Wall clock time and date at job start Fri Apr 10 2020 18:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.55421 * 2 1 4 4 N 1.46502 * 109.47082 * 60.12625 * 3 2 1 5 5 C 1.34774 * 120.00289 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99709 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.00255 * 180.02562 * 5 4 3 8 8 S 1.81405 * 109.47091 * 180.02562 * 7 5 4 9 9 C 1.81402 * 103.00040 * 180.02562 * 8 7 5 10 10 C 1.47195 * 109.47186 * 179.97438 * 9 8 7 11 11 N 8.77125 * 119.77632 * 215.59076 * 3 1 2 12 12 C 1.53294 * 109.51505 * 239.87181 * 2 1 3 13 13 N 1.47231 * 108.40580 * 292.38573 * 12 2 1 14 14 C 1.36930 * 121.03478 * 129.45775 * 13 12 2 15 15 H 1.08002 * 120.00530 * 206.18179 * 14 13 12 16 16 C 1.38816 * 119.99608 * 26.18409 * 14 13 12 17 17 N 1.31615 * 120.00526 * 16.88476 * 16 14 13 18 18 Si 1.86806 * 119.99896 * 196.88547 * 16 14 13 19 19 H 1.48497 * 109.46975 * 59.99586 * 18 16 14 20 20 H 1.48495 * 109.47304 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47064 * 300.00118 * 18 16 14 22 22 C 1.47154 * 117.98080 * 309.48144 * 13 12 2 23 23 C 1.53298 * 108.41825 * 50.52276 * 22 13 12 24 24 O 1.42959 * 109.51115 * 120.12529 * 2 1 3 25 25 H 1.09004 * 109.46996 * 299.87189 * 1 2 3 26 26 H 1.08996 * 109.47344 * 59.87067 * 1 2 3 27 27 H 1.09000 * 109.46808 * 179.87595 * 1 2 3 28 28 H 1.09002 * 109.47344 * 180.12437 * 3 2 1 29 29 H 1.08999 * 109.46999 * 300.12635 * 3 2 1 30 30 H 0.97000 * 120.00089 * 0.02562 * 4 3 2 31 31 H 1.08999 * 109.47080 * 299.99449 * 7 5 4 32 32 H 1.08999 * 109.47266 * 59.99972 * 7 5 4 33 33 H 1.09004 * 109.47060 * 300.00082 * 9 8 7 34 34 H 1.08997 * 109.47156 * 59.99603 * 9 8 7 35 35 H 1.09001 * 109.68145 * 52.09850 * 12 2 1 36 36 H 1.09001 * 109.68444 * 172.65236 * 12 2 1 37 37 H 0.97002 * 120.00383 * 180.02562 * 17 16 14 38 38 H 1.08997 * 109.68310 * 290.77594 * 22 13 12 39 39 H 1.09005 * 109.67869 * 170.26376 * 22 13 12 40 40 H 1.09001 * 109.51044 * 67.59999 * 23 22 13 41 41 H 1.09000 * 109.51036 * 187.70217 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.5572 2.1322 1.1977 5 6 1.8847 3.4220 1.4111 6 8 2.5811 4.0110 0.6117 7 6 1.3864 4.1320 2.6433 8 16 1.9922 5.8420 2.6425 9 6 1.3006 6.5207 4.1760 10 6 1.7118 7.9267 4.3196 11 7 2.0298 9.0116 4.4308 12 6 2.0421 -0.7252 -1.2497 13 7 1.6959 -2.1516 -1.1340 14 6 1.0613 -2.8090 -2.1539 15 1 0.4490 -3.6729 -1.9412 16 6 1.2049 -2.3650 -3.4612 17 7 2.1856 -1.5448 -3.7738 18 14 0.0060 -2.9315 -4.7770 19 1 -1.3700 -2.5146 -4.4056 20 1 0.3739 -2.3190 -6.0788 21 1 0.0607 -4.4111 -4.8926 22 6 2.0522 -2.8497 0.1114 23 6 1.5396 -2.0210 1.2949 24 8 2.0075 -0.6763 1.1655 25 1 -0.3633 0.5119 0.8912 26 1 -0.3634 0.5158 -0.8888 27 1 -0.3633 -1.0277 -0.0022 28 1 3.1321 1.4402 -0.0022 29 1 1.6776 1.9568 -0.8888 30 1 1.0005 1.6610 1.8372 31 1 0.2964 4.1332 2.6462 32 1 1.7516 3.6172 3.5320 33 1 0.2127 6.4616 4.1413 34 1 1.6686 5.9462 5.0261 35 1 1.5705 -0.3042 -2.1376 36 1 3.1241 -0.6147 -1.3208 37 1 2.2857 -1.2342 -4.6873 38 1 3.1352 -2.9532 0.1774 39 1 1.5878 -3.8358 0.1252 40 1 0.4496 -2.0284 1.2995 41 1 1.9106 -2.4484 2.2264 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107752515.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:44 Heat of formation + Delta-G solvation = -44.123798 kcal Electronic energy + Delta-G solvation = -23690.248324 eV Core-core repulsion = 20117.941817 eV Total energy + Delta-G solvation = -3572.306507 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.07886 -40.10276 -37.73522 -36.51644 -35.88392 -33.36665 -33.17116 -31.36746 -30.71421 -29.52104 -27.97245 -26.82814 -24.95398 -22.97493 -21.70944 -20.32615 -19.42897 -18.89345 -18.02354 -17.49268 -17.18824 -16.91172 -16.72739 -16.40028 -16.04185 -15.80792 -15.56477 -15.32914 -15.18391 -15.00084 -14.65753 -14.40444 -14.23438 -13.85459 -13.65096 -13.30426 -13.15510 -13.03464 -12.89494 -12.88350 -12.73077 -12.49070 -12.41472 -12.16944 -11.91690 -11.81435 -11.18582 -10.99425 -10.91501 -10.71852 -10.46703 -10.10343 -8.70977 -8.69659 -7.88037 -5.34530 0.06705 1.36356 1.47658 1.49408 1.56331 1.62636 1.71023 2.08542 2.25465 2.50098 2.82707 2.86846 3.26605 3.53269 3.76518 3.98340 4.06759 4.15603 4.24536 4.29001 4.42638 4.46834 4.48136 4.50950 4.62106 4.69152 4.76171 4.84249 5.01915 5.08609 5.17010 5.24985 5.39751 5.41735 5.57032 5.63503 6.31196 6.40576 6.45487 6.55281 7.08846 7.25537 7.78659 8.32222 9.17240 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.026464 B = 0.002575 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.773143 B =10870.489807 C =11441.835134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.095 3.905 3 C 0.151 3.849 4 N -0.698 5.698 5 C 0.519 3.481 6 O -0.578 6.578 7 C -0.105 4.105 8 S -0.226 6.226 9 C -0.002 4.002 10 C 0.246 3.754 11 N -0.477 5.477 12 C 0.165 3.835 13 N -0.607 5.607 14 C -0.258 4.258 15 H 0.074 0.926 16 C -0.051 4.051 17 N -0.937 5.937 18 Si 0.966 3.034 19 H -0.274 1.274 20 H -0.299 1.299 21 H -0.276 1.276 22 C 0.100 3.900 23 C 0.054 3.946 24 O -0.382 6.382 25 H 0.085 0.915 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.419 0.581 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.066 0.934 36 H -0.010 1.010 37 H 0.250 0.750 38 H 0.010 0.990 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.331 6.729 19.837 22.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.054 3.946 3 C 0.026 3.974 4 N -0.351 5.351 5 C 0.305 3.695 6 O -0.457 6.457 7 C -0.255 4.255 8 S -0.002 6.002 9 C -0.152 4.152 10 C -0.072 4.072 11 N -0.156 5.156 12 C 0.038 3.962 13 N -0.331 5.331 14 C -0.388 4.388 15 H 0.092 0.908 16 C -0.246 4.246 17 N -0.583 5.583 18 Si 0.794 3.206 19 H -0.200 1.200 20 H -0.225 1.225 21 H -0.202 1.202 22 C -0.026 4.026 23 C -0.023 4.023 24 O -0.302 6.302 25 H 0.103 0.897 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.258 0.742 31 H 0.175 0.825 32 H 0.173 0.827 33 H 0.186 0.814 34 H 0.185 0.815 35 H 0.084 0.916 36 H 0.008 0.992 37 H 0.059 0.941 38 H 0.028 0.972 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.588 9.364 18.678 21.907 hybrid contribution -1.028 -1.728 -0.710 2.132 sum -7.616 7.636 17.968 20.956 Atomic orbital electron populations 1.22117 0.93696 1.02868 1.02363 1.22154 0.94773 0.90457 0.87190 1.20988 0.98646 0.89433 0.88355 1.45626 1.53374 1.11159 1.24952 1.20415 0.79859 0.81856 0.87339 1.90778 1.39616 1.66778 1.48567 1.23495 1.07860 0.94069 1.00108 1.88577 1.70481 1.11908 1.29264 1.21070 1.07648 0.85133 1.01330 1.28508 0.92150 0.94359 0.92178 1.81302 1.10218 1.14266 1.09825 1.21100 0.95299 0.84423 0.95402 1.44259 1.68611 1.05571 1.14646 1.19467 1.21233 1.11998 0.86089 0.90845 1.25787 0.98812 1.00822 0.99197 1.70174 1.31118 1.38494 1.18494 0.85368 0.79224 0.77952 0.78079 1.19964 1.22548 1.20191 1.21844 0.96951 0.96442 0.87328 1.23094 0.99186 0.81752 0.98284 1.87816 1.73294 1.26359 1.42691 0.89652 0.92831 0.92176 0.93009 0.91153 0.74243 0.82501 0.82721 0.81432 0.81492 0.91614 0.99214 0.94125 0.97192 0.91105 0.91889 0.86330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.40 7.92 71.98 0.57 -3.83 16 2 C 0.10 3.19 0.76 -10.69 -0.01 3.19 16 3 C 0.15 4.72 4.82 86.38 0.42 5.14 16 4 N -0.70 -14.99 5.15 -463.06 -2.39 -17.38 16 5 C 0.52 11.54 7.85 87.66 0.69 12.23 16 6 O -0.58 -19.60 15.86 -3.04 -0.05 -19.65 16 7 C -0.10 -0.98 6.42 71.23 0.46 -0.53 16 8 S -0.23 -3.50 20.83 -56.49 -1.18 -4.68 16 9 C 0.00 -0.01 6.42 70.18 0.45 0.44 16 10 C 0.25 3.57 15.44 89.44 1.38 4.95 16 11 N -0.48 -10.81 18.54 20.00 0.37 -10.44 16 12 C 0.16 7.61 4.12 86.34 0.36 7.96 16 13 N -0.61 -28.68 2.57 -697.32 -1.79 -30.47 16 14 C -0.26 -13.40 9.65 84.04 0.81 -12.58 16 15 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 16 C -0.05 -2.74 4.95 84.86 0.42 -2.32 16 17 N -0.94 -54.50 11.14 21.65 0.24 -54.26 16 18 Si 0.97 43.34 29.59 68.60 2.03 45.37 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 21 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 22 C 0.10 3.80 6.73 86.35 0.58 4.38 16 23 C 0.05 1.54 6.60 72.08 0.48 2.02 16 24 O -0.38 -11.90 9.97 -148.98 -1.49 -13.38 16 25 H 0.08 1.71 6.88 -2.38 -0.02 1.69 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.06 1.93 6.11 -2.39 -0.01 1.91 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.42 6.21 7.21 -92.71 -0.67 5.55 16 31 H 0.16 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.15 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.17 -0.52 8.14 -2.39 -0.02 -0.54 16 34 H 0.17 -0.49 8.14 -2.39 -0.02 -0.51 16 35 H 0.07 3.44 6.14 -2.39 -0.01 3.42 16 36 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 37 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 38 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.07 2.52 7.96 -2.38 -0.02 2.50 16 40 H 0.06 1.66 6.25 -2.39 -0.01 1.65 16 41 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -80.41 354.81 2.74 -77.68 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: 0.38 Total: 6.18 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: 6.60 Total: 21.04 kcal Atomic # 7 Polarization: -108.99 SS G_CDS: -3.57 Total: -112.55 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -1.53 Total: -33.03 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.18 Total: -4.68 kcal Total: -80.41 2.74 -77.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107752515.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.552 kcal (2) G-P(sol) polarization free energy of solvation -80.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds