Wall clock time and date at job start Fri Apr 10 2020 18:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81395 * 102.99870 * 2 1 4 4 C 1.50704 * 109.47243 * 180.02562 * 3 2 1 5 5 O 1.21277 * 119.99597 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00189 * 180.02562 * 4 3 2 7 7 C 1.46496 * 119.99971 * 179.97438 * 6 4 3 8 8 H 1.08997 * 110.88483 * 328.80713 * 7 6 4 9 9 C 1.54861 * 110.99877 * 92.72577 * 7 6 4 10 10 C 1.51282 * 104.20513 * 93.26571 * 9 7 6 11 11 O 1.21284 * 124.94166 * 196.28279 * 10 9 7 12 12 N 1.34415 * 110.11730 * 16.26751 * 10 9 7 13 13 C 1.46506 * 124.35027 * 180.42850 * 12 10 9 14 14 C 1.53940 * 113.74099 * 36.64905 * 13 12 10 15 15 N 1.47581 * 86.11876 * 222.04891 * 14 13 12 16 16 C 1.36938 * 134.49839 * 204.64049 * 15 14 13 17 17 H 1.07994 * 120.00498 * 180.02562 * 16 15 14 18 18 C 1.38812 * 119.99417 * 359.97438 * 16 15 14 19 19 N 1.31622 * 120.00457 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99926 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47195 * 89.99925 * 20 18 16 22 22 H 1.48497 * 109.47301 * 210.00000 * 20 18 16 23 23 H 1.48504 * 109.46882 * 330.00144 * 20 18 16 24 24 C 1.47582 * 91.01571 * 24.64151 * 15 14 13 25 25 C 1.46760 * 111.30303 * 0.40627 * 12 10 9 26 26 H 1.08997 * 109.47369 * 60.00391 * 1 2 3 27 27 H 1.09001 * 109.46874 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47166 * 300.00136 * 1 2 3 29 29 H 1.09003 * 109.47576 * 59.99466 * 3 2 1 30 30 H 1.09000 * 109.47017 * 299.99835 * 3 2 1 31 31 H 0.96994 * 119.99906 * 359.97438 * 6 4 3 32 32 H 1.08998 * 110.46775 * 334.59474 * 9 7 6 33 33 H 1.08993 * 110.60550 * 212.00627 * 9 7 6 34 34 H 1.08999 * 112.94768 * 168.38613 * 13 12 10 35 35 H 1.09000 * 113.77393 * 336.34703 * 14 13 12 36 36 H 1.09001 * 113.77359 * 107.75006 * 14 13 12 37 37 H 0.97001 * 119.99873 * 179.97438 * 19 18 16 38 38 H 1.08994 * 113.77000 * 221.06091 * 24 15 14 39 39 H 1.09003 * 113.77196 * 89.65881 * 24 15 14 40 40 H 1.09002 * 110.24740 * 101.98470 * 25 12 10 41 41 H 1.09002 * 110.24616 * 223.89995 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9374 -0.0006 5 8 4.4404 0.9621 -0.0006 6 7 4.2575 3.1731 -0.0002 7 6 5.7131 3.3382 -0.0003 8 1 6.1975 2.5162 0.5268 9 6 6.2567 3.4696 -1.4444 10 6 6.2998 4.9616 -1.6905 11 8 6.3978 5.4832 -2.7811 12 7 6.2135 5.6252 -0.5248 13 6 6.2165 7.0851 -0.4023 14 6 5.4689 7.8040 -1.5399 15 7 6.5889 8.7651 -1.5333 16 6 6.7335 10.0729 -1.9126 17 1 7.6885 10.5648 -1.8022 18 6 5.6526 10.7661 -2.4400 19 7 4.4887 10.1665 -2.5751 20 14 5.8496 12.5504 -2.9568 21 1 6.2652 12.6102 -4.3813 22 1 4.5562 13.2602 -2.7884 23 1 6.8841 13.1992 -2.1117 24 6 7.4905 7.7506 -0.9538 25 6 6.1152 4.6993 0.6097 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8031 2.2372 0.8899 30 1 1.8031 2.2370 -0.8900 31 1 3.6809 3.9530 0.0001 32 1 5.5823 2.9858 -2.1510 33 1 7.2564 3.0417 -1.5184 34 1 5.9381 7.4286 0.5939 35 1 5.3973 7.2192 -2.4570 36 1 4.5164 8.2373 -1.2347 37 1 3.7334 10.6511 -2.9433 38 1 8.1520 8.1412 -0.1806 39 1 8.0127 7.1501 -1.6986 40 1 7.0780 4.6171 1.1140 41 1 5.3515 5.0395 1.3091 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108500605.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:51 Heat of formation + Delta-G solvation = -22.958909 kcal Electronic energy + Delta-G solvation = -23834.532235 eV Core-core repulsion = 20263.143507 eV Total energy + Delta-G solvation = -3571.388728 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.93423 -40.53194 -38.93965 -37.61867 -35.14989 -34.15762 -32.23232 -30.62986 -29.55298 -29.13857 -28.18315 -26.60796 -25.24750 -23.04105 -22.10301 -21.71576 -19.75109 -18.79902 -18.38635 -18.10613 -17.66459 -17.04031 -16.99142 -16.60343 -16.19034 -15.90435 -15.54502 -15.14856 -14.86437 -14.76167 -14.57507 -14.47713 -14.17739 -14.07992 -13.59145 -13.42803 -13.32179 -13.24111 -13.08574 -12.83738 -12.73612 -12.66139 -12.42751 -12.02732 -11.89047 -11.53021 -11.10371 -11.05444 -10.91905 -10.64009 -10.17155 -9.56379 -8.93894 -8.67216 -7.93265 -5.27499 0.52581 1.42810 1.46242 1.49292 1.54635 1.62399 1.64992 1.98646 2.12646 2.48047 3.25033 3.34806 3.45880 3.48785 3.68761 3.79624 3.84817 4.10312 4.23283 4.26301 4.30962 4.39254 4.40138 4.53994 4.63015 4.69366 4.76942 4.81185 4.87921 4.92887 4.94988 5.21542 5.23555 5.38884 5.48116 5.86529 5.90270 6.27311 6.38802 6.88633 7.10877 7.25753 7.57019 8.52556 9.23777 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.022001 B = 0.002732 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.380126 B =10246.297053 C =11039.470913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.262 6.262 3 C -0.117 4.117 4 C 0.534 3.466 5 O -0.556 6.556 6 N -0.709 5.709 7 C 0.146 3.854 8 H 0.135 0.865 9 C -0.156 4.156 10 C 0.501 3.499 11 O -0.576 6.576 12 N -0.606 5.606 13 C 0.138 3.862 14 C 0.148 3.852 15 N -0.636 5.636 16 C -0.237 4.237 17 H 0.085 0.915 18 C -0.069 4.069 19 N -0.952 5.952 20 Si 0.983 3.017 21 H -0.292 1.292 22 H -0.289 1.289 23 H -0.263 1.263 24 C 0.110 3.890 25 C 0.097 3.903 26 H 0.086 0.914 27 H 0.111 0.889 28 H 0.092 0.908 29 H 0.140 0.860 30 H 0.128 0.872 31 H 0.415 0.585 32 H 0.093 0.907 33 H 0.130 0.870 34 H 0.139 0.861 35 H 0.023 0.977 36 H 0.043 0.957 37 H 0.249 0.751 38 H 0.068 0.932 39 H 0.021 0.979 40 H 0.116 0.884 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.975 -19.267 12.982 23.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.038 6.038 3 C -0.267 4.267 4 C 0.320 3.680 5 O -0.434 6.434 6 N -0.362 5.362 7 C 0.040 3.960 8 H 0.153 0.847 9 C -0.197 4.197 10 C 0.290 3.710 11 O -0.455 6.455 12 N -0.339 5.339 13 C 0.035 3.965 14 C 0.022 3.978 15 N -0.363 5.363 16 C -0.365 4.365 17 H 0.102 0.898 18 C -0.262 4.262 19 N -0.601 5.601 20 Si 0.811 3.189 21 H -0.219 1.219 22 H -0.215 1.215 23 H -0.188 1.188 24 C -0.016 4.016 25 C -0.025 4.025 26 H 0.105 0.895 27 H 0.129 0.871 28 H 0.111 0.889 29 H 0.158 0.842 30 H 0.146 0.854 31 H 0.252 0.748 32 H 0.111 0.889 33 H 0.148 0.852 34 H 0.156 0.844 35 H 0.041 0.959 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.086 0.914 39 H 0.039 0.961 40 H 0.134 0.866 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.832 -20.171 12.351 24.141 hybrid contribution -1.084 2.498 -1.166 2.962 sum -5.916 -17.673 11.186 21.736 Atomic orbital electron populations 1.23551 0.91822 1.07633 1.06173 1.87764 1.09155 1.08662 1.98263 1.23505 0.95757 0.97905 1.09547 1.20023 0.89844 0.83007 0.75140 1.90751 1.63045 1.39602 1.49992 1.45884 1.07425 1.08071 1.74809 1.21906 0.80867 0.98981 0.94207 0.84689 1.22833 1.05703 0.91569 0.99608 1.21531 0.74843 0.91024 0.83554 1.90759 1.51332 1.75222 1.28207 1.48479 1.71766 1.05639 1.08009 1.23362 0.96288 0.76519 1.00373 1.22565 0.92588 0.87612 0.94997 1.46121 1.09469 1.06679 1.74030 1.19425 0.96588 0.85588 1.34937 0.89773 1.25712 0.95589 1.02961 1.01898 1.70030 1.01336 1.37331 1.51399 0.85017 0.77044 0.79047 0.77828 1.21904 1.21546 1.18752 1.23029 0.94309 0.89155 0.95104 1.22707 1.05232 0.86290 0.88298 0.89484 0.87087 0.88938 0.84164 0.85425 0.74819 0.88884 0.85182 0.84389 0.95927 0.93873 0.94245 0.91365 0.96106 0.86567 0.87056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 10.76 113.37 1.22 0.11 16 2 S -0.26 -4.62 21.52 -56.49 -1.22 -5.83 16 3 C -0.12 -1.46 6.42 71.24 0.46 -1.00 16 4 C 0.53 9.46 7.85 87.66 0.69 10.15 16 5 O -0.56 -14.39 15.51 -3.02 -0.05 -14.44 16 6 N -0.71 -9.97 5.13 -437.17 -2.24 -12.21 16 7 C 0.15 2.15 3.54 46.13 0.16 2.32 16 8 H 0.14 1.75 7.54 -2.39 -0.02 1.73 16 9 C -0.16 -3.34 6.59 30.67 0.20 -3.14 16 10 C 0.50 16.15 7.44 87.90 0.65 16.80 16 11 O -0.58 -26.35 14.63 -3.04 -0.04 -26.39 16 12 N -0.61 -16.17 3.15 -799.70 -2.52 -18.69 16 13 C 0.14 4.84 4.82 46.75 0.23 5.07 16 14 C 0.15 7.42 6.88 86.48 0.60 8.01 16 15 N -0.64 -34.39 3.70 -717.35 -2.65 -37.04 16 16 C -0.24 -13.86 10.70 84.03 0.90 -12.96 16 17 H 0.08 4.68 7.83 -2.91 -0.02 4.66 16 18 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 19 N -0.95 -59.24 11.38 21.65 0.25 -59.00 16 20 Si 0.98 46.83 29.55 68.60 2.03 48.86 16 21 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 24 C 0.11 4.64 8.45 86.48 0.73 5.37 16 25 C 0.10 1.34 6.97 86.83 0.60 1.95 16 26 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.41 4.62 8.66 -92.71 -0.80 3.82 16 32 H 0.09 2.20 8.09 -2.39 -0.02 2.18 16 33 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.14 4.01 8.14 -2.39 -0.02 3.99 16 35 H 0.02 1.31 5.60 -2.39 -0.01 1.29 16 36 H 0.04 2.34 7.15 -2.39 -0.02 2.32 16 37 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 38 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.02 0.97 7.39 -2.39 -0.02 0.95 16 40 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.11 1.07 8.09 -2.39 -0.02 1.05 16 Total: -1.00 -87.20 353.75 0.70 -86.50 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 0.24 Total: 9.13 kcal Atomic # 6 Polarization: 22.21 SS G_CDS: 6.91 Total: 29.12 kcal Atomic # 7 Polarization: -119.76 SS G_CDS: -7.17 Total: -126.93 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -0.09 Total: -40.84 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Atomic # 16 Polarization: -4.62 SS G_CDS: -1.22 Total: -5.83 kcal Total: -87.20 0.70 -86.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108500605.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.537 kcal (2) G-P(sol) polarization free energy of solvation -87.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds