Wall clock time and date at job start Fri Apr 10 2020 18:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47383 * 2 1 4 4 N 1.30173 * 126.80696 * 270.02999 * 3 2 1 5 5 O 1.20915 * 111.60588 * 179.97438 * 4 3 2 6 6 C 1.34037 * 111.57016 * 359.75694 * 5 4 3 7 7 C 1.35451 * 106.44520 * 0.38190 * 6 5 4 8 8 C 1.50704 * 128.00958 * 179.90828 * 7 6 5 9 9 N 1.46895 * 109.47030 * 259.68216 * 8 7 6 10 10 C 1.46906 * 110.99789 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47053 * 179.97438 * 10 9 8 12 12 N 1.46496 * 109.47237 * 180.02562 * 11 10 9 13 13 C 1.34779 * 120.00447 * 180.02562 * 12 11 10 14 14 O 1.21272 * 119.99366 * 0.02562 * 13 12 11 15 15 C 1.50696 * 119.99877 * 180.02562 * 13 12 11 16 16 S 1.81002 * 109.46686 * 179.97438 * 15 13 12 17 17 C 1.76198 * 99.99878 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00130 * 0.02562 * 17 16 15 19 19 C 1.38805 * 119.99971 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99862 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99970 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47161 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46791 * 119.99954 * 21 19 17 24 24 H 1.48501 * 109.47061 * 240.00250 * 21 19 17 25 25 H 1.08996 * 109.46979 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46904 * 300.00113 * 1 2 3 27 27 H 1.09001 * 109.47103 * 59.99293 * 1 2 3 28 28 H 1.09007 * 109.46814 * 240.00276 * 2 1 3 29 29 H 1.09001 * 109.47103 * 120.00707 * 2 1 3 30 30 H 1.08002 * 126.77868 * 180.28905 * 6 5 4 31 31 H 1.08996 * 109.46908 * 139.68034 * 8 7 6 32 32 H 1.09002 * 109.46622 * 19.68207 * 8 7 6 33 33 H 1.00899 * 111.00672 * 56.04735 * 9 8 7 34 34 H 1.08992 * 109.47459 * 299.99826 * 10 9 8 35 35 H 1.09004 * 109.47040 * 59.99976 * 10 9 8 36 36 H 1.09001 * 109.47142 * 300.00160 * 11 10 9 37 37 H 1.09004 * 109.47006 * 60.00213 * 11 10 9 38 38 H 0.97006 * 119.99755 * 359.97438 * 12 11 10 39 39 H 1.09001 * 109.47332 * 299.99611 * 15 13 12 40 40 H 1.08996 * 109.47524 * 60.00287 * 15 13 12 41 41 H 0.97003 * 119.99847 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2919 2.1563 -1.0422 5 8 2.6806 3.2565 -0.7252 6 6 2.7254 3.3983 0.6069 7 6 2.3146 2.2193 1.1321 8 6 2.1826 1.8470 2.5865 9 7 3.3482 1.0524 2.9962 10 6 3.2541 0.6711 4.4118 11 6 4.4826 -0.1539 4.8005 12 7 4.3885 -0.5347 6.2119 13 6 5.3660 -1.2697 6.7783 14 8 6.3237 -1.6154 6.1195 15 6 5.2688 -1.6618 8.2301 16 16 6.7222 -2.6377 8.6900 17 6 6.3570 -2.9502 10.3852 18 1 5.4481 -2.5635 10.8219 19 6 7.2370 -3.6942 11.1590 20 7 8.3445 -4.1659 10.6265 21 14 6.8501 -4.0250 12.9563 22 1 5.5550 -3.3896 13.3090 23 1 6.7598 -5.4899 13.1817 24 1 7.9277 -3.4587 13.8069 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.0305 4.2784 1.1536 31 1 1.2748 1.2614 2.7306 32 1 2.1302 2.7531 3.1901 33 1 4.2072 1.5488 2.8122 34 1 3.2094 1.5691 5.0278 35 1 2.3536 0.0774 4.5690 36 1 4.5269 -1.0520 4.1844 37 1 5.3834 0.4395 4.6431 38 1 3.6230 -0.2572 6.7391 39 1 5.2235 -0.7641 8.8468 40 1 4.3685 -2.2559 8.3866 41 1 8.9596 -4.6856 11.1673 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792497.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:51 Heat of formation + Delta-G solvation = 13.748577 kcal Electronic energy + Delta-G solvation = -22060.458843 eV Core-core repulsion = 18490.661871 eV Total energy + Delta-G solvation = -3569.796972 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -45.29867 -39.23770 -37.50913 -35.78065 -34.36025 -32.59269 -32.43963 -31.43526 -30.15961 -28.21867 -25.68531 -25.35601 -24.72207 -22.42999 -21.76029 -21.28209 -20.38897 -18.00164 -17.91299 -17.73127 -16.64536 -16.29277 -16.05415 -15.55995 -15.03335 -14.88260 -14.81864 -14.63705 -14.29040 -13.92325 -13.78971 -13.63627 -13.12653 -12.99808 -12.61628 -12.42553 -12.31815 -11.95654 -11.90605 -11.79456 -11.51845 -11.17800 -11.08192 -11.03291 -10.77199 -10.26031 -9.94198 -9.81998 -9.44565 -9.09223 -8.97159 -8.92490 -8.24502 -6.51424 -6.23059 -3.93654 1.08857 1.80489 2.85317 2.96628 3.07821 3.20512 3.25757 3.30306 3.55707 3.77537 4.06111 4.15940 4.18952 4.34934 4.58656 4.62973 4.79866 4.86887 4.90372 4.94661 5.03446 5.12177 5.12561 5.17736 5.24940 5.31490 5.53010 5.58871 5.60973 5.67818 5.71566 5.85087 5.86328 5.88219 6.11675 6.39665 6.57598 6.82983 7.58505 7.66067 7.92230 8.34063 8.58643 9.22356 10.84409 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.036440 B = 0.001742 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.200449 B =16068.719200 C =16205.392857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C 0.043 3.957 4 N -0.368 5.368 5 O 0.097 5.903 6 C -0.054 4.054 7 C -0.198 4.198 8 C 0.138 3.862 9 N -0.681 5.681 10 C 0.050 3.950 11 C 0.123 3.877 12 N -0.739 5.739 13 C 0.532 3.468 14 O -0.515 6.515 15 C -0.153 4.153 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.214 0.786 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.347 0.653 34 H 0.039 0.961 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.397 0.603 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.255 15.628 -17.792 29.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 C -0.117 4.117 4 N -0.073 5.073 5 O 0.033 5.967 6 C -0.137 4.137 7 C -0.202 4.202 8 C 0.009 3.991 9 N -0.314 5.314 10 C -0.080 4.080 11 C -0.002 4.002 12 N -0.395 5.395 13 C 0.318 3.682 14 O -0.389 6.389 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.746 3.254 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.231 0.769 31 H 0.106 0.894 32 H 0.064 0.936 33 H 0.165 0.835 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.231 0.769 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.807 14.157 -20.435 29.459 hybrid contribution -1.473 1.257 3.468 3.972 sum -17.280 15.413 -16.967 28.706 Atomic orbital electron populations 1.21714 0.94110 1.02420 1.02076 1.19992 0.96087 0.88135 1.04503 1.23506 1.01029 0.99162 0.87991 1.73866 1.16401 0.92786 1.24284 1.84839 1.62226 1.26818 1.22821 1.25845 1.02798 1.01054 0.83984 1.21146 1.07805 0.93881 0.97401 1.20075 0.94913 0.96254 0.87836 1.60303 1.04929 1.47232 1.18897 1.22111 0.99239 0.98704 0.87899 1.21122 0.97042 0.99608 0.82413 1.45895 1.25201 1.56943 1.11445 1.20298 0.81759 0.76982 0.89143 1.90711 1.31437 1.52807 1.63972 1.23526 1.07646 1.04990 0.94213 1.85423 1.21425 1.64945 1.11615 1.22909 1.10158 1.39708 0.95582 0.90861 1.25005 0.94484 0.94879 0.99283 1.70030 1.10077 1.33602 1.36534 0.86110 0.78422 0.78166 0.82748 1.19627 1.20559 1.20566 0.91498 0.92480 0.92679 0.90211 0.88516 0.76913 0.89350 0.93594 0.83490 0.94319 0.90054 0.90629 0.91799 0.76903 0.89231 0.89174 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.90 37.16 0.37 -0.52 16 2 C -0.05 -0.36 6.44 -27.88 -0.18 -0.54 16 3 C 0.04 0.38 6.58 -82.10 -0.54 -0.16 16 4 N -0.37 -3.82 12.07 33.42 0.40 -3.42 16 5 O 0.10 0.84 11.20 17.19 0.19 1.03 16 6 C -0.05 -0.31 12.26 29.74 0.36 0.05 16 7 C -0.20 -1.37 5.84 -104.42 -0.61 -1.98 16 8 C 0.14 0.77 6.17 -4.98 -0.03 0.73 16 9 N -0.68 -4.61 6.49 -115.06 -0.75 -5.36 16 10 C 0.05 0.35 5.80 -3.82 -0.02 0.32 16 11 C 0.12 1.32 5.93 -4.04 -0.02 1.29 16 12 N -0.74 -9.21 5.56 -60.30 -0.33 -9.54 16 13 C 0.53 9.70 7.85 -10.99 -0.09 9.61 16 14 O -0.52 -11.64 15.86 5.56 0.09 -11.55 16 15 C -0.15 -3.02 6.16 36.00 0.22 -2.80 16 16 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 17 C -0.54 -15.14 9.50 30.94 0.29 -14.85 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 20 N -0.87 -26.06 13.22 55.49 0.73 -25.33 16 21 Si 0.92 21.26 29.55 -169.99 -5.02 16.23 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.61 8.14 -51.92 -0.42 0.18 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.21 0.36 8.06 -52.49 -0.42 -0.06 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.35 2.28 8.72 -39.29 -0.34 1.93 16 34 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.40 3.66 8.47 -40.82 -0.35 3.31 16 39 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 40 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 41 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -35.80 370.98 -7.80 -43.60 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -6.15 Total: -0.54 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -0.34 Total: -6.87 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.06 Total: -43.64 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.28 Total: -10.52 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.80 -7.80 -43.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792497.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.346 kcal (2) G-P(sol) polarization free energy of solvation -35.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds