Wall clock time and date at job start Fri Apr 10 2020 18:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86798 * 120.00068 * 2 1 4 4 H 1.48494 * 109.46957 * 269.99707 * 3 2 1 5 5 H 1.48491 * 109.47252 * 30.00091 * 3 2 1 6 6 H 1.48503 * 109.46909 * 150.00162 * 3 2 1 7 7 C 1.38953 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99661 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99681 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99498 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99875 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99544 * 180.02562 * 10 9 7 13 13 S 1.81006 * 109.46882 * 179.97438 * 12 10 9 14 14 C 1.76195 * 99.99904 * 179.97438 * 13 12 10 15 15 N 1.31541 * 126.45423 * 0.18188 * 14 13 12 16 16 N 1.28426 * 110.49910 * 180.28763 * 15 14 13 17 17 N 1.28903 * 110.34238 * 359.72031 * 16 15 14 18 18 N 1.35401 * 126.45087 * 179.97438 * 14 13 12 19 19 C 1.46500 * 127.38363 * 359.97438 * 18 14 13 20 20 C 1.53175 * 109.54071 * 119.71235 * 19 18 14 21 21 C 1.53092 * 109.16344 * 176.84833 * 20 19 18 22 22 O 1.42905 * 109.41215 * 302.38824 * 21 20 19 23 23 C 1.42905 * 114.09831 * 61.16158 * 22 21 20 24 24 C 1.53098 * 109.41155 * 298.83847 * 23 22 21 25 25 H 0.97007 * 119.99835 * 0.02562 * 1 2 3 26 26 H 0.96993 * 120.00063 * 0.02562 * 9 7 2 27 27 H 1.08994 * 109.47584 * 59.99712 * 12 10 9 28 28 H 1.09000 * 109.46857 * 299.99295 * 12 10 9 29 29 H 1.08996 * 109.54248 * 359.53571 * 19 18 14 30 30 H 1.09004 * 109.52714 * 56.93853 * 20 19 18 31 31 H 1.09001 * 109.57654 * 296.78583 * 20 19 18 32 32 H 1.08997 * 109.48111 * 182.40965 * 21 20 19 33 33 H 1.09000 * 109.48212 * 62.37239 * 21 20 19 34 34 H 1.09000 * 109.47932 * 58.81878 * 23 22 21 35 35 H 1.08993 * 109.48024 * 178.86013 * 23 22 21 36 36 H 1.08996 * 109.52270 * 297.70307 * 24 23 22 37 37 H 1.08995 * 109.57012 * 177.54155 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4000 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0887 -1.2034 0.0010 9 7 1.3232 -2.3907 0.0016 10 6 1.9970 -3.5579 0.0026 11 8 3.2100 -3.5579 0.0022 12 6 1.2434 -4.8629 0.0032 13 16 2.4196 -6.2388 0.0038 14 6 1.2994 -7.5988 0.0052 15 7 -0.0142 -7.5295 0.0023 16 7 -0.5267 -8.7070 0.0105 17 7 0.4027 -9.6003 0.0132 18 7 1.6286 -8.9122 0.0056 19 6 2.9741 -9.4919 0.0044 20 6 3.1629 -10.3510 1.2584 21 6 4.5414 -11.0152 1.2097 22 8 4.6513 -11.7944 0.0168 23 6 4.5303 -11.0362 -1.1885 24 6 3.1513 -10.3729 -1.2361 25 1 -0.4850 0.8401 -0.0004 26 1 0.3533 -2.3906 0.0016 27 1 0.6171 -4.9213 -0.8869 28 1 0.6165 -4.9200 0.8931 29 1 3.7153 -8.6929 -0.0052 30 1 2.3897 -11.1186 1.2940 31 1 3.0927 -9.7221 2.1460 32 1 4.6643 -11.6616 2.0787 33 1 5.3151 -10.2475 1.2151 34 1 5.3039 -10.2688 -1.2144 35 1 4.6452 -11.6978 -2.0470 36 1 2.3780 -11.1409 -1.2510 37 1 3.0723 -9.7589 -2.1332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116015672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:24 Heat of formation + Delta-G solvation = 7.863795 kcal Electronic energy + Delta-G solvation = -22991.784295 eV Core-core repulsion = 19318.191796 eV Total energy + Delta-G solvation = -3673.592499 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.100 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.07116 -40.46688 -40.18167 -36.81767 -36.10855 -33.58582 -33.35428 -32.99269 -32.27288 -31.02809 -27.18686 -26.66470 -24.74860 -24.59994 -24.32329 -21.58211 -21.31377 -20.13233 -19.34884 -18.20830 -17.83557 -17.80336 -16.98437 -16.87170 -16.54636 -16.31631 -16.14333 -15.87431 -15.48200 -15.17748 -14.99447 -14.59372 -14.09053 -13.92113 -13.83629 -13.54505 -13.48563 -12.91927 -12.82986 -12.69594 -12.47364 -12.44761 -12.40820 -12.11565 -12.07529 -11.85994 -11.57943 -11.52492 -11.36815 -10.75182 -10.66156 -10.12440 -9.11916 -8.52155 -6.02491 -0.46452 -0.31253 0.66515 0.91427 0.98128 1.36137 1.44513 1.56884 1.86179 2.27513 2.86313 2.90697 2.98837 3.14453 3.35667 3.46703 3.62810 3.77958 3.95735 4.04058 4.04861 4.12181 4.15535 4.15831 4.36905 4.44061 4.51329 4.57096 4.74443 4.87481 4.88018 4.95182 5.11623 5.38116 5.88199 6.15307 6.43817 7.01434 7.19153 7.39677 7.90032 8.64530 Molecular weight = 313.10amu Principal moments of inertia in cm(-1) A = 0.025434 B = 0.002771 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.624347 B =10101.517712 C =10868.541218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.268 1.268 7 C -0.336 4.336 8 H 0.089 0.911 9 N -0.553 5.553 10 C 0.453 3.547 11 O -0.616 6.616 12 C -0.130 4.130 13 S 0.137 5.863 14 C 0.198 3.802 15 N -0.357 5.357 16 N -0.058 5.058 17 N -0.088 5.088 18 N -0.348 5.348 19 C 0.139 3.861 20 C -0.160 4.160 21 C 0.067 3.933 22 O -0.395 6.395 23 C 0.067 3.933 24 C -0.160 4.160 25 H 0.280 0.720 26 H 0.400 0.600 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.120 0.880 36 H 0.077 0.923 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.914 -19.674 0.001 21.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.193 1.193 7 C -0.466 4.466 8 H 0.107 0.893 9 N -0.189 5.189 10 C 0.239 3.761 11 O -0.505 6.505 12 C -0.282 4.282 13 S 0.361 5.639 14 C -0.186 4.186 15 N -0.214 5.214 16 N -0.054 5.054 17 N -0.075 5.075 18 N -0.147 5.147 19 C 0.038 3.962 20 C -0.199 4.199 21 C -0.010 4.010 22 O -0.314 6.314 23 C -0.010 4.010 24 C -0.198 4.198 25 H 0.090 0.910 26 H 0.234 0.766 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.137 0.863 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.137 0.863 36 H 0.095 0.905 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.445 -20.273 0.006 21.961 hybrid contribution -1.301 1.387 -0.009 1.902 sum 7.144 -18.886 -0.003 20.192 Atomic orbital electron populations 1.69681 1.07046 1.29719 1.49029 1.26127 0.96497 1.02683 0.95658 0.84878 0.78001 0.76471 0.78750 1.19544 1.19772 1.19262 1.19762 0.93052 0.83302 1.50435 0.89294 1.41803 1.09665 1.04381 1.63012 1.19476 0.87608 0.84740 0.84322 1.90539 1.14700 1.87236 1.57977 1.23649 1.01450 0.93216 1.09927 1.86256 0.99944 0.87617 1.90058 1.28512 0.97243 0.92641 1.00215 1.74909 1.04365 1.16897 1.25248 1.77830 1.22676 0.94211 1.10655 1.82294 0.85440 1.17808 1.21965 1.51954 1.09193 1.02556 1.51034 1.22239 0.76155 0.98349 0.99437 1.22612 1.01358 0.99783 0.96144 1.22721 0.93447 0.96305 0.88573 1.87970 1.92977 1.36032 1.14427 1.22721 0.93418 0.96686 0.88218 1.22606 1.01379 0.99563 0.96298 0.91019 0.76574 0.85269 0.85270 0.85238 0.90471 0.89264 0.86258 0.90525 0.90526 0.86251 0.90461 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.55 13.05 21.66 0.28 -47.26 16 2 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 3 Si 1.00 40.64 29.55 68.60 2.03 42.67 16 4 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 6 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 7 C -0.34 -17.93 9.68 84.04 0.81 -17.11 16 8 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 9 N -0.55 -26.73 5.29 -306.98 -1.62 -28.35 16 10 C 0.45 19.83 7.80 87.66 0.68 20.52 16 11 O -0.62 -30.62 15.44 -3.07 -0.05 -30.67 16 12 C -0.13 -4.28 5.72 71.24 0.41 -3.87 16 13 S 0.14 3.86 20.58 -56.49 -1.16 2.69 16 14 C 0.20 5.58 8.15 179.84 1.47 7.05 16 15 N -0.36 -11.67 11.57 -57.41 -0.66 -12.33 16 16 N -0.06 -1.93 13.38 37.02 0.50 -1.43 16 17 N -0.09 -2.55 13.85 37.02 0.51 -2.04 16 18 N -0.35 -8.53 3.34 -326.73 -1.09 -9.62 16 19 C 0.14 2.33 3.11 45.11 0.14 2.47 16 20 C -0.16 -2.27 5.72 30.68 0.18 -2.10 16 21 C 0.07 0.70 6.84 72.01 0.49 1.19 16 22 O -0.40 -5.55 10.77 -148.98 -1.60 -7.15 16 23 C 0.07 0.69 6.84 72.01 0.49 1.19 16 24 C -0.16 -2.26 5.71 30.69 0.18 -2.09 16 25 H 0.28 13.65 8.31 -92.70 -0.77 12.88 16 26 H 0.40 18.56 7.90 -92.71 -0.73 17.83 16 27 H 0.13 3.92 8.14 -2.40 -0.02 3.90 16 28 H 0.13 3.92 8.14 -2.39 -0.02 3.90 16 29 H 0.13 1.84 7.33 -2.39 -0.02 1.83 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 0.57 8.14 -2.39 -0.02 0.56 16 34 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -65.99 335.31 2.83 -63.16 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.39 Total: 23.06 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 5.31 Total: 7.27 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -2.09 Total: -101.04 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -1.65 Total: -37.82 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Atomic # 16 Polarization: 3.86 SS G_CDS: -1.16 Total: 2.69 kcal Total: -65.99 2.83 -63.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116015672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.027 kcal (2) G-P(sol) polarization free energy of solvation -65.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds