27577 1.02102 0.94779 0.86954 1.21105 0.95778 0.95565 1.02048 1.21445 0.97917 0.95339 0.92274 1.22554 0.87269 0.90356 0.97054 0.94244 0.91638 0.91266 0.88837 0.74611 0.84134 0.81773 0.72688 0.72229 0.80969 0.81870 0.95305 0.95402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.75 11.51 21.65 0.25 -57.50 16 2 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 3 Si 0.98 45.03 29.56 68.60 2.03 47.06 16 4 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 6 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.23 -12.78 10.70 84.03 0.90 -11.89 16 8 H 0.09 4.65 7.83 -2.91 -0.02 4.63 16 9 N -0.64 -31.60 3.70 -716.73 -2.65 -34.26 16 10 C 0.12 4.33 8.69 86.49 0.75 5.08 16 11 C 0.12 4.28 4.40 46.75 0.21 4.49 16 12 N -0.70 -17.92 5.32 -450.45 -2.40 -20.31 16 13 C 0.55 15.11 7.77 86.74 0.67 15.78 16 14 O -0.58 -21.52 15.96 -3.96 -0.06 -21.58 16 15 C -0.14 -2.61 5.88 -20.08 -0.12 -2.72 16 16 C -0.04 -0.68 9.58 22.50 0.22 -0.46 16 17 C -0.13 -1.32 9.46 22.34 0.21 -1.11 16 18 C 0.15 1.45 6.65 38.23 0.25 1.71 16 19 N -0.43 -4.89 2.99 -353.77 -1.06 -5.94 16 20 C 0.17 2.18 12.06 179.84 2.17 4.35 16 21 N -0.34 -7.11 12.19 -59.47 -0.73 -7.83 16 22 N -0.34 -7.04 12.19 -59.46 -0.73 -7.76 16 23 C 0.17 2.09 12.06 179.84 2.17 4.26 16 24 C -0.13 -0.94 9.46 22.34 0.21 -0.73 16 25 C -0.05 -0.54 9.53 22.51 0.21 -0.33 16 26 C 0.15 7.22 7.24 86.44 0.63 7.84 16 27 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 28 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 29 H 0.07 2.04 8.11 -2.39 -0.02 2.02 16 30 H 0.09 3.76 7.51 -2.39 -0.02 3.74 16 31 H 0.42 7.32 6.73 -92.71 -0.62 6.70 16 32 H 0.14 2.47 7.64 -2.91 -0.02 2.45 16 33 H 0.16 0.74 6.84 -2.91 -0.02 0.72 16 34 H 0.26 0.99 7.17 -2.91 -0.02 0.97 16 35 H 0.26 0.58 7.17 -2.91 -0.02 0.56 16 36 H 0.17 0.13 6.84 -2.91 -0.02 0.11 16 37 H 0.16 0.96 6.39 -2.91 -0.02 0.94 16 38 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 39 H 0.03 1.53 7.37 -2.39 -0.02 1.52 16 Total: -1.00 -83.66 337.94 4.09 -79.57 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 0.49 Total: 5.73 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: 8.95 Total: 22.84 kcal Atomic # 7 Polarization: -126.30 SS G_CDS: -7.31 Total: -133.61 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.06 Total: -21.58 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -83.66 4.09 -79.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031102124.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.185 kcal (2) G-P(sol) polarization free energy of solvation -83.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds