Wall clock time and date at job start Fri Apr 10 2020 18:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 S 1.81401 * 109.46744 * 220.22836 * 3 2 1 5 5 C 1.81392 * 102.99998 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47373 * 179.97438 * 5 4 3 7 7 O 1.21280 * 119.99770 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00289 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99857 * 180.02562 * 8 6 5 10 10 C 1.53007 * 109.46801 * 180.02562 * 9 8 6 11 11 H 1.09000 * 109.46513 * 304.98902 * 10 9 8 12 12 C 1.54809 * 109.46648 * 185.00188 * 10 9 8 13 13 N 1.45120 * 109.52656 * 172.10500 * 12 10 9 14 14 C 1.36939 * 118.75032 * 269.28603 * 13 12 10 15 15 H 1.07999 * 120.00053 * 28.11056 * 14 13 12 16 16 C 1.38812 * 119.99707 * 208.10663 * 14 13 12 17 17 N 1.31619 * 120.00224 * 26.08930 * 16 14 13 18 18 Si 1.86800 * 119.99878 * 206.08813 * 16 14 13 19 19 H 1.48502 * 109.47258 * 180.02562 * 18 16 14 20 20 H 1.48504 * 109.47084 * 299.99839 * 18 16 14 21 21 H 1.48496 * 109.47432 * 59.99834 * 18 16 14 22 22 C 1.47503 * 122.48889 * 89.56732 * 13 12 10 23 23 C 1.53944 * 110.82204 * 317.97528 * 22 13 12 24 24 C 1.51545 * 109.72361 * 320.30284 * 23 22 13 25 25 O 1.38007 * 109.47461 * 64.98368 * 10 9 8 26 26 H 1.09002 * 109.46889 * 100.23742 * 3 2 1 27 27 H 1.08994 * 109.47268 * 340.22709 * 3 2 1 28 28 H 1.09003 * 109.46893 * 60.00586 * 5 4 3 29 29 H 1.08998 * 109.47701 * 300.00049 * 5 4 3 30 30 H 0.97000 * 119.99620 * 0.02562 * 8 6 5 31 31 H 1.08991 * 109.47494 * 60.00360 * 9 8 6 32 32 H 1.08997 * 109.47008 * 299.99887 * 9 8 6 33 33 H 1.09001 * 109.46303 * 52.07906 * 12 10 9 34 34 H 1.09003 * 109.44767 * 292.10991 * 12 10 9 35 35 H 0.97002 * 119.99624 * 5.67864 * 17 16 14 36 36 H 1.08998 * 109.16755 * 78.49351 * 22 13 12 37 37 H 1.08998 * 109.16497 * 197.69306 * 22 13 12 38 38 H 1.09000 * 109.46207 * 200.18203 * 23 22 13 39 39 H 1.08993 * 109.30001 * 80.33078 * 23 22 13 40 40 H 1.08992 * 109.58649 * 331.51348 * 24 23 22 41 41 H 1.08996 * 109.58908 * 211.07700 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 16 3.2120 1.3067 1.1046 5 6 5.0144 1.1520 0.9720 6 6 5.6732 2.1874 1.8467 7 8 4.9936 2.9539 2.4960 8 7 7.0175 2.2610 1.9082 9 6 7.6579 3.2672 2.7590 10 6 9.1782 3.1368 2.6471 11 1 9.4736 2.1149 2.8850 12 6 9.8543 4.1137 3.6397 13 7 11.2831 3.8618 3.6709 14 6 11.7743 2.9662 4.5830 15 1 11.1529 2.1547 4.9316 16 6 13.0711 3.1016 5.0595 17 7 13.6464 4.2853 5.0748 18 14 13.9995 1.6038 5.6791 19 1 15.3538 2.0127 6.1307 20 1 13.2607 0.9989 6.8165 21 1 14.1219 0.6090 4.5834 22 6 12.2270 4.5383 2.7614 23 6 11.6540 4.6125 1.3345 24 6 10.9424 3.3167 1.0011 25 8 9.5727 3.4418 1.3602 26 1 2.9712 0.1835 -1.0113 27 1 2.9718 -0.9662 0.3476 28 1 5.3171 1.3063 -0.0637 29 1 5.3185 0.1564 1.2950 30 1 7.5610 1.6477 1.3892 31 1 7.3550 3.1134 3.7946 32 1 7.3542 4.2628 2.4356 33 1 9.4374 3.9655 4.6359 34 1 9.6734 5.1397 3.3192 35 1 13.1381 5.0747 4.8312 36 1 12.4161 5.5473 3.1279 37 1 13.1652 3.9838 2.7422 38 1 12.4658 4.7736 0.6251 39 1 10.9482 5.4407 1.2723 40 1 11.3936 2.4976 1.5609 41 1 11.0234 3.1199 -0.0679 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149235906.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:14 Heat of formation + Delta-G solvation = -26.530782 kcal Electronic energy + Delta-G solvation = -23352.918920 eV Core-core repulsion = 19781.375304 eV Total energy + Delta-G solvation = -3571.543616 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 3.38 seconds Orbital eigenvalues (eV) -39.88791 -38.93309 -37.09188 -35.60506 -34.82589 -32.46680 -31.58931 -30.98858 -30.35016 -28.18917 -25.85842 -25.01872 -22.83601 -21.08137 -20.75281 -19.65881 -18.78970 -17.61058 -17.20713 -16.75460 -16.44696 -16.12733 -15.91260 -15.43711 -15.29166 -14.76319 -14.56864 -14.25762 -13.81686 -13.62319 -13.57496 -13.25345 -13.08080 -12.82373 -12.53839 -12.47971 -12.36001 -12.25137 -11.76016 -11.21808 -11.12657 -10.84218 -10.51152 -10.50379 -10.32255 -10.15109 -10.07210 -9.98718 -9.42634 -9.15049 -9.04218 -8.39959 -8.16199 -7.02197 -6.17795 -3.38714 0.55195 1.80669 2.24916 2.41970 2.62438 3.05211 3.29313 3.41790 3.43471 3.62352 3.98515 4.41578 4.45436 4.49674 4.56481 4.61549 4.78808 4.97701 5.28182 5.35130 5.43603 5.50947 5.65936 5.82067 5.85288 5.96635 6.06123 6.12792 6.31092 6.40002 6.47244 6.49566 6.62804 6.89678 6.98772 7.04634 7.33661 7.91524 8.00939 8.04832 8.47194 9.02257 9.72589 10.10339 11.08422 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.025376 B = 0.002386 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.153594 B =11733.016851 C =12179.386362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C 0.222 3.778 3 C -0.026 4.026 4 S -0.134 6.134 5 C -0.133 4.133 6 C 0.527 3.473 7 O -0.524 6.524 8 N -0.713 5.713 9 C 0.134 3.866 10 C 0.068 3.932 11 H 0.054 0.946 12 C 0.129 3.871 13 N -0.596 5.596 14 C -0.367 4.367 15 H 0.056 0.944 16 C -0.017 4.017 17 N -0.909 5.909 18 Si 1.061 2.939 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.293 1.293 22 C 0.154 3.846 23 C -0.170 4.170 24 C 0.088 3.912 25 O -0.395 6.395 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.404 0.596 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.042 0.958 35 H 0.270 0.730 36 H 0.021 0.979 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.981 -8.323 -12.575 19.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.086 5.086 2 C -0.097 4.097 3 C -0.177 4.177 4 S 0.091 5.909 5 C -0.284 4.284 6 C 0.310 3.690 7 O -0.401 6.401 8 N -0.365 5.365 9 C 0.010 3.990 10 C 0.006 3.994 11 H 0.071 0.929 12 C 0.000 4.000 13 N -0.318 5.318 14 C -0.496 4.496 15 H 0.074 0.926 16 C -0.221 4.221 17 N -0.548 5.548 18 Si 0.891 3.109 19 H -0.211 1.211 20 H -0.219 1.219 21 H -0.220 1.220 22 C 0.029 3.971 23 C -0.210 4.210 24 C 0.012 3.988 25 O -0.315 6.315 26 H 0.146 0.854 27 H 0.146 0.854 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.239 0.761 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.039 0.961 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.357 -7.496 -11.017 18.867 hybrid contribution 0.342 -0.744 -1.365 1.591 sum -13.015 -8.240 -12.382 19.763 Atomic orbital electron populations 1.81283 1.12131 1.07500 1.07653 1.27749 0.93746 0.94131 0.94067 1.20826 0.86171 1.04784 1.05906 1.88117 1.01598 1.42738 1.58484 1.23597 0.96127 1.03728 1.04971 1.19505 0.82724 0.84396 0.82338 1.90776 1.62951 1.42262 1.44075 1.45860 1.05606 1.37142 1.47851 1.21472 0.90846 0.92022 0.94685 1.22589 0.91292 1.00093 0.85408 0.92856 1.21409 0.85965 0.95614 0.97020 1.43870 1.00440 1.49915 1.37571 1.19944 1.01137 1.06103 1.22390 0.92618 1.25857 0.96682 1.02058 0.97454 1.70799 1.41328 0.98126 1.44576 0.83583 0.76493 0.74831 0.76020 1.21053 1.21871 1.22033 1.21258 0.93343 0.96152 0.86396 1.22703 1.00095 0.98667 0.99488 1.21999 0.80820 0.97817 0.98153 1.86070 1.26748 1.89094 1.29562 0.85400 0.85392 0.86450 0.86470 0.76123 0.89955 0.90745 0.92418 0.94010 0.91856 0.96060 0.91291 0.91792 0.92054 0.91881 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.54 18.54 42.15 0.78 -3.76 16 2 C 0.22 1.75 15.44 -20.76 -0.32 1.42 16 3 C -0.03 -0.10 6.42 34.37 0.22 0.12 16 4 S -0.13 -1.11 20.83 -107.50 -2.24 -3.35 16 5 C -0.13 -0.84 6.42 36.01 0.23 -0.61 16 6 C 0.53 5.93 7.85 -10.98 -0.09 5.84 16 7 O -0.52 -8.26 15.86 5.56 0.09 -8.17 16 8 N -0.71 -7.80 5.49 -60.29 -0.33 -8.14 16 9 C 0.13 1.83 5.34 -4.04 -0.02 1.81 16 10 C 0.07 1.09 2.68 -25.77 -0.07 1.02 16 11 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 12 C 0.13 2.51 5.12 -3.83 -0.02 2.49 16 13 N -0.60 -13.69 2.06 -171.80 -0.35 -14.04 16 14 C -0.37 -9.49 9.32 -15.06 -0.14 -9.63 16 15 H 0.06 1.45 7.95 -52.49 -0.42 1.03 16 16 C -0.02 -0.46 4.57 -17.43 -0.08 -0.54 16 17 N -0.91 -26.04 12.60 55.49 0.70 -25.34 16 18 Si 1.06 23.92 29.99 -169.99 -5.10 18.83 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 22 C 0.15 3.35 4.60 -3.00 -0.01 3.34 16 23 C -0.17 -2.93 5.79 -26.97 -0.16 -3.08 16 24 C 0.09 1.41 6.38 36.42 0.23 1.64 16 25 O -0.40 -6.28 9.38 -26.51 -0.25 -6.53 16 26 H 0.13 0.14 8.14 -51.92 -0.42 -0.28 16 27 H 0.13 0.15 8.14 -51.93 -0.42 -0.28 16 28 H 0.12 0.44 8.14 -51.92 -0.42 0.01 16 29 H 0.12 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.40 3.54 8.46 -40.82 -0.35 3.19 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.15 7.98 -51.93 -0.41 0.73 16 34 H 0.04 0.80 8.11 -51.93 -0.42 0.38 16 35 H 0.27 7.82 6.40 -40.82 -0.26 7.56 16 36 H 0.02 0.50 7.17 -51.93 -0.37 0.13 16 37 H 0.07 1.67 6.80 -51.93 -0.35 1.32 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 1.05 8.01 -51.93 -0.42 0.64 16 40 H 0.06 1.14 7.41 -51.93 -0.38 0.76 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 357.57 15.07 5.39 5.39 Total: -1.00 -33.65 357.57 -7.52 -41.17 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.99 Total: 0.12 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -0.22 Total: 3.82 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: 0.80 Total: -51.28 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.16 Total: -14.70 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.10 Total: 18.83 kcal Atomic # 16 Polarization: -1.11 SS G_CDS: -2.24 Total: -3.35 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.65 -7.52 -41.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149235906.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.640 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.38 seconds