Wall clock time and date at job start Fri Apr 10 2020 18:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99611 * 2 1 4 4 H 1.48501 * 109.46948 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47378 * 300.00515 * 3 2 1 6 6 H 1.48501 * 109.47174 * 60.00430 * 3 2 1 7 7 C 1.38948 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00263 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99682 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7 13 13 O 1.45206 * 109.47021 * 180.02562 * 12 10 9 14 14 C 1.34224 * 117.00077 * 180.02562 * 13 12 10 15 15 O 1.20833 * 120.00103 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00302 * 180.02562 * 14 13 12 17 17 C 1.53002 * 109.46941 * 299.99657 * 16 14 13 18 18 C 1.52997 * 109.47493 * 179.97438 * 17 16 14 19 19 C 1.53006 * 109.46769 * 59.99990 * 18 17 16 20 20 N 1.46502 * 109.46836 * 180.02562 * 19 18 17 21 21 C 1.34776 * 120.00326 * 275.00009 * 20 19 18 22 22 N 1.34773 * 120.00413 * 179.97438 * 21 20 19 23 23 O 1.21592 * 119.99807 * 0.02562 * 21 20 19 24 24 C 1.52998 * 109.47286 * 299.99910 * 19 18 17 25 25 C 1.52997 * 109.46630 * 60.00179 * 24 19 18 26 26 H 0.97002 * 120.00294 * 359.97438 * 1 2 3 27 27 H 0.96996 * 120.00211 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 29 29 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 30 30 H 1.08995 * 109.47473 * 59.99636 * 16 14 13 31 31 H 1.09003 * 109.47318 * 300.00255 * 17 16 14 32 32 H 1.09008 * 109.46908 * 59.99812 * 17 16 14 33 33 H 1.09003 * 109.47116 * 300.00464 * 18 17 16 34 34 H 1.09001 * 109.47677 * 179.97438 * 18 17 16 35 35 H 1.09000 * 109.47144 * 60.00813 * 19 18 17 36 36 H 0.96999 * 119.99948 * 94.99748 * 20 19 18 37 37 H 0.97000 * 119.99851 * 0.02562 * 22 21 20 38 38 H 0.96997 * 120.00577 * 179.97438 * 22 21 20 39 39 H 1.09000 * 109.46861 * 300.00418 * 24 19 18 40 40 H 1.08995 * 109.47244 * 179.97438 * 24 19 18 41 41 H 1.09005 * 109.47056 * 179.97438 * 25 24 19 42 42 H 1.09000 * 109.47303 * 60.00510 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8891 2.3966 -1.2124 6 1 1.8893 2.3965 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2104 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 8 2.1876 -5.9665 -0.0027 14 6 1.6747 -7.2069 -0.0037 15 8 0.4768 -7.3653 -0.0038 16 6 2.5927 -8.4019 -0.0037 17 6 3.4762 -8.3663 -1.2524 18 6 4.4088 -9.5792 -1.2522 19 6 3.5759 -10.8628 -1.2531 20 7 4.4688 -12.0242 -1.2523 21 6 4.9615 -12.4964 -2.4146 22 7 5.7833 -13.5645 -2.4138 23 8 4.6652 -11.9581 -3.4638 24 6 2.6925 -10.8985 -0.0045 25 6 1.7600 -9.6855 -0.0048 26 1 -0.4851 0.8400 0.0004 27 1 0.3535 -2.3906 -0.0005 28 1 0.6170 -4.9201 -0.8920 29 1 0.6177 -4.9213 0.8880 30 1 3.2209 -8.3776 0.8866 31 1 2.8480 -8.3907 -2.1428 32 1 4.0699 -7.4520 -1.2514 33 1 5.0369 -9.5544 -0.3617 34 1 5.0379 -9.5541 -2.1419 35 1 2.9478 -10.8876 -2.1436 36 1 4.7056 -12.4534 -0.4153 37 1 6.0200 -13.9937 -1.5767 38 1 6.1376 -13.9046 -3.2503 39 1 3.3207 -10.8736 0.8859 40 1 2.0988 -11.8126 -0.0055 41 1 1.1302 -9.7111 0.8845 42 1 1.1318 -9.7103 -0.8952 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116016321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:28 Heat of formation + Delta-G solvation = -174.890540 kcal Electronic energy + Delta-G solvation = -25544.793862 eV Core-core repulsion = 21524.064013 eV Total energy + Delta-G solvation = -4020.729849 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.77153 -40.15127 -38.46759 -37.85339 -36.06646 -34.50155 -33.98754 -33.76815 -31.37474 -31.10473 -30.02562 -28.20851 -24.83657 -23.84744 -23.02447 -21.53470 -20.87787 -20.01631 -19.55798 -18.50885 -18.05401 -17.70137 -17.50394 -16.45442 -16.33523 -15.69465 -15.48216 -15.37812 -14.88210 -14.56785 -14.40699 -14.33035 -13.98671 -13.73497 -13.41594 -12.99975 -12.80401 -12.48384 -12.24479 -12.08220 -11.67903 -11.61128 -11.55657 -11.43562 -11.14323 -10.80270 -10.61118 -10.56091 -10.38217 -10.37163 -10.31130 -10.16654 -10.04300 -9.60540 -9.30262 -8.50401 -8.07130 -6.48987 -3.90921 2.33823 2.53477 2.76312 2.91060 3.12579 3.24598 3.32227 3.75275 4.08027 4.13316 4.34598 4.36944 4.54863 4.75482 4.85906 4.91314 5.07343 5.12662 5.16215 5.17638 5.19388 5.42291 5.48220 5.61634 5.69676 5.71499 5.75061 5.87595 5.97008 6.05592 6.08660 6.09179 6.22493 6.38473 6.55840 6.68275 7.48983 7.61074 7.87664 7.98827 8.30750 8.49890 9.08368 9.40799 9.90747 10.68330 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.030328 B = 0.002155 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.026304 B =12988.049598 C =13592.285244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.301 4.301 8 H 0.107 0.893 9 N -0.554 5.554 10 C 0.439 3.561 11 O -0.576 6.576 12 C 0.060 3.940 13 O -0.324 6.324 14 C 0.461 3.539 15 O -0.515 6.515 16 C -0.078 4.078 17 C -0.111 4.111 18 C -0.126 4.126 19 C 0.158 3.842 20 N -0.741 5.741 21 C 0.704 3.296 22 N -0.870 5.870 23 O -0.591 6.591 24 C -0.123 4.123 25 C -0.100 4.100 26 H 0.273 0.727 27 H 0.395 0.605 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.395 0.605 37 H 0.396 0.604 38 H 0.414 0.586 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.373 -26.523 1.183 27.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.191 5.191 10 C 0.224 3.776 11 O -0.460 6.460 12 C -0.018 4.018 13 O -0.238 6.238 14 C 0.304 3.696 15 O -0.404 6.404 16 C -0.098 4.098 17 C -0.149 4.149 18 C -0.165 4.165 19 C 0.054 3.946 20 N -0.396 5.396 21 C 0.402 3.598 22 N -0.438 5.438 23 O -0.469 6.469 24 C -0.161 4.161 25 C -0.138 4.138 26 H 0.083 0.917 27 H 0.228 0.772 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.128 0.872 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.229 0.771 37 H 0.223 0.777 38 H 0.246 0.754 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.339 -25.785 0.363 26.555 hybrid contribution -0.061 0.344 0.536 0.640 sum 6.278 -25.441 0.899 26.219 Atomic orbital electron populations 1.69621 1.05997 1.28358 1.49813 1.25316 0.95694 0.99877 0.96955 0.85741 0.79710 0.80761 0.77785 1.19091 1.20632 1.20642 1.19776 0.93502 0.81758 1.48015 0.87564 1.41717 1.09370 1.04118 1.63897 1.19340 0.88342 0.84098 0.85866 1.90561 1.13411 1.86811 1.55187 1.22742 0.90912 0.84715 1.03426 1.86552 1.40290 1.14228 1.82746 1.23733 0.88590 0.84957 0.72334 1.90647 1.16947 1.86876 1.45881 1.21099 0.96416 0.89967 1.02282 1.21515 0.97788 0.99536 0.96065 1.21934 0.98207 0.93254 1.03130 1.20966 0.90320 0.83727 0.99635 1.45200 1.52656 1.34225 1.07518 1.16016 0.79053 0.80410 0.84360 1.43016 1.53717 1.34062 1.13011 1.90999 1.63965 1.61293 1.30643 1.21805 0.98033 0.98891 0.97408 1.21378 0.97065 0.90961 1.04373 0.91695 0.77173 0.89590 0.89629 0.87176 0.90949 0.89348 0.91350 0.90656 0.89036 0.77129 0.77687 0.75419 0.91002 0.90678 0.90245 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.20 13.05 55.50 0.72 -23.48 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 8 H 0.11 3.08 7.16 -52.48 -0.38 2.71 16 9 N -0.55 -14.11 5.29 -10.96 -0.06 -14.16 16 10 C 0.44 10.66 7.86 -10.99 -0.09 10.57 16 11 O -0.58 -16.06 16.08 -14.12 -0.23 -16.29 16 12 C 0.06 1.15 5.94 36.01 0.21 1.36 16 13 O -0.32 -5.99 9.66 -45.89 -0.44 -6.44 16 14 C 0.46 7.09 7.26 36.00 0.26 7.35 16 15 O -0.51 -8.82 15.73 -18.76 -0.30 -9.11 16 16 C -0.08 -0.85 2.63 -91.77 -0.24 -1.09 16 17 C -0.11 -1.19 5.13 -26.73 -0.14 -1.33 16 18 C -0.13 -1.14 5.49 -26.73 -0.15 -1.29 16 19 C 0.16 1.27 2.45 -67.93 -0.17 1.11 16 20 N -0.74 -4.79 5.08 -58.67 -0.30 -5.09 16 21 C 0.70 6.31 8.80 -86.92 -0.77 5.55 16 22 N -0.87 -3.98 8.88 27.63 0.25 -3.74 16 23 O -0.59 -8.37 16.84 5.28 0.09 -8.28 16 24 C -0.12 -0.77 5.39 -26.73 -0.14 -0.92 16 25 C -0.10 -0.88 4.49 -26.73 -0.12 -1.00 16 26 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 27 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 28 H 0.09 1.52 8.13 -51.93 -0.42 1.10 16 29 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 30 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.09 1.08 8.11 -51.92 -0.42 0.66 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.95 7.58 -51.93 -0.39 0.55 16 36 H 0.40 1.29 8.62 -40.82 -0.35 0.94 16 37 H 0.40 0.50 8.84 -40.82 -0.36 0.14 16 38 H 0.41 1.67 8.93 -40.82 -0.36 1.30 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 42 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 358.89 15.07 5.41 5.41 Total: -1.00 -36.37 358.89 -7.40 -43.77 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -5.95 Total: 9.30 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: -1.57 Total: 12.33 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.61 Total: -46.47 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -0.88 Total: -40.12 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.37 -7.40 -43.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116016321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.125 kcal (2) G-P(sol) polarization free energy of solvation -36.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds