Wall clock time and date at job start Fri Apr 10 2020 18:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46958 * 251.96997 * 3 2 1 5 5 C 1.36485 * 119.99777 * 181.89844 * 4 3 2 6 6 H 1.07998 * 120.00045 * 171.59967 * 5 4 3 7 7 C 1.39295 * 120.00070 * 351.87516 * 5 4 3 8 8 N 1.31199 * 120.00083 * 6.07713 * 7 5 4 9 9 Si 1.86797 * 119.99798 * 186.08301 * 7 5 4 10 10 H 1.48494 * 109.47460 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47505 * 119.99866 * 9 7 5 12 12 H 1.48508 * 109.47102 * 239.99372 * 9 7 5 13 13 C 1.34777 * 119.99905 * 1.89318 * 4 3 2 14 14 O 1.21657 * 120.00250 * 297.14567 * 13 4 3 15 15 C 1.47388 * 119.99695 * 117.15003 * 13 4 3 16 16 C 1.38197 * 120.64683 * 173.77166 * 15 13 4 17 17 C 1.39863 * 119.02263 * 179.97438 * 16 15 13 18 18 N 1.31419 * 120.27646 * 359.97438 * 17 16 15 19 19 C 1.33262 * 121.37627 * 0.02562 * 18 17 16 20 20 C 1.40883 * 132.35337 * 179.97438 * 19 18 17 21 21 C 1.46754 * 126.50795 * 0.02796 * 20 19 18 22 22 N 1.34776 * 119.99967 * 180.02562 * 21 20 19 23 23 O 1.21692 * 119.99969 * 359.97438 * 21 20 19 24 24 C 1.40444 * 106.98027 * 180.02562 * 20 19 18 25 25 N 1.30845 * 108.74800 * 0.02562 * 24 20 19 26 26 N 1.36633 * 120.98391 * 359.71697 * 19 18 17 27 27 H 4.40647 * 5.51380 * 180.02562 * 4 1 2 28 28 H 1.09002 * 109.46864 * 131.96942 * 3 2 1 29 29 H 1.08998 * 109.47225 * 11.96860 * 3 2 1 30 30 H 0.97003 * 120.00165 * 180.02562 * 8 7 5 31 31 H 1.08002 * 120.49296 * 359.97438 * 16 15 13 32 32 H 1.08006 * 119.86306 * 179.97438 * 17 16 15 33 33 H 0.96999 * 119.99678 * 359.97438 * 22 21 20 34 34 H 0.96998 * 119.99926 * 179.97438 * 22 21 20 35 35 H 1.08007 * 125.62323 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1342 0.4284 1.3134 5 6 4.4754 0.5435 1.5386 6 1 4.8327 0.9862 2.4566 7 6 5.3832 0.0951 0.5820 8 7 4.9533 -0.3273 -0.5833 9 14 7.2129 0.0952 0.9585 10 1 7.4359 0.6162 2.3311 11 1 7.7380 -1.2906 0.8632 12 1 7.9195 0.9606 -0.0199 13 6 2.2588 0.7083 2.2992 14 8 1.4689 1.6244 2.1693 15 6 2.2585 -0.0954 3.5347 16 6 1.4575 0.2570 4.6042 17 6 1.4835 -0.5302 5.7599 18 7 2.2596 -1.5889 5.8231 19 6 3.0374 -1.9411 4.7999 20 6 3.9412 -3.0062 4.6174 21 6 4.2593 -4.0578 5.5904 22 7 5.1501 -5.0192 5.2765 23 8 3.7193 -4.0612 6.6810 24 6 4.4801 -2.8705 3.3276 25 7 3.9558 -1.8136 2.7619 26 7 3.0504 -1.2138 3.6433 27 1 -1.0501 -0.0002 -0.0001 28 1 3.0090 0.6881 -0.7641 29 1 3.0099 -1.0045 -0.2131 30 1 5.5855 -0.6399 -1.2493 31 1 0.8206 1.1276 4.5485 32 1 0.8633 -0.2670 6.6040 33 1 5.5808 -5.0163 4.4074 34 1 5.3606 -5.7141 5.9198 35 1 5.2078 -3.5295 2.8773 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116915435.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:31 Heat of formation + Delta-G solvation = 122.958716 kcal Electronic energy + Delta-G solvation = -25985.861906 eV Core-core repulsion = 22181.816346 eV Total energy + Delta-G solvation = -3804.045560 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.096 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.28847 -40.71641 -39.88375 -38.77847 -37.20880 -34.91543 -34.44523 -34.34950 -33.17428 -31.97313 -30.24851 -28.78231 -27.39972 -25.73111 -24.92265 -23.55478 -22.41484 -20.96233 -19.88543 -19.68982 -18.65410 -18.39088 -17.97758 -17.56291 -17.12911 -17.06332 -16.69354 -16.31899 -16.02064 -15.77598 -15.29331 -14.97695 -14.75035 -14.53735 -14.29953 -14.08671 -13.86878 -13.57414 -13.29522 -12.96548 -12.77814 -12.35489 -12.19660 -11.95776 -11.64166 -11.57757 -11.14283 -10.90558 -10.74263 -10.60180 -10.54723 -10.52835 -9.87389 -8.95799 -8.47970 -5.66603 -1.02361 -0.21013 1.00601 1.14254 1.34743 1.43986 1.53177 1.55944 1.69510 1.93879 2.22360 2.31343 2.62568 2.71038 2.77315 2.98193 3.05967 3.31547 3.51967 3.77723 3.97588 4.03282 4.12623 4.35235 4.61489 4.67750 4.93581 5.03671 5.06656 5.18035 5.21437 5.31309 5.52249 5.62651 6.07249 6.34766 6.46328 6.61080 6.70319 6.70769 6.90355 7.27728 7.48494 7.54451 8.49088 Molecular weight = 313.10amu Principal moments of inertia in cm(-1) A = 0.011333 B = 0.006963 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.023498 B = 4020.458175 C = 5550.489056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.241 4.241 3 C 0.272 3.728 4 N -0.460 5.460 5 C -0.242 4.242 6 H 0.082 0.918 7 C 0.016 3.984 8 N -0.853 5.853 9 Si 0.982 3.018 10 H -0.276 1.276 11 H -0.256 1.256 12 H -0.274 1.274 13 C 0.481 3.519 14 O -0.567 6.567 15 C 0.128 3.872 16 C -0.187 4.187 17 C 0.190 3.810 18 N -0.491 5.491 19 C 0.298 3.702 20 C -0.329 4.329 21 C 0.604 3.396 22 N -0.831 5.831 23 O -0.590 6.590 24 C 0.112 3.888 25 N -0.277 5.277 26 N -0.295 5.295 27 H 0.251 0.749 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.286 0.714 31 H 0.187 0.813 32 H 0.230 0.770 33 H 0.414 0.586 34 H 0.412 0.588 35 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.852 -5.859 3.549 6.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.242 4.242 3 C 0.151 3.849 4 N -0.179 5.179 5 C -0.371 4.371 6 H 0.100 0.900 7 C -0.191 4.191 8 N -0.490 5.490 9 Si 0.805 3.195 10 H -0.201 1.201 11 H -0.180 1.180 12 H -0.200 1.200 13 C 0.275 3.725 14 O -0.450 6.450 15 C 0.008 3.992 16 C -0.213 4.213 17 C 0.014 3.986 18 N -0.205 5.205 19 C 0.064 3.936 20 C -0.347 4.347 21 C 0.391 3.609 22 N -0.395 5.395 23 O -0.471 6.471 24 C -0.071 4.071 25 N -0.097 5.097 26 N -0.067 5.067 27 H 0.267 0.733 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.204 0.796 32 H 0.247 0.753 33 H 0.245 0.755 34 H 0.245 0.755 35 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 0.305 -5.271 3.388 6.274 hybrid contribution 0.936 -0.173 -0.240 0.982 sum 1.241 -5.444 3.148 6.410 Atomic orbital electron populations 1.25597 0.96549 1.00776 0.97774 1.24459 0.96323 1.00888 1.02515 1.18504 0.80126 1.01373 0.84902 1.43155 1.05438 1.60845 1.08467 1.19717 0.80092 1.32971 1.04284 0.90020 1.25971 1.04112 0.94507 0.94510 1.69965 1.37266 1.36836 1.04963 0.85032 0.76840 0.79364 0.78264 1.20125 1.18009 1.19957 1.17247 0.84281 0.88052 0.82918 1.90631 1.46665 1.27841 1.79892 1.21944 0.92009 0.88073 0.97186 1.22549 1.02592 1.04739 0.91390 1.24164 0.91284 0.85747 0.97455 1.68074 1.08417 1.18523 1.25497 1.20885 0.96238 0.93294 0.83158 1.19371 1.12102 1.03749 0.99441 1.16862 0.78539 0.80722 0.84765 1.43263 1.44908 1.29437 1.21932 1.90801 1.54408 1.76971 1.24929 1.24811 0.96980 0.94228 0.91131 1.78326 1.06782 1.11137 1.13426 1.47128 1.27884 1.18785 1.12902 0.73278 0.90595 0.88151 0.90283 0.79551 0.75340 0.75502 0.75530 0.74813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.05 19.12 74.32 1.42 -5.63 16 2 C -0.24 -10.61 11.17 31.13 0.35 -10.27 16 3 C 0.27 12.74 4.95 84.58 0.42 13.16 16 4 N -0.46 -22.31 2.35 -649.26 -1.52 -23.84 16 5 C -0.24 -11.56 7.14 84.22 0.60 -10.96 16 6 H 0.08 4.05 7.84 -2.91 -0.02 4.03 16 7 C 0.02 0.70 5.46 85.04 0.46 1.16 16 8 N -0.85 -37.97 9.46 21.72 0.21 -37.77 16 9 Si 0.98 35.55 29.56 68.60 2.03 37.58 16 10 H -0.28 -10.37 7.11 99.48 0.71 -9.67 16 11 H -0.26 -8.57 7.11 99.48 0.71 -7.86 16 12 H -0.27 -9.78 7.11 99.48 0.71 -9.08 16 13 C 0.48 22.95 5.39 86.65 0.47 23.42 16 14 O -0.57 -28.49 16.00 -4.21 -0.07 -28.56 16 15 C 0.13 5.42 6.67 40.66 0.27 5.69 16 16 C -0.19 -6.23 9.67 22.65 0.22 -6.01 16 17 C 0.19 5.59 11.27 85.15 0.96 6.55 16 18 N -0.49 -18.63 10.21 -191.99 -1.96 -20.59 16 19 C 0.30 12.14 7.75 134.03 1.04 13.18 16 20 C -0.33 -11.88 6.17 -19.87 -0.12 -12.00 16 21 C 0.60 20.05 8.06 86.47 0.70 20.75 16 22 N -0.83 -16.97 8.86 -176.33 -1.56 -18.53 16 23 O -0.59 -24.54 17.57 -4.32 -0.08 -24.62 16 24 C 0.11 3.65 11.44 85.38 0.98 4.63 16 25 N -0.28 -11.41 9.51 -56.63 -0.54 -11.95 16 26 N -0.30 -12.52 3.81 -180.61 -0.69 -13.21 16 27 H 0.25 6.61 7.80 -4.41 -0.03 6.58 16 28 H 0.08 3.74 7.26 -2.39 -0.02 3.72 16 29 H 0.10 4.85 6.83 -2.39 -0.02 4.84 16 30 H 0.29 11.71 8.30 -92.71 -0.77 10.94 16 31 H 0.19 5.37 7.69 -2.91 -0.02 5.35 16 32 H 0.23 4.04 8.06 -2.91 -0.02 4.02 16 33 H 0.41 5.71 7.75 -92.71 -0.72 4.99 16 34 H 0.41 6.80 8.93 -92.71 -0.83 5.98 16 35 H 0.24 4.98 7.46 -2.91 -0.02 4.96 16 Total: -1.00 -72.23 320.82 3.22 -69.01 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: -0.35 Total: 28.80 kcal Atomic # 6 Polarization: 35.92 SS G_CDS: 7.76 Total: 43.68 kcal Atomic # 7 Polarization: -119.82 SS G_CDS: -6.07 Total: -125.88 kcal Atomic # 8 Polarization: -53.03 SS G_CDS: -0.14 Total: -53.17 kcal Atomic # 14 Polarization: 35.55 SS G_CDS: 2.03 Total: 37.58 kcal Total: -72.23 3.22 -69.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116915435.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.966 kcal (2) G-P(sol) polarization free energy of solvation -72.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds