Wall clock time and date at job start Fri Apr 10 2020 18:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86798 * 120.00068 * 2 1 4 4 H 1.48494 * 109.46957 * 269.99707 * 3 2 1 5 5 H 1.48491 * 109.47252 * 30.00091 * 3 2 1 6 6 H 1.48503 * 109.46909 * 150.00162 * 3 2 1 7 7 C 1.38953 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99661 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99681 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99498 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99875 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99544 * 180.02562 * 10 9 7 13 13 S 1.81006 * 109.46882 * 179.97438 * 12 10 9 14 14 C 1.76195 * 99.99904 * 179.97438 * 13 12 10 15 15 N 1.31541 * 126.45423 * 0.18188 * 14 13 12 16 16 N 1.28426 * 110.49910 * 180.28763 * 15 14 13 17 17 N 1.28903 * 110.34238 * 359.72031 * 16 15 14 18 18 N 1.35401 * 126.45087 * 179.97438 * 14 13 12 19 19 C 1.46500 * 127.38363 * 359.97438 * 18 14 13 20 20 C 1.53175 * 109.54071 * 119.71235 * 19 18 14 21 21 C 1.53092 * 109.16344 * 176.84833 * 20 19 18 22 22 O 1.42905 * 109.41215 * 302.38824 * 21 20 19 23 23 C 1.42905 * 114.09831 * 61.16158 * 22 21 20 24 24 C 1.53098 * 109.41155 * 298.83847 * 23 22 21 25 25 H 0.97007 * 119.99835 * 0.02562 * 1 2 3 26 26 H 0.96993 * 120.00063 * 0.02562 * 9 7 2 27 27 H 1.08994 * 109.47584 * 59.99712 * 12 10 9 28 28 H 1.09000 * 109.46857 * 299.99295 * 12 10 9 29 29 H 1.08996 * 109.54248 * 359.53571 * 19 18 14 30 30 H 1.09004 * 109.52714 * 56.93853 * 20 19 18 31 31 H 1.09001 * 109.57654 * 296.78583 * 20 19 18 32 32 H 1.08997 * 109.48111 * 182.40965 * 21 20 19 33 33 H 1.09000 * 109.48212 * 62.37239 * 21 20 19 34 34 H 1.09000 * 109.47932 * 58.81878 * 23 22 21 35 35 H 1.08993 * 109.48024 * 178.86013 * 23 22 21 36 36 H 1.08996 * 109.52270 * 297.70307 * 24 23 22 37 37 H 1.08995 * 109.57012 * 177.54155 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4000 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0887 -1.2034 0.0010 9 7 1.3232 -2.3907 0.0016 10 6 1.9970 -3.5579 0.0026 11 8 3.2100 -3.5579 0.0022 12 6 1.2434 -4.8629 0.0032 13 16 2.4196 -6.2388 0.0038 14 6 1.2994 -7.5988 0.0052 15 7 -0.0142 -7.5295 0.0023 16 7 -0.5267 -8.7070 0.0105 17 7 0.4027 -9.6003 0.0132 18 7 1.6286 -8.9122 0.0056 19 6 2.9741 -9.4919 0.0044 20 6 3.1629 -10.3510 1.2584 21 6 4.5414 -11.0152 1.2097 22 8 4.6513 -11.7944 0.0168 23 6 4.5303 -11.0362 -1.1885 24 6 3.1513 -10.3729 -1.2361 25 1 -0.4850 0.8401 -0.0004 26 1 0.3533 -2.3906 0.0016 27 1 0.6171 -4.9213 -0.8869 28 1 0.6165 -4.9200 0.8931 29 1 3.7153 -8.6929 -0.0052 30 1 2.3897 -11.1186 1.2940 31 1 3.0927 -9.7221 2.1460 32 1 4.6643 -11.6616 2.0787 33 1 5.3151 -10.2475 1.2151 34 1 5.3039 -10.2688 -1.2144 35 1 4.6452 -11.6978 -2.0470 36 1 2.3780 -11.1409 -1.2510 37 1 3.0723 -9.7589 -2.1332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116015672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:25 Heat of formation + Delta-G solvation = 29.651475 kcal Electronic energy + Delta-G solvation = -22990.839510 eV Core-core repulsion = 19318.191796 eV Total energy + Delta-G solvation = -3672.647714 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.100 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.90475 -39.84619 -38.34827 -35.96134 -34.19945 -32.34560 -32.07031 -31.71707 -31.52152 -29.47327 -26.27550 -24.82985 -24.17495 -23.46943 -23.33300 -20.66299 -19.79845 -18.49100 -17.97998 -17.16306 -16.78942 -16.32063 -16.15773 -16.13343 -15.33236 -14.74109 -14.73646 -14.65914 -14.45771 -14.35036 -13.77792 -13.17130 -13.00182 -12.70366 -12.63204 -12.31192 -12.02449 -11.90942 -11.85160 -11.67211 -11.24351 -11.18937 -10.94443 -10.91950 -10.64017 -10.51070 -10.43494 -10.36727 -10.18139 -9.71600 -8.80981 -8.20899 -7.91458 -6.59293 -4.01821 0.75073 0.82754 1.89933 1.98526 2.20893 3.06268 3.18452 3.23560 3.36140 3.59904 3.76435 4.01992 4.02861 4.31431 4.34678 4.50466 4.66518 4.67667 4.67705 4.89259 4.99736 5.04678 5.16346 5.19198 5.21377 5.30838 5.44875 5.46385 5.50493 5.62692 5.67398 5.96358 5.97960 6.65403 7.38954 7.81608 8.33359 8.38938 8.95269 9.27679 9.74927 10.57227 Molecular weight = 313.10amu Principal moments of inertia in cm(-1) A = 0.025434 B = 0.002771 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.624347 B =10101.517712 C =10868.541218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.028 3.972 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.306 4.306 8 H 0.108 0.892 9 N -0.541 5.541 10 C 0.447 3.553 11 O -0.587 6.587 12 C -0.132 4.132 13 S 0.109 5.891 14 C 0.203 3.797 15 N -0.338 5.338 16 N -0.035 5.035 17 N -0.088 5.088 18 N -0.363 5.363 19 C 0.153 3.847 20 C -0.165 4.165 21 C 0.066 3.934 22 O -0.378 6.378 23 C 0.066 3.934 24 C -0.165 4.165 25 H 0.276 0.724 26 H 0.397 0.603 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.738 -19.150 0.016 20.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.436 4.436 8 H 0.125 0.875 9 N -0.175 5.175 10 C 0.231 3.769 11 O -0.474 6.474 12 C -0.284 4.284 13 S 0.334 5.666 14 C -0.181 4.181 15 N -0.194 5.194 16 N -0.031 5.031 17 N -0.075 5.075 18 N -0.162 5.162 19 C 0.050 3.950 20 C -0.204 4.204 21 C -0.012 4.012 22 O -0.297 6.297 23 C -0.012 4.012 24 C -0.203 4.203 25 H 0.086 0.914 26 H 0.231 0.769 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.134 0.866 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.124 0.876 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.124 0.876 36 H 0.109 0.891 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.270 -19.720 0.022 21.018 hybrid contribution -1.002 1.370 -0.013 1.697 sum 6.268 -18.350 0.009 19.391 Atomic orbital electron populations 1.69617 1.06064 1.28736 1.48711 1.25355 0.95684 1.00023 0.96519 0.85790 0.79262 0.80294 0.78586 1.20164 1.20723 1.19195 1.19761 0.93529 0.81740 1.48549 0.87470 1.41744 1.09558 1.04155 1.62067 1.18795 0.87782 0.83657 0.86693 1.90561 1.13121 1.86338 1.57359 1.23831 1.01216 0.94898 1.08485 1.86364 1.01527 0.88945 1.89781 1.28610 0.97697 0.92016 0.99805 1.74993 1.03352 1.16461 1.24608 1.77837 1.21927 0.94005 1.09345 1.82362 0.84875 1.17765 1.22526 1.51681 1.08557 1.03242 1.52760 1.21735 0.77837 0.97480 0.97920 1.22622 1.00582 1.00356 0.96835 1.22598 0.94299 0.95780 0.88514 1.87984 1.93049 1.35011 1.13633 1.22597 0.94268 0.96129 0.88192 1.22615 1.00599 1.00163 0.96972 0.91432 0.76893 0.86681 0.86684 0.86587 0.89109 0.89542 0.87645 0.92144 0.92148 0.87644 0.89098 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.23 13.05 55.50 0.72 -22.51 16 2 C 0.03 0.70 5.50 -17.47 -0.10 0.61 16 3 Si 0.93 19.99 29.55 -169.99 -5.02 14.97 16 4 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.31 -8.07 9.68 -14.93 -0.14 -8.22 16 8 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 9 N -0.54 -12.95 5.29 -10.96 -0.06 -13.01 16 10 C 0.45 9.83 7.80 -10.98 -0.09 9.74 16 11 O -0.59 -14.61 15.44 5.55 0.09 -14.53 16 12 C -0.13 -2.23 5.72 36.01 0.21 -2.03 16 13 S 0.11 1.62 20.58 -107.50 -2.21 -0.59 16 14 C 0.20 2.98 8.15 -89.17 -0.73 2.26 16 15 N -0.34 -5.65 11.57 30.50 0.35 -5.30 16 16 N -0.04 -0.59 13.38 60.35 0.81 0.21 16 17 N -0.09 -1.31 13.85 60.35 0.84 -0.48 16 18 N -0.36 -4.68 3.34 -54.62 -0.18 -4.86 16 19 C 0.15 1.42 3.11 -67.75 -0.21 1.20 16 20 C -0.17 -1.31 5.72 -26.59 -0.15 -1.46 16 21 C 0.07 0.42 6.84 37.20 0.25 0.67 16 22 O -0.38 -3.07 10.77 -35.23 -0.38 -3.45 16 23 C 0.07 0.42 6.84 37.21 0.25 0.67 16 24 C -0.16 -1.30 5.71 -26.59 -0.15 -1.46 16 25 H 0.28 6.78 8.31 -40.82 -0.34 6.45 16 26 H 0.40 9.13 7.90 -40.82 -0.32 8.81 16 27 H 0.11 1.81 8.14 -51.92 -0.42 1.39 16 28 H 0.11 1.81 8.14 -51.92 -0.42 1.39 16 29 H 0.12 0.97 7.33 -51.93 -0.38 0.59 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 335.31 15.07 5.05 5.05 Total: -1.00 -30.99 335.31 -5.29 -36.28 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -4.44 Total: 6.21 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -0.85 Total: 2.00 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: 2.48 Total: -45.94 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.29 Total: -17.98 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.21 Total: -0.59 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.99 -5.29 -36.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116015672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.928 kcal (2) G-P(sol) polarization free energy of solvation -30.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds