Wall clock time and date at job start Fri Apr 10 2020 18:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.55421 * 2 1 4 4 N 1.46502 * 109.47082 * 60.12625 * 3 2 1 5 5 C 1.34774 * 120.00289 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99709 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.00255 * 180.02562 * 5 4 3 8 8 S 1.81405 * 109.47091 * 180.02562 * 7 5 4 9 9 C 1.81402 * 103.00040 * 180.02562 * 8 7 5 10 10 C 1.47195 * 109.47186 * 179.97438 * 9 8 7 11 11 N 8.77125 * 119.77632 * 215.59076 * 3 1 2 12 12 C 1.53294 * 109.51505 * 239.87181 * 2 1 3 13 13 N 1.47231 * 108.40580 * 292.38573 * 12 2 1 14 14 C 1.36930 * 121.03478 * 129.45775 * 13 12 2 15 15 H 1.08002 * 120.00530 * 206.18179 * 14 13 12 16 16 C 1.38816 * 119.99608 * 26.18409 * 14 13 12 17 17 N 1.31615 * 120.00526 * 16.88476 * 16 14 13 18 18 Si 1.86806 * 119.99896 * 196.88547 * 16 14 13 19 19 H 1.48497 * 109.46975 * 59.99586 * 18 16 14 20 20 H 1.48495 * 109.47304 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47064 * 300.00118 * 18 16 14 22 22 C 1.47154 * 117.98080 * 309.48144 * 13 12 2 23 23 C 1.53298 * 108.41825 * 50.52276 * 22 13 12 24 24 O 1.42959 * 109.51115 * 120.12529 * 2 1 3 25 25 H 1.09004 * 109.46996 * 299.87189 * 1 2 3 26 26 H 1.08996 * 109.47344 * 59.87067 * 1 2 3 27 27 H 1.09000 * 109.46808 * 179.87595 * 1 2 3 28 28 H 1.09002 * 109.47344 * 180.12437 * 3 2 1 29 29 H 1.08999 * 109.46999 * 300.12635 * 3 2 1 30 30 H 0.97000 * 120.00089 * 0.02562 * 4 3 2 31 31 H 1.08999 * 109.47080 * 299.99449 * 7 5 4 32 32 H 1.08999 * 109.47266 * 59.99972 * 7 5 4 33 33 H 1.09004 * 109.47060 * 300.00082 * 9 8 7 34 34 H 1.08997 * 109.47156 * 59.99603 * 9 8 7 35 35 H 1.09001 * 109.68145 * 52.09850 * 12 2 1 36 36 H 1.09001 * 109.68444 * 172.65236 * 12 2 1 37 37 H 0.97002 * 120.00383 * 180.02562 * 17 16 14 38 38 H 1.08997 * 109.68310 * 290.77594 * 22 13 12 39 39 H 1.09005 * 109.67869 * 170.26376 * 22 13 12 40 40 H 1.09001 * 109.51044 * 67.59999 * 23 22 13 41 41 H 1.09000 * 109.51036 * 187.70217 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.5572 2.1322 1.1977 5 6 1.8847 3.4220 1.4111 6 8 2.5811 4.0110 0.6117 7 6 1.3864 4.1320 2.6433 8 16 1.9922 5.8420 2.6425 9 6 1.3006 6.5207 4.1760 10 6 1.7118 7.9267 4.3196 11 7 2.0298 9.0116 4.4308 12 6 2.0421 -0.7252 -1.2497 13 7 1.6959 -2.1516 -1.1340 14 6 1.0613 -2.8090 -2.1539 15 1 0.4490 -3.6729 -1.9412 16 6 1.2049 -2.3650 -3.4612 17 7 2.1856 -1.5448 -3.7738 18 14 0.0060 -2.9315 -4.7770 19 1 -1.3700 -2.5146 -4.4056 20 1 0.3739 -2.3190 -6.0788 21 1 0.0607 -4.4111 -4.8926 22 6 2.0522 -2.8497 0.1114 23 6 1.5396 -2.0210 1.2949 24 8 2.0075 -0.6763 1.1655 25 1 -0.3633 0.5119 0.8912 26 1 -0.3634 0.5158 -0.8888 27 1 -0.3633 -1.0277 -0.0022 28 1 3.1321 1.4402 -0.0022 29 1 1.6776 1.9568 -0.8888 30 1 1.0005 1.6610 1.8372 31 1 0.2964 4.1332 2.6462 32 1 1.7516 3.6172 3.5320 33 1 0.2127 6.4616 4.1413 34 1 1.6686 5.9462 5.0261 35 1 1.5705 -0.3042 -2.1376 36 1 3.1241 -0.6147 -1.3208 37 1 2.2857 -1.2342 -4.6873 38 1 3.1352 -2.9532 0.1774 39 1 1.5878 -3.8358 0.1252 40 1 0.4496 -2.0284 1.2995 41 1 1.9106 -2.4484 2.2264 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107752515.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:45 Heat of formation + Delta-G solvation = -20.050638 kcal Electronic energy + Delta-G solvation = -23689.204433 eV Core-core repulsion = 20117.941817 eV Total energy + Delta-G solvation = -3571.262616 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.87920 -38.82115 -37.04921 -35.04544 -34.39514 -32.13436 -31.31571 -30.84644 -29.99472 -28.01287 -26.42642 -25.37077 -23.29293 -21.46883 -20.66100 -18.99239 -18.55803 -17.26983 -17.02734 -16.60572 -16.11040 -15.87975 -15.54221 -15.31921 -15.01616 -14.46893 -14.40149 -14.15122 -13.84979 -13.55961 -13.44834 -13.24923 -13.08902 -12.78077 -12.53790 -12.41169 -12.33326 -11.91739 -11.65919 -11.25544 -11.06757 -10.86394 -10.73104 -10.43997 -10.37662 -10.32152 -10.13658 -9.95559 -9.61136 -9.13486 -8.97696 -8.58554 -8.09932 -6.79738 -5.89227 -3.32739 0.61151 1.87162 2.28966 2.52953 2.66921 3.15937 3.31431 3.33970 3.37957 3.38644 4.15489 4.39233 4.45954 4.57363 4.63403 4.65829 4.85884 5.07107 5.28711 5.39380 5.44496 5.60077 5.84571 5.87050 5.93406 6.01318 6.06628 6.23269 6.35796 6.47016 6.59008 6.68658 6.76242 7.00971 7.02914 7.40379 7.46402 7.65700 7.79955 8.14806 8.27955 9.05739 9.68852 10.25853 11.18798 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.026464 B = 0.002575 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.773143 B =10870.489807 C =11441.835134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.078 3.922 3 C 0.141 3.859 4 N -0.710 5.710 5 C 0.525 3.475 6 O -0.523 6.523 7 C -0.132 4.132 8 S -0.133 6.133 9 C -0.027 4.027 10 C 0.222 3.778 11 N -0.408 5.408 12 C 0.159 3.841 13 N -0.590 5.590 14 C -0.256 4.256 15 H 0.068 0.932 16 C 0.004 3.996 17 N -0.901 5.901 18 Si 0.904 3.096 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.282 1.282 22 C 0.109 3.891 23 C 0.046 3.954 24 O -0.385 6.385 25 H 0.041 0.959 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.403 0.597 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.097 0.903 36 H 0.030 0.970 37 H 0.257 0.743 38 H 0.026 0.974 39 H 0.061 0.939 40 H 0.048 0.952 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.654 7.548 16.527 19.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 C 0.017 3.983 4 N -0.362 5.362 5 C 0.308 3.692 6 O -0.400 6.400 7 C -0.284 4.284 8 S 0.092 5.908 9 C -0.178 4.178 10 C -0.096 4.096 11 N -0.086 5.086 12 C 0.032 3.968 13 N -0.314 5.314 14 C -0.385 4.385 15 H 0.086 0.914 16 C -0.195 4.195 17 N -0.545 5.545 18 Si 0.733 3.267 19 H -0.210 1.210 20 H -0.215 1.215 21 H -0.208 1.208 22 C -0.018 4.018 23 C -0.032 4.032 24 O -0.304 6.304 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.239 0.761 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.115 0.885 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.044 0.956 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.879 10.213 15.301 18.801 hybrid contribution -1.923 -1.898 0.282 2.717 sum -5.802 8.315 15.583 18.591 Atomic orbital electron populations 1.22209 0.95698 1.03321 1.00702 1.22557 0.93574 0.90540 0.89635 1.21417 1.00098 0.89900 0.86888 1.45858 1.53380 1.10985 1.26020 1.19489 0.81060 0.82318 0.86296 1.90785 1.37252 1.65678 1.46238 1.23598 1.05819 0.96786 1.02167 1.88146 1.68678 1.08886 1.25137 1.20827 1.05686 0.87933 1.03311 1.27754 0.93999 0.93753 0.94140 1.81282 1.07883 1.11891 1.07593 1.21313 0.97877 0.83969 0.93620 1.43997 1.68633 1.04906 1.13830 1.19104 1.21831 1.12230 0.85377 0.91446 1.25042 0.97263 1.00063 0.97107 1.69995 1.29160 1.36637 1.18702 0.86358 0.80949 0.78362 0.81030 1.20978 1.21517 1.20843 1.21599 0.97585 0.95240 0.87360 1.23036 0.98283 0.83074 0.98764 1.87802 1.72976 1.25873 1.43755 0.93976 0.91836 0.90764 0.90608 0.89832 0.76147 0.86591 0.86501 0.85443 0.85431 0.88500 0.95192 0.93305 0.95641 0.92048 0.93377 0.90161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 7.92 37.16 0.29 -2.21 16 2 C 0.08 1.33 0.76 -90.47 -0.07 1.26 16 3 C 0.14 2.18 4.82 -4.04 -0.02 2.17 16 4 N -0.71 -8.50 5.15 -60.29 -0.31 -8.81 16 5 C 0.53 6.39 7.85 -10.99 -0.09 6.30 16 6 O -0.52 -8.80 15.86 5.56 0.09 -8.72 16 7 C -0.13 -0.92 6.42 36.00 0.23 -0.69 16 8 S -0.13 -1.18 20.83 -107.50 -2.24 -3.42 16 9 C -0.03 -0.12 6.42 34.37 0.22 0.10 16 10 C 0.22 1.83 15.44 -20.76 -0.32 1.51 16 11 N -0.41 -4.69 18.54 42.15 0.78 -3.91 16 12 C 0.16 3.52 4.12 -3.49 -0.01 3.51 16 13 N -0.59 -13.77 2.57 -171.76 -0.44 -14.21 16 14 C -0.26 -6.59 9.65 -15.06 -0.15 -6.74 16 15 H 0.07 1.70 7.88 -52.49 -0.41 1.28 16 16 C 0.00 0.12 4.95 -17.43 -0.09 0.03 16 17 N -0.90 -25.06 11.14 55.49 0.62 -24.44 16 18 Si 0.90 20.76 29.59 -169.99 -5.03 15.73 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.11 2.12 6.73 -3.53 -0.02 2.09 16 23 C 0.05 0.74 6.60 37.31 0.25 0.98 16 24 O -0.38 -6.44 9.97 -35.23 -0.35 -6.79 16 25 H 0.04 0.51 6.88 -51.93 -0.36 0.16 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.07 1.29 6.11 -51.93 -0.32 0.97 16 28 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.40 3.91 7.21 -40.82 -0.29 3.62 16 31 H 0.12 0.48 8.14 -51.92 -0.42 0.05 16 32 H 0.12 0.51 8.14 -51.92 -0.42 0.08 16 33 H 0.13 0.19 8.14 -51.92 -0.42 -0.23 16 34 H 0.13 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.10 2.39 6.14 -51.93 -0.32 2.07 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 1.14 7.96 -51.93 -0.41 0.72 16 40 H 0.05 0.74 6.25 -51.93 -0.32 0.41 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 354.81 15.07 5.35 5.35 Total: -1.00 -33.24 354.81 -7.11 -40.35 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -5.80 Total: 0.55 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: 0.23 Total: 8.31 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 0.65 Total: -51.37 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.26 Total: -15.51 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Atomic # 16 Polarization: -1.18 SS G_CDS: -2.24 Total: -3.42 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.24 -7.11 -40.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107752515.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.298 kcal (2) G-P(sol) polarization free energy of solvation -33.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds