Wall clock time and date at job start Fri Apr 10 2020 18:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81403 * 102.99673 * 2 1 4 4 C 1.50704 * 109.46873 * 179.97438 * 3 2 1 5 5 O 1.21286 * 120.00070 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99702 * 179.97438 * 4 3 2 7 7 C 1.46506 * 119.99514 * 180.02562 * 6 4 3 8 8 H 1.08990 * 115.52015 * 9.57717 * 7 6 4 9 9 C 1.53006 * 117.40591 * 224.21326 * 7 6 4 10 10 H 1.09003 * 119.52038 * 4.07487 * 9 7 6 11 11 C 1.54376 * 118.12820 * 160.66903 * 9 7 6 12 12 N 1.48565 * 104.59130 * 87.23144 * 11 9 7 13 13 C 1.46907 * 110.99899 * 200.95940 * 12 11 9 14 14 C 1.50696 * 109.46951 * 169.99884 * 13 12 11 15 15 O 1.21292 * 119.99912 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99780 * 179.97438 * 14 13 12 17 17 C 1.37098 * 119.99856 * 180.02562 * 16 14 13 18 18 H 1.08002 * 120.00228 * 0.02562 * 17 16 14 19 19 C 1.38951 * 120.00002 * 180.02562 * 17 16 14 20 20 N 1.31411 * 119.99554 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00045 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47356 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47186 * 119.99842 * 21 19 17 24 24 H 1.48498 * 109.47283 * 239.99648 * 21 19 17 25 25 C 1.52142 * 104.44326 * 320.24918 * 12 11 9 26 26 C 1.53003 * 117.44008 * 155.00123 * 7 6 4 27 27 H 1.09002 * 119.52639 * 355.86124 * 26 7 6 28 28 H 1.09003 * 109.46769 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47440 * 300.00023 * 1 2 3 30 30 H 1.08997 * 109.47232 * 60.00359 * 1 2 3 31 31 H 1.08996 * 109.47436 * 59.99970 * 3 2 1 32 32 H 1.09001 * 109.46981 * 299.99485 * 3 2 1 33 33 H 0.96999 * 120.00480 * 359.97438 * 6 4 3 34 34 H 1.08999 * 110.41445 * 206.00579 * 11 9 7 35 35 H 1.08997 * 110.41468 * 328.33472 * 11 9 7 36 36 H 1.08998 * 109.46479 * 289.99972 * 13 12 11 37 37 H 1.08997 * 109.46566 * 50.00026 * 13 12 11 38 38 H 0.97002 * 119.99770 * 0.02562 * 16 14 13 39 39 H 0.97001 * 119.99699 * 179.97438 * 20 19 17 40 40 H 1.08997 * 110.22960 * 281.87154 * 25 12 11 41 41 H 1.09003 * 112.21772 * 158.30499 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7194 1.9374 0.0006 5 8 4.4404 0.9621 0.0015 6 7 4.2574 3.1731 0.0002 7 6 5.7131 3.3382 0.0003 8 1 6.2890 2.4274 -0.1630 9 6 6.3031 4.3853 0.9471 10 1 5.6457 4.9218 1.6314 11 6 7.8002 4.2785 1.3085 12 7 8.4994 5.0264 0.2320 13 6 9.9079 4.6199 0.1379 14 6 10.5184 5.2083 -1.1079 15 8 9.8464 5.8988 -1.8446 16 7 11.8114 4.9681 -1.4028 17 6 12.3669 5.5039 -2.5359 18 1 11.7686 6.1187 -3.1920 19 6 13.6998 5.2559 -2.8403 20 7 14.4279 4.5082 -2.0418 21 14 14.4570 5.9864 -4.3838 22 1 13.4347 6.7852 -5.1063 23 1 15.5956 6.8631 -4.0094 24 1 14.9428 4.8923 -5.2624 25 6 7.7475 4.6555 -1.0377 26 6 6.2751 4.6403 -0.5740 27 1 5.5969 5.3666 -1.0221 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8031 2.2372 0.8899 32 1 1.8031 2.2371 -0.8900 33 1 3.6808 3.9532 -0.0009 34 1 7.9912 4.7396 2.2775 35 1 8.1160 3.2353 1.3160 36 1 10.4491 4.9800 1.0128 37 1 9.9701 3.5325 0.0943 38 1 12.3489 4.4162 -0.8134 39 1 15.3583 4.3347 -2.2544 40 1 8.0490 3.6650 -1.3785 41 1 7.8890 5.3905 -1.8301 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113832168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:09 Heat of formation + Delta-G solvation = -46.300916 kcal Electronic energy + Delta-G solvation = -22884.806230 eV Core-core repulsion = 19312.405317 eV Total energy + Delta-G solvation = -3572.400914 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.45093 -40.45860 -39.55494 -36.36765 -35.74658 -33.87835 -33.25830 -31.06918 -29.60600 -29.39195 -28.81731 -26.52658 -23.87225 -22.09146 -21.84195 -21.31248 -20.92428 -19.84968 -18.38094 -18.12057 -17.65764 -17.10133 -16.67365 -16.59079 -16.29625 -16.25734 -15.60370 -15.27296 -14.92790 -14.77618 -14.58487 -14.55802 -14.16886 -13.89096 -13.60458 -13.46708 -13.39213 -13.16837 -13.06322 -12.90087 -12.49868 -12.43942 -12.41140 -12.11181 -11.95410 -11.49677 -11.24260 -11.07643 -10.92269 -10.24197 -10.02917 -9.86410 -9.43624 -8.71677 -8.47927 -5.96626 0.47447 1.35669 1.37712 1.41017 1.55324 1.63425 1.89069 2.02056 2.27604 2.62310 2.82217 3.18850 3.28324 3.49088 3.62522 3.70686 3.82747 4.07236 4.10700 4.22922 4.26787 4.27284 4.39102 4.39459 4.42233 4.49940 4.53625 4.62348 4.77002 4.94016 4.95870 5.10176 5.22822 5.37902 5.40383 5.65477 5.84998 6.05655 6.36235 6.58517 7.08422 7.11232 7.53700 8.08924 8.69815 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.027906 B = 0.002082 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.142762 B =13443.339511 C =13807.525760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.277 6.277 3 C -0.106 4.106 4 C 0.528 3.472 5 O -0.568 6.568 6 N -0.678 5.678 7 C 0.108 3.892 8 H 0.106 0.894 9 C -0.148 4.148 10 H 0.149 0.851 11 C 0.056 3.944 12 N -0.501 5.501 13 C 0.042 3.958 14 C 0.440 3.560 15 O -0.613 6.613 16 N -0.573 5.573 17 C -0.332 4.332 18 H 0.081 0.919 19 C -0.015 4.015 20 N -0.921 5.921 21 Si 0.994 3.006 22 H -0.272 1.272 23 H -0.270 1.270 24 H -0.272 1.272 25 C 0.067 3.933 26 C -0.163 4.163 27 H 0.137 0.863 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.423 0.577 34 H 0.109 0.891 35 H 0.046 0.954 36 H 0.113 0.887 37 H 0.064 0.936 38 H 0.396 0.604 39 H 0.277 0.723 40 H 0.026 0.974 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.231 -3.963 8.720 28.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.053 6.053 3 C -0.256 4.256 4 C 0.314 3.686 5 O -0.446 6.446 6 N -0.329 5.329 7 C 0.000 4.000 8 H 0.124 0.876 9 C -0.168 4.168 10 H 0.166 0.834 11 C -0.071 4.071 12 N -0.226 5.226 13 C -0.090 4.090 14 C 0.227 3.773 15 O -0.499 6.499 16 N -0.210 5.210 17 C -0.461 4.461 18 H 0.099 0.901 19 C -0.214 4.214 20 N -0.562 5.562 21 Si 0.818 3.182 22 H -0.197 1.197 23 H -0.196 1.196 24 H -0.197 1.197 25 C -0.060 4.060 26 C -0.183 4.183 27 H 0.154 0.846 28 H 0.127 0.873 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.163 0.837 32 H 0.159 0.841 33 H 0.262 0.738 34 H 0.127 0.873 35 H 0.064 0.936 36 H 0.131 0.869 37 H 0.082 0.918 38 H 0.229 0.771 39 H 0.087 0.913 40 H 0.044 0.956 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -26.296 -4.542 8.329 27.955 hybrid contribution 0.242 0.430 -0.704 0.859 sum -26.054 -4.112 7.625 27.456 Atomic orbital electron populations 1.23544 0.91124 1.07663 1.06424 1.88020 1.09822 1.09155 1.98303 1.23438 0.94238 0.97742 1.10182 1.20323 0.90407 0.82771 0.75065 1.90773 1.63503 1.40130 1.50181 1.44982 1.05449 1.08331 1.74138 1.21547 0.81885 0.93999 1.02554 0.87587 1.24000 0.96730 1.02812 0.93257 0.83369 1.22777 0.91303 0.96785 0.96276 1.66372 1.00067 1.52357 1.03798 1.21991 0.91311 0.98720 0.96930 1.20653 0.82539 0.85072 0.88998 1.90442 1.61658 1.43806 1.53975 1.41936 1.09680 1.46198 1.23203 1.19713 0.95016 1.29721 1.01665 0.90120 1.26071 0.96149 0.97128 1.02085 1.69686 1.09322 1.38319 1.38871 0.84848 0.77968 0.78096 0.77287 1.19677 1.19557 1.19723 1.23226 0.90485 0.98820 0.93497 1.23863 0.96908 0.99904 0.97663 0.84561 0.87290 0.88756 0.88963 0.83734 0.84136 0.73836 0.87315 0.93561 0.86867 0.91790 0.77073 0.91314 0.95574 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.76 113.37 1.22 0.38 16 2 S -0.28 -4.83 21.52 -56.49 -1.22 -6.05 16 3 C -0.11 -1.14 6.42 71.24 0.46 -0.68 16 4 C 0.53 10.32 7.85 87.66 0.69 11.01 16 5 O -0.57 -17.60 15.43 -3.05 -0.05 -17.65 16 6 N -0.68 -10.30 5.56 -442.51 -2.46 -12.76 16 7 C 0.11 2.33 5.97 44.99 0.27 2.60 16 8 H 0.11 3.00 7.40 -2.39 -0.02 2.98 16 9 C -0.15 -2.94 7.05 -9.90 -0.07 -3.01 16 10 H 0.15 2.11 8.14 -2.39 -0.02 2.09 16 11 C 0.06 1.35 6.31 86.45 0.55 1.90 16 12 N -0.50 -16.52 5.39 -875.67 -4.72 -21.24 16 13 C 0.04 1.52 5.58 85.55 0.48 2.00 16 14 C 0.44 21.26 7.49 87.66 0.66 21.91 16 15 O -0.61 -33.51 13.27 -3.07 -0.04 -33.55 16 16 N -0.57 -29.93 5.29 -306.98 -1.62 -31.55 16 17 C -0.33 -19.02 9.68 84.04 0.81 -18.21 16 18 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 19 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 20 N -0.92 -50.40 13.05 21.66 0.28 -50.12 16 21 Si 0.99 43.41 29.55 68.60 2.03 45.44 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 25 C 0.07 2.27 5.27 85.73 0.45 2.72 16 26 C -0.16 -3.85 6.96 -9.90 -0.07 -3.92 16 27 H 0.14 2.68 8.14 -2.39 -0.02 2.67 16 28 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.14 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.42 3.02 8.83 -92.71 -0.82 2.20 16 34 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.05 1.13 7.82 -2.39 -0.02 1.11 16 36 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 37 H 0.06 2.13 7.88 -2.39 -0.02 2.11 16 38 H 0.40 19.74 7.90 -92.71 -0.73 19.01 16 39 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 40 H 0.03 0.95 8.03 -2.39 -0.02 0.93 16 41 H 0.09 3.56 6.21 -2.39 -0.01 3.55 16 Total: -1.00 -77.84 358.01 -2.37 -80.21 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: -0.49 Total: 30.90 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: 5.91 Total: 16.37 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -8.52 Total: -115.67 kcal Atomic # 8 Polarization: -51.11 SS G_CDS: -0.09 Total: -51.20 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -4.83 SS G_CDS: -1.22 Total: -6.05 kcal Total: -77.84 -2.37 -80.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113832168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.910 kcal (2) G-P(sol) polarization free energy of solvation -77.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds