Wall clock time and date at job start Fri Apr 10 2020 18:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99611 * 2 1 4 4 H 1.48501 * 109.46948 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47378 * 300.00515 * 3 2 1 6 6 H 1.48501 * 109.47174 * 60.00430 * 3 2 1 7 7 C 1.38948 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00263 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99682 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7 13 13 O 1.45206 * 109.47021 * 180.02562 * 12 10 9 14 14 C 1.34224 * 117.00077 * 180.02562 * 13 12 10 15 15 O 1.20833 * 120.00103 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00302 * 180.02562 * 14 13 12 17 17 C 1.53002 * 109.46941 * 299.99657 * 16 14 13 18 18 C 1.52997 * 109.47493 * 179.97438 * 17 16 14 19 19 C 1.53006 * 109.46769 * 59.99990 * 18 17 16 20 20 N 1.46502 * 109.46836 * 180.02562 * 19 18 17 21 21 C 1.34776 * 120.00326 * 275.00009 * 20 19 18 22 22 N 1.34773 * 120.00413 * 179.97438 * 21 20 19 23 23 O 1.21592 * 119.99807 * 0.02562 * 21 20 19 24 24 C 1.52998 * 109.47286 * 299.99910 * 19 18 17 25 25 C 1.52997 * 109.46630 * 60.00179 * 24 19 18 26 26 H 0.97002 * 120.00294 * 359.97438 * 1 2 3 27 27 H 0.96996 * 120.00211 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 29 29 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 30 30 H 1.08995 * 109.47473 * 59.99636 * 16 14 13 31 31 H 1.09003 * 109.47318 * 300.00255 * 17 16 14 32 32 H 1.09008 * 109.46908 * 59.99812 * 17 16 14 33 33 H 1.09003 * 109.47116 * 300.00464 * 18 17 16 34 34 H 1.09001 * 109.47677 * 179.97438 * 18 17 16 35 35 H 1.09000 * 109.47144 * 60.00813 * 19 18 17 36 36 H 0.96999 * 119.99948 * 94.99748 * 20 19 18 37 37 H 0.97000 * 119.99851 * 0.02562 * 22 21 20 38 38 H 0.96997 * 120.00577 * 179.97438 * 22 21 20 39 39 H 1.09000 * 109.46861 * 300.00418 * 24 19 18 40 40 H 1.08995 * 109.47244 * 179.97438 * 24 19 18 41 41 H 1.09005 * 109.47056 * 179.97438 * 25 24 19 42 42 H 1.09000 * 109.47303 * 60.00510 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8891 2.3966 -1.2124 6 1 1.8893 2.3965 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2104 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 8 2.1876 -5.9665 -0.0027 14 6 1.6747 -7.2069 -0.0037 15 8 0.4768 -7.3653 -0.0038 16 6 2.5927 -8.4019 -0.0037 17 6 3.4762 -8.3663 -1.2524 18 6 4.4088 -9.5792 -1.2522 19 6 3.5759 -10.8628 -1.2531 20 7 4.4688 -12.0242 -1.2523 21 6 4.9615 -12.4964 -2.4146 22 7 5.7833 -13.5645 -2.4138 23 8 4.6652 -11.9581 -3.4638 24 6 2.6925 -10.8985 -0.0045 25 6 1.7600 -9.6855 -0.0048 26 1 -0.4851 0.8400 0.0004 27 1 0.3535 -2.3906 -0.0005 28 1 0.6170 -4.9201 -0.8920 29 1 0.6177 -4.9213 0.8880 30 1 3.2209 -8.3776 0.8866 31 1 2.8480 -8.3907 -2.1428 32 1 4.0699 -7.4520 -1.2514 33 1 5.0369 -9.5544 -0.3617 34 1 5.0379 -9.5541 -2.1419 35 1 2.9478 -10.8876 -2.1436 36 1 4.7056 -12.4534 -0.4153 37 1 6.0200 -13.9937 -1.5767 38 1 6.1376 -13.9046 -3.2503 39 1 3.3207 -10.8736 0.8859 40 1 2.0988 -11.8126 -0.0055 41 1 1.1302 -9.7111 0.8845 42 1 1.1318 -9.7103 -0.8952 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116016321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:27 Heat of formation + Delta-G solvation = -203.422132 kcal Electronic energy + Delta-G solvation = -25546.031084 eV Core-core repulsion = 21524.064013 eV Total energy + Delta-G solvation = -4021.967072 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.90537 -40.99685 -40.11939 -38.96740 -37.46775 -36.04177 -35.28699 -34.36630 -33.42668 -31.83310 -30.94765 -29.71908 -26.68430 -24.89654 -23.76401 -22.40749 -21.66951 -21.43536 -20.92171 -20.08381 -19.11801 -18.78674 -18.28289 -17.91561 -17.68552 -17.27730 -16.54100 -16.25025 -16.15314 -15.81495 -15.79015 -15.42721 -15.10741 -14.86593 -14.74522 -14.21693 -13.81999 -13.75621 -13.57349 -13.40260 -13.23309 -12.94950 -12.61411 -12.47637 -12.34119 -12.13990 -12.11442 -11.85904 -11.59468 -11.54218 -11.49946 -11.40324 -11.21476 -10.65823 -10.51766 -10.12828 -9.90394 -8.53432 -6.04120 1.10299 1.33974 1.37857 1.46089 1.59134 1.85747 1.99432 2.22890 2.29417 3.02984 3.11957 3.52163 3.60857 3.66885 3.75280 3.98249 4.00546 4.14856 4.15817 4.21307 4.27857 4.37138 4.38502 4.48114 4.69462 4.83790 4.99174 5.11043 5.13646 5.16117 5.31512 5.35127 5.36343 5.39257 5.61198 5.88179 5.97434 6.09355 6.44762 6.65362 7.01948 7.18857 7.38758 7.72716 7.92241 8.63825 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.030328 B = 0.002155 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.026304 B =12988.049598 C =13592.285244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 0.999 3.001 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.338 4.338 8 H 0.084 0.916 9 N -0.559 5.559 10 C 0.436 3.564 11 O -0.617 6.617 12 C 0.070 3.930 13 O -0.343 6.343 14 C 0.459 3.541 15 O -0.532 6.532 16 C -0.071 4.071 17 C -0.108 4.108 18 C -0.118 4.118 19 C 0.161 3.839 20 N -0.725 5.725 21 C 0.695 3.305 22 N -0.849 5.849 23 O -0.650 6.650 24 C -0.109 4.109 25 C -0.096 4.096 26 H 0.281 0.719 27 H 0.400 0.600 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.135 0.865 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.415 0.585 37 H 0.415 0.585 38 H 0.418 0.582 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.675 -27.948 2.645 28.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.211 4.211 3 Si 0.822 3.178 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.102 0.898 9 N -0.196 5.196 10 C 0.223 3.777 11 O -0.504 6.504 12 C -0.007 4.007 13 O -0.258 6.258 14 C 0.304 3.696 15 O -0.422 6.422 16 C -0.090 4.090 17 C -0.146 4.146 18 C -0.156 4.156 19 C 0.055 3.945 20 N -0.381 5.381 21 C 0.393 3.607 22 N -0.418 5.418 23 O -0.532 6.532 24 C -0.147 4.147 25 C -0.134 4.134 26 H 0.090 0.910 27 H 0.234 0.766 28 H 0.120 0.880 29 H 0.124 0.876 30 H 0.153 0.847 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.252 0.748 37 H 0.246 0.754 38 H 0.251 0.749 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.632 -27.275 1.880 28.132 hybrid contribution -0.164 0.726 0.067 0.747 sum 6.469 -26.549 1.948 27.395 Atomic orbital electron populations 1.69677 1.06956 1.29676 1.49237 1.26146 0.96611 1.02639 0.95679 0.84784 0.78055 0.76516 0.78445 1.19556 1.19507 1.19352 1.19761 0.92938 0.83377 1.50575 0.89770 1.41757 1.09550 1.04229 1.64066 1.20126 0.88095 0.85405 0.84060 1.90524 1.15428 1.87711 1.56714 1.22497 0.90297 0.82800 1.05149 1.86570 1.40704 1.15179 1.83348 1.24662 0.89150 0.84655 0.71165 1.90634 1.17963 1.86834 1.46741 1.21293 0.96075 0.88590 1.03009 1.21443 0.97713 0.99714 0.95724 1.21845 0.97797 0.92955 1.03049 1.20813 0.90270 0.83729 0.99647 1.44938 1.51826 1.33543 1.07796 1.16307 0.79365 0.80953 0.84050 1.42809 1.52095 1.32578 1.14342 1.90966 1.66102 1.63274 1.32854 1.21726 0.97620 0.98129 0.97219 1.21386 0.97255 0.90852 1.03939 0.90960 0.76594 0.87982 0.87561 0.84707 0.92307 0.91182 0.89251 0.92825 0.91842 0.74753 0.75423 0.74932 0.88228 0.88969 0.89644 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.97 13.05 21.66 0.28 -48.69 16 2 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 3 Si 1.00 42.37 29.55 68.60 2.03 44.40 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 6 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.34 -19.13 9.68 84.04 0.81 -18.32 16 8 H 0.08 5.07 7.16 -2.91 -0.02 5.05 16 9 N -0.56 -29.03 5.29 -306.98 -1.62 -30.66 16 10 C 0.44 21.64 7.86 87.66 0.69 22.33 16 11 O -0.62 -35.48 16.08 15.72 0.25 -35.22 16 12 C 0.07 2.68 5.94 71.24 0.42 3.11 16 13 O -0.34 -12.68 9.66 -45.00 -0.43 -13.12 16 14 C 0.46 13.84 7.26 71.23 0.52 14.36 16 15 O -0.53 -17.83 15.73 21.94 0.35 -17.48 16 16 C -0.07 -1.44 2.63 -11.54 -0.03 -1.47 16 17 C -0.11 -2.33 5.13 30.59 0.16 -2.17 16 18 C -0.12 -2.03 5.49 30.60 0.17 -1.87 16 19 C 0.16 2.36 2.45 44.99 0.11 2.47 16 20 N -0.72 -7.82 5.08 -457.80 -2.33 -10.14 16 21 C 0.70 11.75 8.80 179.06 1.58 13.33 16 22 N -0.85 -6.19 8.88 -184.75 -1.64 -7.83 16 23 O -0.65 -18.77 16.84 -4.01 -0.07 -18.84 16 24 C -0.11 -1.02 5.39 30.59 0.16 -0.86 16 25 C -0.10 -1.52 4.49 30.59 0.14 -1.38 16 26 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 27 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 28 H 0.10 3.58 8.13 -2.39 -0.02 3.56 16 29 H 0.11 3.64 8.13 -2.39 -0.02 3.62 16 30 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.77 8.11 -2.38 -0.02 1.75 16 33 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.33 7.58 -2.39 -0.02 1.31 16 36 H 0.42 1.20 8.62 -92.71 -0.80 0.40 16 37 H 0.41 -0.14 8.84 -92.71 -0.82 -0.96 16 38 H 0.42 2.77 8.93 -92.71 -0.83 1.94 16 39 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.08 1.30 8.10 -2.38 -0.02 1.28 16 42 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 Total: -1.00 -81.29 358.89 -0.07 -81.36 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: -2.08 Total: 26.77 kcal Atomic # 6 Polarization: 24.26 SS G_CDS: 5.19 Total: 29.46 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -5.31 Total: -97.32 kcal Atomic # 8 Polarization: -84.76 SS G_CDS: 0.10 Total: -84.66 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -81.29 -0.07 -81.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116016321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.060 kcal (2) G-P(sol) polarization free energy of solvation -81.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds