Wall clock time and date at job start Fri Apr 10 2020 18:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86805 * 119.99541 * 2 1 4 4 H 1.48502 * 109.46760 * 269.99583 * 3 2 1 5 5 H 1.48503 * 109.47261 * 29.99301 * 3 2 1 6 6 H 1.48496 * 109.47068 * 149.99627 * 3 2 1 7 7 C 1.38791 * 120.00358 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00028 * 359.97438 * 7 2 1 9 9 S 1.76199 * 120.00023 * 180.02562 * 7 2 1 10 10 C 1.81003 * 99.99856 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47254 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99683 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00180 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00247 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47345 * 179.97438 * 14 13 11 16 16 N 1.46905 * 109.47039 * 180.02562 * 15 14 13 17 17 C 1.46901 * 110.99870 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.46943 * 180.02562 * 17 16 15 19 19 C 1.38244 * 120.40074 * 269.72284 * 18 17 16 20 20 N 1.31846 * 120.81631 * 179.68386 * 19 18 17 21 21 C 1.31872 * 121.75184 * 0.62540 * 20 19 18 22 22 C 1.38426 * 120.72478 * 359.66440 * 21 20 19 23 23 F 1.35105 * 120.43997 * 180.02562 * 22 21 20 24 24 C 1.38581 * 120.41043 * 89.99878 * 18 17 16 25 25 H 0.96995 * 120.00226 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46873 * 60.00093 * 10 9 7 27 27 H 1.08998 * 109.47428 * 299.99755 * 10 9 7 28 28 H 0.97001 * 119.99992 * 0.02562 * 13 11 10 29 29 H 1.09001 * 109.46535 * 59.99860 * 14 13 11 30 30 H 1.08998 * 109.46918 * 300.00331 * 14 13 11 31 31 H 1.09001 * 109.47393 * 60.00416 * 15 14 13 32 32 H 1.08998 * 109.47408 * 300.00062 * 15 14 13 33 33 H 1.00901 * 110.99869 * 56.04956 * 16 15 14 34 34 H 1.09004 * 109.47031 * 299.99620 * 17 16 15 35 35 H 1.08995 * 109.47111 * 59.99900 * 17 16 15 36 36 H 1.07993 * 119.58822 * 359.97438 * 19 18 17 37 37 H 1.07994 * 119.63963 * 179.67890 * 21 20 19 38 38 H 1.08006 * 120.79885 * 359.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6179 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5478 1.4404 0.7001 7 6 2.0104 -1.2019 0.0005 8 1 1.4705 -2.1373 0.0014 9 16 3.7724 -1.2018 0.0012 10 6 4.0868 -2.9843 0.0025 11 6 5.5733 -3.2323 0.0026 12 8 6.3442 -2.2960 0.0024 13 7 6.0459 -4.4944 0.0041 14 6 7.4910 -4.7355 0.0048 15 6 7.7567 -6.2421 0.0070 16 7 9.2058 -6.4838 0.0083 17 6 9.4994 -7.9232 0.0099 18 6 10.9919 -8.1313 0.0118 19 6 11.6854 -8.2347 -1.1796 20 7 12.9920 -8.4106 -1.1875 21 6 13.6861 -8.5070 -0.0704 22 6 13.0599 -8.4189 1.1611 23 9 13.7767 -8.5179 2.3020 24 6 11.6853 -8.2271 1.2079 25 1 -0.4850 0.8400 -0.0004 26 1 3.6442 -3.4320 -0.8874 27 1 3.6436 -3.4308 0.8926 28 1 5.4293 -5.2432 0.0047 29 1 7.9336 -4.2875 0.8944 30 1 7.9341 -4.2893 -0.8855 31 1 7.3141 -6.6906 -0.8824 32 1 7.3136 -6.6879 0.8975 33 1 9.6484 -6.0233 0.7894 34 1 9.0679 -8.3810 0.9001 35 1 9.0692 -8.3827 -0.8799 36 1 11.1508 -8.1658 -2.1154 37 1 14.7547 -8.6561 -0.1167 38 1 11.1691 -8.1540 2.1538 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123791988.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:25 Heat of formation + Delta-G solvation = -75.182435 kcal Electronic energy + Delta-G solvation = -21335.501579 eV Core-core repulsion = 17638.387964 eV Total energy + Delta-G solvation = -3697.113615 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.100 amu Computer time = 4.47 seconds Orbital eigenvalues (eV) -50.03087 -41.17598 -40.64249 -37.85122 -35.74456 -34.66477 -33.66427 -32.29126 -31.32399 -29.00854 -27.83831 -26.18587 -24.74612 -23.17024 -22.91484 -21.80008 -19.89545 -18.50548 -18.40699 -17.91906 -17.79149 -17.33938 -17.07465 -16.99118 -16.86287 -16.30925 -15.91922 -15.44796 -15.25524 -15.01136 -14.89272 -14.63567 -14.38588 -14.18154 -14.11510 -13.74249 -13.59797 -13.34014 -13.01712 -12.81457 -12.65180 -12.55397 -12.37439 -11.86296 -11.16591 -11.06772 -10.88448 -10.67165 -10.52450 -10.14575 -9.97102 -9.45871 -8.98990 -8.51030 -6.21761 -0.15375 0.01613 0.99792 1.31985 1.47365 1.56145 1.57252 2.16010 2.25763 2.54915 2.72375 2.87300 2.94460 3.33636 3.46505 3.64774 3.71393 3.83843 3.88462 3.98147 4.12564 4.14105 4.26036 4.40102 4.48836 4.52856 4.72250 4.79439 4.81639 4.94604 4.95976 5.06420 5.38748 5.58039 5.71288 5.88662 6.12069 6.28795 6.47711 6.77958 6.94401 7.20775 8.61161 Molecular weight = 313.10amu Principal moments of inertia in cm(-1) A = 0.039931 B = 0.001694 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.049551 B =16522.813445 C =16699.824528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.046 3.954 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.260 1.260 6 H -0.237 1.237 7 C -0.528 4.528 8 H 0.064 0.936 9 S -0.180 6.180 10 C -0.111 4.111 11 C 0.535 3.465 12 O -0.565 6.565 13 N -0.710 5.710 14 C 0.123 3.877 15 C 0.062 3.938 16 N -0.693 5.693 17 C 0.107 3.893 18 C -0.102 4.102 19 C 0.104 3.896 20 N -0.483 5.483 21 C 0.066 3.934 22 C 0.035 3.965 23 F -0.137 7.137 24 C -0.102 4.102 25 H 0.277 0.723 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.419 0.581 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.347 0.653 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.179 0.821 37 H 0.180 0.820 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.624 -23.387 1.690 33.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.161 1.161 7 C -0.676 4.676 8 H 0.082 0.918 9 S 0.047 5.953 10 C -0.262 4.262 11 C 0.320 3.680 12 O -0.443 6.443 13 N -0.364 5.364 14 C -0.001 4.001 15 C -0.067 4.067 16 N -0.325 5.325 17 C -0.022 4.022 18 C -0.105 4.105 19 C -0.054 4.054 20 N -0.191 5.191 21 C -0.092 4.092 22 C 0.013 3.987 23 F -0.116 7.116 24 C -0.129 4.129 25 H 0.086 0.914 26 H 0.133 0.867 27 H 0.134 0.866 28 H 0.256 0.744 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.075 0.925 33 H 0.165 0.835 34 H 0.081 0.919 35 H 0.123 0.877 36 H 0.196 0.804 37 H 0.197 0.803 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 25.258 -21.780 0.247 33.352 hybrid contribution -1.777 -0.670 1.929 2.707 sum 23.481 -22.450 2.177 32.559 Atomic orbital electron populations 1.70014 1.07259 1.28993 1.49171 1.25553 0.95266 1.02219 0.92934 0.85877 0.80675 0.79688 0.80193 1.18744 1.18393 1.16112 1.22462 0.90223 0.96719 1.58184 0.91803 1.84761 1.06466 1.06488 1.97597 1.23271 0.95809 0.99438 1.07641 1.19958 0.89408 0.83380 0.75270 1.90703 1.59399 1.43973 1.50238 1.45569 1.08647 1.06839 1.75361 1.21229 0.79777 0.97166 1.01966 1.21983 0.88596 0.93020 1.03085 1.60314 1.10084 1.10901 1.51165 1.20855 0.88932 0.88477 1.03905 1.20802 0.97857 0.99271 0.92552 1.23168 0.89307 0.93649 0.99229 1.67815 1.09468 1.11838 1.29953 1.23221 1.02163 0.97645 0.86172 1.18933 0.91052 1.05360 0.83335 1.91525 1.77941 1.93710 1.48389 1.21858 0.92143 0.97953 1.00986 0.91392 0.86653 0.86610 0.74395 0.92530 0.92205 0.88664 0.92463 0.83493 0.91894 0.87746 0.80359 0.80260 0.81890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.34 13.97 21.65 0.30 -55.04 16 2 C 0.05 2.66 5.50 84.85 0.47 3.13 16 3 Si 0.91 44.75 27.74 68.60 1.90 46.65 16 4 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.24 -11.61 6.74 99.48 0.67 -10.94 16 7 C -0.53 -30.37 10.04 67.95 0.68 -29.69 16 8 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 9 S -0.18 -8.95 18.55 -56.49 -1.05 -10.00 16 10 C -0.11 -3.97 6.16 71.24 0.44 -3.53 16 11 C 0.53 17.40 7.85 87.66 0.69 18.09 16 12 O -0.56 -23.67 15.86 -3.04 -0.05 -23.71 16 13 N -0.71 -14.51 5.56 -463.07 -2.57 -17.08 16 14 C 0.12 2.16 5.93 86.38 0.51 2.67 16 15 C 0.06 0.56 5.80 86.30 0.50 1.06 16 16 N -0.69 -6.29 6.49 -517.93 -3.36 -9.65 16 17 C 0.11 0.61 5.84 85.56 0.50 1.11 16 18 C -0.10 -0.92 5.41 -19.78 -0.11 -1.03 16 19 C 0.10 1.22 10.86 84.69 0.92 2.14 16 20 N -0.48 -7.45 10.36 -195.66 -2.03 -9.47 16 21 C 0.07 0.87 11.17 84.73 0.95 1.82 16 22 C 0.03 0.44 7.35 22.47 0.17 0.61 16 23 F -0.14 -1.99 17.28 44.97 0.78 -1.21 16 24 C -0.10 -0.99 9.85 22.50 0.22 -0.77 16 25 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 26 H 0.12 3.75 8.14 -2.39 -0.02 3.73 16 27 H 0.12 3.75 8.14 -2.40 -0.02 3.73 16 28 H 0.42 5.47 8.47 -92.71 -0.79 4.69 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.35 3.18 8.72 -89.69 -0.78 2.40 16 34 H 0.06 0.21 8.09 -2.39 -0.02 0.19 16 35 H 0.10 0.39 8.09 -2.39 -0.02 0.37 16 36 H 0.18 1.45 8.06 -2.91 -0.02 1.42 16 37 H 0.18 1.64 8.06 -2.91 -0.02 1.61 16 38 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 Total: -1.00 -76.34 351.25 -0.64 -76.98 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -0.50 Total: 6.92 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 5.93 Total: -4.40 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -7.66 Total: -91.24 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.05 Total: -23.71 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.78 Total: -1.21 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.90 Total: 46.65 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -1.05 Total: -10.00 kcal Total: -76.34 -0.64 -76.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123791988.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.800 kcal (2) G-P(sol) polarization free energy of solvation -76.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.48 seconds