Wall clock time and date at job start Fri Apr 10 2020 18:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47383 * 2 1 4 4 N 1.30173 * 126.80696 * 270.02999 * 3 2 1 5 5 O 1.20915 * 111.60588 * 179.97438 * 4 3 2 6 6 C 1.34037 * 111.57016 * 359.75694 * 5 4 3 7 7 C 1.35451 * 106.44520 * 0.38190 * 6 5 4 8 8 C 1.50704 * 128.00958 * 179.90828 * 7 6 5 9 9 N 1.46895 * 109.47030 * 259.68216 * 8 7 6 10 10 C 1.46906 * 110.99789 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47053 * 179.97438 * 10 9 8 12 12 N 1.46496 * 109.47237 * 180.02562 * 11 10 9 13 13 C 1.34779 * 120.00447 * 180.02562 * 12 11 10 14 14 O 1.21272 * 119.99366 * 0.02562 * 13 12 11 15 15 C 1.50696 * 119.99877 * 180.02562 * 13 12 11 16 16 S 1.81002 * 109.46686 * 179.97438 * 15 13 12 17 17 C 1.76198 * 99.99878 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00130 * 0.02562 * 17 16 15 19 19 C 1.38805 * 119.99971 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99862 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99970 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47161 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46791 * 119.99954 * 21 19 17 24 24 H 1.48501 * 109.47061 * 240.00250 * 21 19 17 25 25 H 1.08996 * 109.46979 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46904 * 300.00113 * 1 2 3 27 27 H 1.09001 * 109.47103 * 59.99293 * 1 2 3 28 28 H 1.09007 * 109.46814 * 240.00276 * 2 1 3 29 29 H 1.09001 * 109.47103 * 120.00707 * 2 1 3 30 30 H 1.08002 * 126.77868 * 180.28905 * 6 5 4 31 31 H 1.08996 * 109.46908 * 139.68034 * 8 7 6 32 32 H 1.09002 * 109.46622 * 19.68207 * 8 7 6 33 33 H 1.00899 * 111.00672 * 56.04735 * 9 8 7 34 34 H 1.08992 * 109.47459 * 299.99826 * 10 9 8 35 35 H 1.09004 * 109.47040 * 59.99976 * 10 9 8 36 36 H 1.09001 * 109.47142 * 300.00160 * 11 10 9 37 37 H 1.09004 * 109.47006 * 60.00213 * 11 10 9 38 38 H 0.97006 * 119.99755 * 359.97438 * 12 11 10 39 39 H 1.09001 * 109.47332 * 299.99611 * 15 13 12 40 40 H 1.08996 * 109.47524 * 60.00287 * 15 13 12 41 41 H 0.97003 * 119.99847 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2919 2.1563 -1.0422 5 8 2.6806 3.2565 -0.7252 6 6 2.7254 3.3983 0.6069 7 6 2.3146 2.2193 1.1321 8 6 2.1826 1.8470 2.5865 9 7 3.3482 1.0524 2.9962 10 6 3.2541 0.6711 4.4118 11 6 4.4826 -0.1539 4.8005 12 7 4.3885 -0.5347 6.2119 13 6 5.3660 -1.2697 6.7783 14 8 6.3237 -1.6154 6.1195 15 6 5.2688 -1.6618 8.2301 16 16 6.7222 -2.6377 8.6900 17 6 6.3570 -2.9502 10.3852 18 1 5.4481 -2.5635 10.8219 19 6 7.2370 -3.6942 11.1590 20 7 8.3445 -4.1659 10.6265 21 14 6.8501 -4.0250 12.9563 22 1 5.5550 -3.3896 13.3090 23 1 6.7598 -5.4899 13.1817 24 1 7.9277 -3.4587 13.8069 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.0305 4.2784 1.1536 31 1 1.2748 1.2614 2.7306 32 1 2.1302 2.7531 3.1901 33 1 4.2072 1.5488 2.8122 34 1 3.2094 1.5691 5.0278 35 1 2.3536 0.0774 4.5690 36 1 4.5269 -1.0520 4.1844 37 1 5.3834 0.4395 4.6431 38 1 3.6230 -0.2572 6.7391 39 1 5.2235 -0.7641 8.8468 40 1 4.3685 -2.2559 8.3866 41 1 8.9596 -4.6856 11.1673 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123792497.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:46 Heat of formation + Delta-G solvation = -13.514078 kcal Electronic energy + Delta-G solvation = -22061.641040 eV Core-core repulsion = 18490.661871 eV Total energy + Delta-G solvation = -3570.979170 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 5.42 seconds Orbital eigenvalues (eV) -45.89231 -40.60459 -38.12943 -36.51233 -35.31585 -34.57486 -33.25031 -32.02593 -31.41266 -29.19195 -27.65793 -26.20712 -25.27329 -23.13825 -22.33437 -21.81489 -21.73851 -19.83805 -18.56223 -18.40480 -17.81150 -17.32368 -17.07707 -16.87139 -16.48408 -15.95118 -15.86364 -15.41765 -15.10921 -15.06784 -14.67605 -14.49309 -14.25802 -14.24006 -13.58202 -13.51153 -13.15002 -12.96321 -12.91004 -12.77198 -12.59160 -12.45920 -12.42688 -12.28765 -11.73951 -11.69897 -11.15174 -11.00270 -10.83436 -10.45648 -10.25580 -10.11647 -9.42585 -8.65898 -8.34013 -6.11985 0.59601 1.21306 1.29224 1.42376 1.48594 1.59274 1.62860 2.23222 2.28938 2.44488 3.00309 3.18054 3.32018 3.48154 3.63217 3.85661 3.96558 4.07164 4.10284 4.19472 4.33357 4.36671 4.37902 4.45404 4.53256 4.53650 4.63334 4.81539 4.86318 4.95678 4.98159 5.02539 5.11514 5.15592 5.33393 5.42371 5.43384 5.94414 6.20984 6.33881 6.52611 7.07492 7.26845 7.37563 8.75431 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.036440 B = 0.001742 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.200449 B =16068.719200 C =16205.392857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.049 4.049 3 C 0.029 3.971 4 N -0.406 5.406 5 O 0.082 5.918 6 C -0.040 4.040 7 C -0.209 4.209 8 C 0.144 3.856 9 N -0.694 5.694 10 C 0.065 3.935 11 C 0.123 3.877 12 N -0.710 5.710 13 C 0.533 3.467 14 O -0.568 6.568 15 C -0.128 4.128 16 S -0.156 6.156 17 C -0.544 4.544 18 H 0.084 0.916 19 C 0.011 3.989 20 N -0.912 5.912 21 Si 1.000 3.000 22 H -0.255 1.255 23 H -0.275 1.275 24 H -0.275 1.275 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.255 0.745 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.347 0.653 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.418 0.582 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.638 17.306 -16.191 30.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.087 4.087 3 C -0.131 4.131 4 N -0.114 5.114 5 O 0.021 5.979 6 C -0.122 4.122 7 C -0.214 4.214 8 C 0.016 3.984 9 N -0.326 5.326 10 C -0.064 4.064 11 C -0.001 4.001 12 N -0.365 5.365 13 C 0.319 3.681 14 O -0.446 6.446 15 C -0.280 4.280 16 S 0.071 5.929 17 C -0.692 4.692 18 H 0.103 0.897 19 C -0.193 4.193 20 N -0.549 5.549 21 Si 0.822 3.178 22 H -0.179 1.179 23 H -0.200 1.200 24 H -0.200 1.200 25 H 0.096 0.904 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.271 0.729 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.166 0.834 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.256 0.744 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.255 15.884 -18.844 30.670 hybrid contribution -0.788 0.824 2.863 3.082 sum -19.043 16.707 -15.981 29.952 Atomic orbital electron populations 1.21672 0.93100 1.03068 1.01886 1.20011 0.96939 0.87675 1.04060 1.23873 1.00844 0.99690 0.88655 1.73863 1.18217 0.93712 1.25576 1.84788 1.62368 1.26340 1.24419 1.26619 1.00713 1.01970 0.82858 1.21355 1.08344 0.93958 0.97707 1.20089 0.94245 0.97052 0.87037 1.60253 1.05546 1.48107 1.18738 1.21948 0.97228 0.98886 0.88363 1.21207 0.98964 0.99289 0.80623 1.45581 1.24080 1.54512 1.12329 1.20072 0.82199 0.77445 0.88424 1.90701 1.33832 1.55266 1.64793 1.23366 1.04205 1.04714 0.95690 1.85628 1.27150 1.67396 1.12718 1.23245 1.10585 1.39767 0.95615 0.89747 1.26153 0.94115 0.94410 1.04653 1.70197 1.11416 1.34587 1.38652 0.84890 0.78849 0.78140 0.75966 1.17880 1.20040 1.19997 0.90426 0.91786 0.93665 0.91157 0.88370 0.72904 0.89054 0.91320 0.83419 0.92290 0.88971 0.92592 0.92682 0.74450 0.86977 0.87042 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.90 71.98 0.71 -0.89 16 2 C -0.05 -0.71 6.44 29.85 0.19 -0.52 16 3 C 0.03 0.49 6.58 43.58 0.29 0.78 16 4 N -0.41 -8.49 12.07 -49.57 -0.60 -9.09 16 5 O 0.08 1.38 11.20 71.67 0.80 2.18 16 6 C -0.04 -0.37 12.26 67.18 0.82 0.45 16 7 C -0.21 -2.49 5.84 -19.73 -0.12 -2.61 16 8 C 0.14 1.15 6.17 85.56 0.53 1.68 16 9 N -0.69 -7.64 6.49 -517.93 -3.36 -11.00 16 10 C 0.07 0.69 5.80 86.30 0.50 1.19 16 11 C 0.12 2.43 5.93 86.38 0.51 2.94 16 12 N -0.71 -15.98 5.56 -463.07 -2.57 -18.55 16 13 C 0.53 18.92 7.85 87.66 0.69 19.61 16 14 O -0.57 -26.10 15.86 -3.00 -0.05 -26.15 16 15 C -0.13 -4.90 6.16 71.23 0.44 -4.46 16 16 S -0.16 -8.59 20.57 -56.49 -1.16 -9.75 16 17 C -0.54 -30.72 9.50 67.96 0.65 -30.07 16 18 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 19 C 0.01 0.64 5.49 84.86 0.47 1.10 16 20 N -0.91 -55.86 13.22 21.65 0.29 -55.58 16 21 Si 1.00 43.14 29.55 68.60 2.03 45.16 16 22 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 25 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.26 -0.10 8.06 -2.91 -0.02 -0.13 16 31 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.35 3.79 8.72 -89.69 -0.78 3.01 16 34 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.42 6.09 8.47 -92.70 -0.79 5.30 16 39 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 40 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 41 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -81.56 370.98 0.54 -81.03 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -0.52 Total: 12.54 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: 5.68 Total: -10.80 kcal Atomic # 7 Polarization: -87.96 SS G_CDS: -6.25 Total: -94.21 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: 0.75 Total: -23.97 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -81.56 0.54 -81.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792497.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.512 kcal (2) G-P(sol) polarization free energy of solvation -81.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.42 seconds