Wall clock time and date at job start Fri Apr 10 2020 18:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34962 * 125.97410 * 124.71196 * 10 9 7 12 12 C 1.35239 * 107.86411 * 179.83729 * 11 10 9 13 13 C 1.40425 * 107.86772 * 0.42152 * 12 11 10 14 14 N 1.40072 * 125.97888 * 179.73666 * 13 12 11 15 15 C 1.34778 * 119.99966 * 359.97438 * 14 13 12 16 16 O 1.21638 * 120.00154 * 0.02562 * 15 14 13 17 17 C 1.47286 * 119.99803 * 179.97438 * 15 14 13 18 18 C 1.39015 * 120.91021 * 359.72282 * 17 15 14 19 19 C 1.39713 * 119.29339 * 179.77603 * 18 17 15 20 20 C 1.35267 * 121.07684 * 0.51051 * 19 18 17 21 21 N 1.35717 * 121.57737 * 359.74186 * 20 19 18 22 22 N 1.40208 * 134.08883 * 179.97438 * 21 20 19 23 23 N 1.29019 * 106.96150 * 180.02562 * 22 21 20 24 24 N 1.28598 * 110.78371 * 0.02562 * 23 22 21 25 25 C 1.32046 * 110.21691 * 359.97438 * 24 23 22 26 26 N 1.31239 * 108.04414 * 359.74350 * 13 12 11 27 27 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 29 29 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 30 30 H 1.07999 * 126.07367 * 0.02562 * 11 10 9 31 31 H 1.07998 * 126.06709 * 180.16422 * 12 11 10 32 32 H 0.96997 * 119.99959 * 179.97438 * 14 13 12 33 33 H 1.08000 * 120.35125 * 359.97438 * 18 17 15 34 34 H 1.07998 * 119.46391 * 180.25434 * 19 18 17 35 35 H 1.07998 * 119.20788 * 179.71592 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2488 -4.6214 0.8836 12 6 3.2625 -5.4440 0.5303 13 6 3.8669 -4.9133 -0.6208 14 7 4.9597 -5.4621 -1.3039 15 6 5.5261 -6.6029 -0.8631 16 8 5.0880 -7.1562 0.1276 17 6 6.6749 -7.1801 -1.5818 18 6 7.1865 -6.5673 -2.7198 19 6 8.2802 -7.1416 -3.3725 20 6 8.8403 -8.2869 -2.9206 21 7 8.3696 -8.9210 -1.8169 22 7 8.7351 -10.0888 -1.1323 23 7 7.9253 -10.2096 -0.1352 24 7 7.0807 -9.2402 -0.1132 25 6 7.3043 -8.4171 -1.1213 26 7 3.2287 -3.8132 -0.9445 27 1 -0.4850 -0.8400 0.0004 28 1 0.6281 -2.5591 0.8866 29 1 0.6207 -2.5548 -0.8933 30 1 1.5907 -4.7507 1.7301 31 1 3.5577 -6.3465 1.0448 32 1 5.3088 -5.0211 -2.0941 33 1 6.7452 -5.6552 -3.0937 34 1 8.6825 -6.6656 -4.2545 35 1 9.6820 -8.7070 -3.4512 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147440450.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:01 Heat of formation + Delta-G solvation = 182.728648 kcal Electronic energy + Delta-G solvation = -24018.916481 eV Core-core repulsion = 20249.755491 eV Total energy + Delta-G solvation = -3769.160990 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.103 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.53452 -42.34884 -40.87258 -39.45815 -36.50393 -35.69105 -35.07434 -33.18061 -32.82903 -31.60156 -31.01794 -28.30375 -26.71748 -25.43514 -25.29645 -24.52915 -23.02883 -22.11807 -21.30200 -19.87803 -19.23180 -18.83245 -18.63832 -18.07998 -17.86243 -16.92530 -16.62906 -16.54132 -15.95612 -15.77333 -15.53654 -14.99542 -14.88389 -14.27427 -14.17028 -14.06193 -13.90285 -13.74079 -13.67124 -13.30863 -13.17419 -12.68305 -12.57274 -12.19810 -12.06559 -11.93567 -11.72246 -11.34600 -11.13148 -10.99862 -10.67224 -9.90058 -9.80015 -9.22147 -8.75668 -6.53857 -1.15698 -0.62974 0.50526 0.83779 0.97851 1.18687 1.33986 1.54026 1.60175 1.81488 1.88934 2.11549 2.33075 2.42066 2.51409 2.77559 3.03685 3.21912 3.52651 3.63531 3.86394 3.97055 4.10088 4.16347 4.28723 4.49976 4.58126 4.67515 4.71470 4.79022 4.82429 4.93227 5.08347 5.33133 5.56794 5.77822 5.91898 6.13305 6.27034 6.42159 6.83203 6.97938 7.13703 7.22204 8.60843 Molecular weight = 313.10amu Principal moments of inertia in cm(-1) A = 0.026304 B = 0.002639 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.216273 B =10606.836874 C =11332.110839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.019 4.019 3 Si 1.120 2.880 4 H -0.278 1.278 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.620 4.620 8 H 0.048 0.952 9 C 0.259 3.741 10 N -0.342 5.342 11 C 0.056 3.944 12 C -0.293 4.293 13 C 0.271 3.729 14 N -0.609 5.609 15 C 0.569 3.431 16 O -0.524 6.524 17 C -0.134 4.134 18 C 0.029 3.971 19 C -0.114 4.114 20 C 0.129 3.871 21 N -0.306 5.306 22 N -0.117 5.117 23 N -0.037 5.037 24 N -0.344 5.344 25 C 0.259 3.741 26 N -0.333 5.333 27 H 0.261 0.739 28 H 0.051 0.949 29 H 0.019 0.981 30 H 0.199 0.801 31 H 0.165 0.835 32 H 0.429 0.571 33 H 0.204 0.796 34 H 0.240 0.760 35 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.826 -12.266 -12.777 26.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.219 4.219 3 Si 0.941 3.059 4 H -0.203 1.203 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.658 4.658 8 H 0.067 0.933 9 C 0.140 3.860 10 N -0.124 5.124 11 C -0.092 4.092 12 C -0.324 4.324 13 C 0.016 3.984 14 N -0.260 5.260 15 C 0.356 3.644 16 O -0.398 6.398 17 C -0.144 4.144 18 C 0.004 3.996 19 C -0.137 4.137 20 C 0.003 3.997 21 N -0.086 5.086 22 N -0.100 5.100 23 N -0.030 5.030 24 N -0.203 5.203 25 C 0.001 3.999 26 N -0.164 5.164 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.037 0.963 30 H 0.216 0.784 31 H 0.182 0.818 32 H 0.269 0.731 33 H 0.221 0.779 34 H 0.256 0.744 35 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 19.443 -11.371 -11.926 25.486 hybrid contribution -0.190 -1.814 0.142 1.830 sum 19.253 -13.186 -11.784 26.142 Atomic orbital electron populations 1.70949 1.07553 1.30194 1.47392 1.27283 0.96403 1.06126 0.92091 0.82879 0.74133 0.71016 0.77905 1.20299 1.19817 1.19571 1.22287 0.94804 0.91962 1.56788 0.93315 1.19441 0.86411 0.82771 0.97409 1.48585 1.24063 1.20078 1.19627 1.23132 1.00566 0.88825 0.96676 1.21739 1.02311 1.06421 1.01891 1.19241 0.91577 0.93179 0.94393 1.42066 1.28842 1.24485 1.30610 1.17826 0.82761 0.79652 0.84142 1.90845 1.62499 1.60303 1.26171 1.19681 1.00014 0.93717 1.00998 1.22776 0.91706 0.97954 0.87125 1.21836 0.95133 0.93469 1.03252 1.23066 1.00059 0.93000 0.83554 1.49156 1.21138 1.17377 1.20954 1.82625 1.21611 0.99944 1.05849 1.78000 0.98704 1.15016 1.11261 1.75159 1.21673 1.02590 1.20832 1.23638 0.89436 0.96361 0.90436 1.77255 1.04438 1.17620 1.17045 0.92986 0.93076 0.96296 0.78404 0.81802 0.73094 0.77888 0.74350 0.75341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.13 13.65 21.45 0.29 -52.84 16 2 C -0.02 -1.06 5.46 84.65 0.46 -0.60 16 3 Si 1.12 48.06 29.90 68.60 2.05 50.11 16 4 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.62 -34.22 9.24 25.60 0.24 -33.99 16 8 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 9 C 0.26 12.97 5.57 85.64 0.48 13.44 16 10 N -0.34 -15.55 3.67 -351.84 -1.29 -16.84 16 11 C 0.06 2.19 11.43 83.52 0.95 3.14 16 12 C -0.29 -11.34 9.60 22.11 0.21 -11.13 16 13 C 0.27 10.11 8.11 133.35 1.08 11.19 16 14 N -0.61 -15.75 5.40 -310.59 -1.68 -17.43 16 15 C 0.57 15.40 7.74 86.62 0.67 16.07 16 16 O -0.52 -19.33 13.40 -4.15 -0.06 -19.38 16 17 C -0.13 -2.41 6.06 -18.63 -0.11 -2.52 16 18 C 0.03 0.11 9.63 22.81 0.22 0.33 16 19 C -0.11 0.35 9.92 21.94 0.22 0.56 16 20 C 0.13 0.38 11.15 83.41 0.93 1.31 16 21 N -0.31 -5.31 3.94 -188.67 -0.74 -6.05 16 22 N -0.12 -2.88 13.99 37.02 0.52 -2.36 16 23 N -0.04 -1.16 13.36 37.02 0.49 -0.66 16 24 N -0.34 -11.43 11.75 -52.04 -0.61 -12.04 16 25 C 0.26 6.29 7.85 135.76 1.07 7.36 16 26 N -0.33 -14.51 12.42 -54.48 -0.68 -15.19 16 27 H 0.26 14.82 7.22 -92.71 -0.67 14.15 16 28 H 0.05 2.48 7.94 -2.39 -0.02 2.46 16 29 H 0.02 1.00 8.00 -2.39 -0.02 0.98 16 30 H 0.20 6.19 8.06 -2.91 -0.02 6.17 16 31 H 0.16 6.39 5.91 -2.91 -0.02 6.37 16 32 H 0.43 6.96 6.93 -92.71 -0.64 6.32 16 33 H 0.20 -0.75 6.49 -2.91 -0.02 -0.77 16 34 H 0.24 -3.43 8.06 -2.91 -0.02 -3.45 16 35 H 0.23 -1.37 8.06 -2.91 -0.02 -1.39 16 Total: -1.00 -90.83 319.03 5.36 -85.47 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: 0.64 Total: 2.05 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 6.41 Total: 5.18 kcal Atomic # 7 Polarization: -119.72 SS G_CDS: -3.69 Total: -123.42 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.06 Total: -19.38 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.05 Total: 50.11 kcal Total: -90.83 5.36 -85.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147440450.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 268.198 kcal (2) G-P(sol) polarization free energy of solvation -90.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 182.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds