Wall clock time and date at job start Fri Apr 10 2020 18:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86805 * 119.99541 * 2 1 4 4 H 1.48502 * 109.46760 * 269.99583 * 3 2 1 5 5 H 1.48503 * 109.47261 * 29.99301 * 3 2 1 6 6 H 1.48496 * 109.47068 * 149.99627 * 3 2 1 7 7 C 1.38791 * 120.00358 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00028 * 359.97438 * 7 2 1 9 9 S 1.76199 * 120.00023 * 180.02562 * 7 2 1 10 10 C 1.81003 * 99.99856 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47254 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99683 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00180 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00247 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47345 * 179.97438 * 14 13 11 16 16 N 1.46905 * 109.47039 * 180.02562 * 15 14 13 17 17 C 1.46901 * 110.99870 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.46943 * 180.02562 * 17 16 15 19 19 C 1.38244 * 120.40074 * 269.72284 * 18 17 16 20 20 N 1.31846 * 120.81631 * 179.68386 * 19 18 17 21 21 C 1.31872 * 121.75184 * 0.62540 * 20 19 18 22 22 C 1.38426 * 120.72478 * 359.66440 * 21 20 19 23 23 F 1.35105 * 120.43997 * 180.02562 * 22 21 20 24 24 C 1.38581 * 120.41043 * 89.99878 * 18 17 16 25 25 H 0.96995 * 120.00226 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46873 * 60.00093 * 10 9 7 27 27 H 1.08998 * 109.47428 * 299.99755 * 10 9 7 28 28 H 0.97001 * 119.99992 * 0.02562 * 13 11 10 29 29 H 1.09001 * 109.46535 * 59.99860 * 14 13 11 30 30 H 1.08998 * 109.46918 * 300.00331 * 14 13 11 31 31 H 1.09001 * 109.47393 * 60.00416 * 15 14 13 32 32 H 1.08998 * 109.47408 * 300.00062 * 15 14 13 33 33 H 1.00901 * 110.99869 * 56.04956 * 16 15 14 34 34 H 1.09004 * 109.47031 * 299.99620 * 17 16 15 35 35 H 1.08995 * 109.47111 * 59.99900 * 17 16 15 36 36 H 1.07993 * 119.58822 * 359.97438 * 19 18 17 37 37 H 1.07994 * 119.63963 * 179.67890 * 21 20 19 38 38 H 1.08006 * 120.79885 * 359.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6179 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5478 1.4404 0.7001 7 6 2.0104 -1.2019 0.0005 8 1 1.4705 -2.1373 0.0014 9 16 3.7724 -1.2018 0.0012 10 6 4.0868 -2.9843 0.0025 11 6 5.5733 -3.2323 0.0026 12 8 6.3442 -2.2960 0.0024 13 7 6.0459 -4.4944 0.0041 14 6 7.4910 -4.7355 0.0048 15 6 7.7567 -6.2421 0.0070 16 7 9.2058 -6.4838 0.0083 17 6 9.4994 -7.9232 0.0099 18 6 10.9919 -8.1313 0.0118 19 6 11.6854 -8.2347 -1.1796 20 7 12.9920 -8.4106 -1.1875 21 6 13.6861 -8.5070 -0.0704 22 6 13.0599 -8.4189 1.1611 23 9 13.7767 -8.5179 2.3020 24 6 11.6853 -8.2271 1.2079 25 1 -0.4850 0.8400 -0.0004 26 1 3.6442 -3.4320 -0.8874 27 1 3.6436 -3.4308 0.8926 28 1 5.4293 -5.2432 0.0047 29 1 7.9336 -4.2875 0.8944 30 1 7.9341 -4.2893 -0.8855 31 1 7.3141 -6.6906 -0.8824 32 1 7.3136 -6.6879 0.8975 33 1 9.6484 -6.0233 0.7894 34 1 9.0679 -8.3810 0.9001 35 1 9.0692 -8.3827 -0.8799 36 1 11.1508 -8.1658 -2.1154 37 1 14.7547 -8.6561 -0.1167 38 1 11.1691 -8.1540 2.1538 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123791988.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:30 Heat of formation + Delta-G solvation = -48.406804 kcal Electronic energy + Delta-G solvation = -21334.340501 eV Core-core repulsion = 17638.387964 eV Total energy + Delta-G solvation = -3695.952537 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.100 amu Computer time = 5.65 seconds Orbital eigenvalues (eV) -49.50350 -40.71559 -39.35677 -37.25753 -34.80133 -33.04289 -32.45324 -31.74013 -30.14871 -28.14588 -25.74441 -25.49638 -24.27187 -22.53513 -22.44535 -20.52327 -18.10507 -17.92631 -17.82720 -17.38478 -16.54522 -16.46596 -16.27547 -16.10301 -15.31605 -15.06976 -14.94772 -14.62985 -14.42003 -13.90812 -13.79225 -13.66400 -13.62712 -13.29616 -13.21778 -12.81065 -12.40774 -12.25242 -11.96013 -11.62298 -11.28073 -11.01894 -10.63338 -10.44137 -10.19387 -9.87514 -9.60051 -9.48334 -9.07210 -9.04974 -8.99920 -8.52067 -6.93782 -6.30439 -4.02484 0.30973 0.47169 2.68237 2.93684 2.97391 3.22688 3.32447 3.40596 3.49590 3.56907 3.83142 3.94887 4.07807 4.11826 4.29727 4.31941 4.43354 4.57514 4.65573 4.73696 4.82605 5.03140 5.08633 5.09636 5.20793 5.23170 5.27365 5.47321 5.61807 5.73037 5.75695 5.98016 6.02519 6.28040 6.46232 6.71925 7.25030 7.53946 7.92524 8.39754 8.44405 9.15735 10.78706 Molecular weight = 313.10amu Principal moments of inertia in cm(-1) A = 0.039931 B = 0.001694 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.049551 B =16522.813445 C =16699.824528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.737 5.737 14 C 0.122 3.878 15 C 0.049 3.951 16 N -0.681 5.681 17 C 0.102 3.898 18 C -0.106 4.106 19 C 0.113 3.887 20 N -0.457 5.457 21 C 0.074 3.926 22 C 0.048 3.952 23 F -0.130 7.130 24 C -0.104 4.104 25 H 0.271 0.729 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.399 0.601 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.347 0.653 34 H 0.048 0.952 35 H 0.093 0.907 36 H 0.167 0.833 37 H 0.168 0.832 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.991 -22.077 1.484 31.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.392 5.392 14 C -0.002 4.002 15 C -0.080 4.080 16 N -0.313 5.313 17 C -0.027 4.027 18 C -0.108 4.108 19 C -0.045 4.045 20 N -0.164 5.164 21 C -0.084 4.084 22 C 0.027 3.973 23 F -0.108 7.108 24 C -0.131 4.131 25 H 0.081 0.919 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.233 0.767 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.058 0.942 33 H 0.165 0.835 34 H 0.066 0.934 35 H 0.111 0.889 36 H 0.184 0.816 37 H 0.185 0.815 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 24.630 -20.400 0.039 31.981 hybrid contribution -1.622 -0.897 2.006 2.731 sum 23.007 -21.297 2.045 31.418 Atomic orbital electron populations 1.69938 1.05908 1.27785 1.48029 1.24714 0.94457 0.98977 0.93155 0.86734 0.81884 0.83261 0.79968 1.19175 1.19932 1.15928 1.22314 0.88258 0.97547 1.58848 0.89378 1.84812 1.09293 0.99999 1.97429 1.23278 0.93891 1.04460 1.05836 1.20276 0.90622 0.82166 0.75236 1.90712 1.58785 1.42159 1.47511 1.45845 1.07233 1.08189 1.77980 1.21135 0.81581 0.94370 1.03132 1.22125 0.88113 0.96103 1.01679 1.60345 1.10347 1.09798 1.50838 1.20827 0.89865 0.89404 1.02597 1.20710 0.97208 0.99836 0.93071 1.22848 0.89509 0.94012 0.98144 1.67807 1.08548 1.10708 1.29329 1.22983 1.01389 0.97800 0.86232 1.18800 0.90461 1.04521 0.83562 1.91545 1.77671 1.93532 1.48090 1.21613 0.92527 0.98949 1.00048 0.91929 0.88430 0.88452 0.76701 0.91755 0.90508 0.89840 0.94188 0.83505 0.93420 0.88885 0.81609 0.81533 0.83633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.39 13.97 55.49 0.78 -25.61 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.68 27.74 -169.99 -4.72 16.97 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 7 C -0.52 -14.92 10.04 30.94 0.31 -14.61 16 8 H 0.09 2.62 8.03 -52.48 -0.42 2.19 16 9 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 10 C -0.12 -2.33 6.16 36.01 0.22 -2.10 16 11 C 0.53 9.11 7.85 -10.99 -0.09 9.03 16 12 O -0.52 -11.02 15.86 5.55 0.09 -10.93 16 13 N -0.74 -8.56 5.56 -60.30 -0.33 -8.90 16 14 C 0.12 1.22 5.93 -4.04 -0.02 1.19 16 15 C 0.05 0.31 5.80 -3.82 -0.02 0.29 16 16 N -0.68 -4.07 6.49 -115.06 -0.75 -4.81 16 17 C 0.10 0.45 5.84 -4.98 -0.03 0.42 16 18 C -0.11 -0.59 5.41 -104.49 -0.57 -1.15 16 19 C 0.11 0.73 10.86 -17.54 -0.19 0.54 16 20 N -0.46 -3.66 10.36 -13.20 -0.14 -3.80 16 21 C 0.07 0.51 11.17 -17.46 -0.20 0.31 16 22 C 0.05 0.33 7.35 -39.28 -0.29 0.04 16 23 F -0.13 -0.98 17.28 2.25 0.04 -0.94 16 24 C -0.10 -0.59 9.85 -39.22 -0.39 -0.98 16 25 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 27 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 28 H 0.40 3.38 8.47 -40.82 -0.35 3.03 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.35 2.02 8.72 -39.29 -0.34 1.67 16 34 H 0.05 0.17 8.09 -51.93 -0.42 -0.25 16 35 H 0.09 0.34 8.09 -51.93 -0.42 -0.08 16 36 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.15 0.59 8.06 -52.48 -0.42 0.16 16 LS Contribution 351.25 15.07 5.29 5.29 Total: -1.00 -34.94 351.25 -7.99 -42.93 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -4.91 Total: -0.32 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -1.35 Total: -4.34 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: -0.44 Total: -43.12 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 9 Polarization: -0.98 SS G_CDS: 0.04 Total: -0.94 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.72 Total: 16.97 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.94 -7.99 -42.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123791988.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.473 kcal (2) G-P(sol) polarization free energy of solvation -34.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.65 seconds