Wall clock time and date at job start Fri Apr 10 2020 18:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34783 * 119.99613 * 2 1 4 4 O 1.21274 * 119.99895 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99928 * 180.02562 * 3 2 1 6 6 N 1.46897 * 109.47027 * 180.02562 * 5 3 2 7 7 C 1.48566 * 110.99882 * 305.41542 * 6 5 3 8 8 C 1.57594 * 104.65451 * 200.33939 * 7 6 5 9 9 H 1.09003 * 120.23992 * 244.57426 * 8 7 6 10 10 C 1.54264 * 103.52657 * 24.69235 * 8 7 6 11 11 H 1.09003 * 121.78590 * 220.66983 * 10 8 7 12 12 C 1.48559 * 110.99824 * 189.99832 * 6 5 3 13 13 C 1.53003 * 59.72727 * 112.63231 * 10 8 7 14 14 H 1.08992 * 117.44261 * 252.39809 * 13 10 8 15 15 N 1.46496 * 117.44108 * 107.64278 * 13 10 8 16 16 C 1.34774 * 119.99544 * 155.00191 * 15 13 10 17 17 O 1.21279 * 120.00472 * 0.02562 * 16 15 13 18 18 C 1.50706 * 120.00020 * 180.02562 * 16 15 13 19 19 S 1.81002 * 109.47200 * 179.97438 * 18 16 15 20 20 C 1.76198 * 99.99878 * 179.97438 * 19 18 16 21 21 H 1.08006 * 120.00031 * 359.97438 * 20 19 18 22 22 C 1.38801 * 120.00096 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99737 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99933 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47409 * 89.99815 * 24 22 20 26 26 H 1.48504 * 109.46732 * 209.99538 * 24 22 20 27 27 H 1.48503 * 109.47095 * 329.99265 * 24 22 20 28 28 H 1.08997 * 109.46515 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46948 * 299.99502 * 1 2 3 30 30 H 1.08992 * 109.47101 * 59.99849 * 1 2 3 31 31 H 0.97001 * 120.00535 * 180.02562 * 2 1 3 32 32 H 1.08993 * 109.47362 * 60.00038 * 5 3 2 33 33 H 1.09005 * 109.46447 * 300.00017 * 5 3 2 34 34 H 1.09001 * 110.40801 * 319.74068 * 7 6 5 35 35 H 1.08998 * 110.40961 * 82.06027 * 7 6 5 36 36 H 1.09000 * 110.41080 * 40.26456 * 12 6 5 37 37 H 1.08992 * 110.41124 * 277.81425 * 12 6 5 38 38 H 0.96994 * 120.00700 * 335.00311 * 15 13 10 39 39 H 1.09001 * 109.46953 * 299.99667 * 18 16 15 40 40 H 1.09000 * 109.47318 * 59.99264 * 18 16 15 41 41 H 0.97001 * 119.99701 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6459 1.1674 -0.0006 6 7 4.1354 2.5524 0.0002 7 6 3.5546 3.3230 -1.1295 8 6 4.5307 4.5452 -1.3220 9 1 4.1791 5.5616 -1.1449 10 6 5.8664 4.0349 -0.7430 11 1 6.5092 4.6715 -0.1350 12 6 5.6005 2.5993 -0.2412 13 6 5.7310 4.3118 -2.2417 14 1 5.6913 3.4517 -2.9098 15 7 6.4133 5.4938 -2.7741 16 6 6.7685 5.5385 -4.0735 17 8 6.5228 4.6006 -4.8020 18 6 7.4709 6.7542 -4.6212 19 16 7.8128 6.5112 -6.3820 20 6 8.6119 8.0374 -6.7519 21 1 8.7518 8.7757 -5.9760 22 6 9.0606 8.2914 -8.0406 23 7 8.8896 7.3918 -8.9862 24 14 9.9084 9.9091 -8.4325 25 1 11.3708 9.7663 -8.2180 26 1 9.6491 10.2734 -9.8486 27 1 9.3791 10.9736 -7.5426 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.9501 -0.8400 -0.0004 32 1 4.0089 0.6538 -0.8908 33 1 4.0095 0.6533 0.8892 34 1 3.5179 2.7089 -2.0293 35 1 2.5573 3.6801 -0.8729 36 1 5.8839 1.8721 -1.0021 37 1 6.1445 2.4135 0.6849 38 1 6.6095 6.2441 -2.1917 39 1 6.8354 7.6302 -4.4917 40 1 8.4089 6.9036 -4.0865 41 1 9.2035 7.5692 -9.8867 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113890896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:13 Heat of formation + Delta-G solvation = -51.863024 kcal Electronic energy + Delta-G solvation = -22651.961155 eV Core-core repulsion = 19079.319051 eV Total energy + Delta-G solvation = -3572.642105 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.56214 -40.67327 -39.71319 -36.28952 -35.56882 -34.59026 -33.86951 -30.86929 -29.50339 -29.24871 -27.68191 -26.73597 -23.76237 -22.05971 -21.88149 -21.50992 -21.24678 -19.82488 -18.21469 -18.00304 -17.77521 -17.22484 -16.88325 -16.69301 -16.41092 -16.28189 -15.73806 -15.46340 -15.16007 -14.84750 -14.53077 -14.28581 -14.10871 -13.88203 -13.70522 -13.28890 -13.23364 -13.17196 -13.08463 -12.89395 -12.63167 -12.57226 -12.37137 -11.97939 -11.75022 -11.18312 -11.14511 -11.01820 -10.73315 -10.29223 -10.13738 -9.81199 -9.50758 -8.67702 -8.35152 -6.13452 1.23569 1.42615 1.44857 1.47597 1.56145 1.60550 2.03013 2.19172 2.26909 2.68423 2.99114 2.99734 3.28889 3.55347 3.67626 3.76305 3.83808 3.86837 4.05293 4.25143 4.28651 4.29070 4.40210 4.44412 4.46911 4.48854 4.57626 4.62694 4.80949 4.93585 4.95688 5.09697 5.12165 5.41726 5.43787 5.47952 5.66181 5.84310 6.19544 6.42239 6.56093 7.06183 7.16735 7.27662 8.74094 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.036208 B = 0.002019 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.127925 B =13863.939573 C =14186.616448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.724 5.724 3 C 0.503 3.497 4 O -0.570 6.570 5 C 0.023 3.977 6 N -0.504 5.504 7 C 0.067 3.933 8 C -0.171 4.171 9 H 0.129 0.871 10 C -0.149 4.149 11 H 0.140 0.860 12 C 0.064 3.936 13 C 0.094 3.906 14 H 0.109 0.891 15 N -0.683 5.683 16 C 0.540 3.460 17 O -0.563 6.563 18 C -0.129 4.129 19 S -0.150 6.150 20 C -0.547 4.547 21 H 0.084 0.916 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.267 1.267 26 H -0.278 1.278 27 H -0.258 1.258 28 H 0.110 0.890 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.420 0.580 32 H 0.084 0.916 33 H 0.139 0.861 34 H 0.033 0.967 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.115 0.885 38 H 0.419 0.581 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.696 -14.529 24.573 30.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.378 5.378 3 C 0.290 3.710 4 O -0.448 6.448 5 C -0.107 4.107 6 N -0.228 5.228 7 C -0.061 4.061 8 C -0.192 4.192 9 H 0.146 0.854 10 C -0.169 4.169 11 H 0.158 0.842 12 C -0.064 4.064 13 C -0.013 4.013 14 H 0.126 0.874 15 N -0.335 5.335 16 C 0.326 3.674 17 O -0.441 6.441 18 C -0.280 4.280 19 S 0.077 5.923 20 C -0.694 4.694 21 H 0.102 0.898 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.192 1.192 26 H -0.203 1.203 27 H -0.182 1.182 28 H 0.129 0.871 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.256 0.744 32 H 0.102 0.898 33 H 0.156 0.844 34 H 0.051 0.949 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.133 0.867 38 H 0.257 0.743 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.685 -15.189 23.730 30.502 hybrid contribution 0.991 1.470 -0.428 1.824 sum -10.694 -13.719 23.302 29.078 Atomic orbital electron populations 1.21621 0.79028 1.04104 1.01149 1.45722 1.08276 1.08691 1.75086 1.20992 0.90884 0.83803 0.75327 1.90670 1.71180 1.32637 1.50346 1.22354 0.90968 0.91679 1.05731 1.65473 1.04823 1.10630 1.41890 1.23238 0.98754 0.92777 0.91318 1.24703 0.90084 1.00217 1.04153 0.85354 1.23951 1.00450 0.98866 0.93668 0.84206 1.22779 0.88050 0.93747 1.01775 1.21687 0.97380 0.90292 0.91902 0.87362 1.45022 1.59410 1.19860 1.09191 1.20100 0.77644 0.87635 0.82007 1.90684 1.55470 1.39068 1.58852 1.23363 1.04198 0.99275 1.01135 1.85587 1.76741 1.26675 1.03311 1.23212 1.44114 1.03136 0.98977 0.89807 1.26142 0.96224 1.01982 0.94867 1.70185 1.45355 1.36458 1.02767 0.84938 0.78375 0.76875 0.77691 1.19227 1.20339 1.18222 0.87148 0.93234 0.93788 0.74363 0.89793 0.84378 0.94921 0.88969 0.92674 0.86681 0.74321 0.87072 0.86782 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 10.70 127.77 1.37 2.16 16 2 N -0.72 -7.02 5.71 -484.52 -2.77 -9.79 16 3 C 0.50 8.51 7.54 87.66 0.66 9.17 16 4 O -0.57 -15.13 13.66 -3.01 -0.04 -15.17 16 5 C 0.02 0.28 5.55 85.56 0.47 0.76 16 6 N -0.50 -8.95 5.34 -879.14 -4.69 -13.64 16 7 C 0.07 1.52 5.17 87.61 0.45 1.97 16 8 C -0.17 -3.67 7.33 -8.74 -0.06 -3.74 16 9 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 10 C -0.15 -2.60 6.97 -9.89 -0.07 -2.67 16 11 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 12 C 0.06 0.92 6.30 86.45 0.54 1.47 16 13 C 0.09 2.31 5.92 44.99 0.27 2.58 16 14 H 0.11 3.22 7.40 -2.39 -0.02 3.20 16 15 N -0.68 -17.91 5.56 -442.54 -2.46 -20.37 16 16 C 0.54 20.19 7.85 87.66 0.69 20.87 16 17 O -0.56 -26.46 15.43 -3.02 -0.05 -26.51 16 18 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 19 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 20 C -0.55 -31.25 9.50 67.95 0.65 -30.60 16 21 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 22 C 0.01 0.72 5.49 84.86 0.47 1.18 16 23 N -0.91 -56.13 13.22 21.65 0.29 -55.85 16 24 Si 1.00 43.66 29.55 68.60 2.03 45.68 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 26 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 27 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 28 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.42 0.95 8.83 -92.71 -0.82 0.13 16 32 H 0.08 0.78 7.88 -2.39 -0.02 0.76 16 33 H 0.14 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.03 0.79 8.00 -2.39 -0.02 0.77 16 35 H 0.09 2.52 6.04 -2.39 -0.01 2.51 16 36 H 0.06 0.78 7.82 -2.39 -0.02 0.76 16 37 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.42 7.93 8.83 -92.71 -0.82 7.11 16 39 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 40 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 41 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -84.51 359.04 -3.56 -88.07 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -0.57 Total: 18.60 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 5.87 Total: -1.49 kcal Atomic # 7 Polarization: -90.01 SS G_CDS: -9.64 Total: -99.65 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -0.09 Total: -41.67 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -84.51 -3.56 -88.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113890896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.205 kcal (2) G-P(sol) polarization free energy of solvation -84.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds