Wall clock time and date at job start Fri Apr 10 2020 18:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 S 1.81401 * 109.47177 * 120.26973 * 3 2 1 5 5 C 1.81404 * 103.00016 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46914 * 179.97438 * 5 4 3 7 7 O 1.21278 * 120.00075 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99792 * 180.02562 * 6 5 4 9 9 C 1.46491 * 119.99985 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47468 * 179.97438 * 9 8 6 11 11 H 1.09001 * 108.57076 * 59.99713 * 10 9 8 12 12 C 1.46915 * 108.51212 * 177.88147 * 10 9 8 13 13 N 1.50119 * 106.77840 * 177.84265 * 12 10 9 14 14 C 1.36938 * 120.63857 * 111.31985 * 13 12 10 15 15 H 1.08004 * 119.99745 * 155.71519 * 14 13 12 16 16 C 1.38807 * 120.00043 * 335.72125 * 14 13 12 17 17 N 1.31622 * 119.99912 * 340.60506 * 16 14 13 18 18 Si 1.86804 * 120.00000 * 160.60757 * 16 14 13 19 19 H 1.48501 * 109.46866 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47048 * 120.00034 * 18 16 14 21 21 H 1.48497 * 109.47006 * 239.99960 * 18 16 14 22 22 C 1.43424 * 118.72555 * 291.34204 * 13 12 10 23 23 C 1.55334 * 116.23691 * 89.35509 * 22 13 12 24 24 C 1.55183 * 108.87340 * 319.46381 * 23 22 13 25 25 O 1.39637 * 110.57309 * 322.14488 * 24 23 22 26 26 H 1.08997 * 109.47429 * 0.26382 * 3 2 1 27 27 H 1.09002 * 109.46492 * 240.26330 * 3 2 1 28 28 H 1.09001 * 109.46958 * 59.99660 * 5 4 3 29 29 H 1.08998 * 109.46699 * 299.99741 * 5 4 3 30 30 H 0.97001 * 119.99976 * 359.97438 * 8 6 5 31 31 H 1.09004 * 109.47605 * 59.99260 * 9 8 6 32 32 H 1.09007 * 109.47282 * 299.99571 * 9 8 6 33 33 H 1.08999 * 109.99394 * 297.15407 * 12 10 9 34 34 H 1.08997 * 109.99383 * 58.52319 * 12 10 9 35 35 H 0.96996 * 119.99733 * 180.02562 * 17 16 14 36 36 H 1.09002 * 108.13233 * 327.59904 * 22 13 12 37 37 H 1.08998 * 107.96922 * 210.98479 * 22 13 12 38 38 H 1.09000 * 109.56734 * 199.64524 * 23 22 13 39 39 H 1.09000 * 109.56987 * 79.28934 * 23 22 13 40 40 H 1.09003 * 109.25823 * 201.85979 * 24 23 22 41 41 H 1.09006 * 109.25805 * 82.42775 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 16 3.2123 0.8630 -1.4771 5 6 5.0148 0.7614 -1.3001 6 6 5.6737 1.4444 -2.4708 7 8 4.9943 1.9494 -3.3392 8 7 7.0181 1.4930 -2.5532 9 6 7.6587 2.1573 -3.6909 10 6 9.1789 2.0716 -3.5418 11 1 9.4664 1.0205 -3.5154 12 6 9.7990 2.6982 -4.7171 13 7 11.2842 2.6407 -4.5058 14 6 12.0693 1.8344 -5.2860 15 1 13.1165 2.0640 -5.4171 16 6 11.5193 0.7223 -5.9083 17 7 10.3849 0.2175 -5.4716 18 14 12.3892 -0.0582 -7.3656 19 1 13.6364 0.6930 -7.6579 20 1 12.7241 -1.4689 -7.0447 21 1 11.4984 -0.0188 -8.5530 22 6 11.8649 3.4462 -3.4709 23 6 11.9593 2.7937 -2.0644 24 6 10.6560 1.9965 -1.7924 25 8 9.5493 2.6752 -2.3066 26 1 2.9718 -1.0268 -0.0047 27 1 2.9710 0.5106 0.8924 28 1 5.3187 -0.2850 -1.2721 29 1 5.3172 1.2525 -0.3752 30 1 7.5615 1.0887 -1.8588 31 1 7.3551 3.2038 -3.7187 32 1 7.3558 1.6665 -4.6159 33 1 9.5294 2.1480 -5.6185 34 1 9.4744 3.7353 -4.8012 35 1 10.0007 -0.5599 -5.9062 36 1 11.2771 4.3598 -3.3821 37 1 12.8715 3.7225 -3.7848 38 1 12.0768 3.5704 -1.3088 39 1 12.8142 2.1182 -2.0320 40 1 10.5311 1.8678 -0.7172 41 1 10.7285 1.0169 -2.2649 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149235907.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:19 Heat of formation + Delta-G solvation = -16.425789 kcal Electronic energy + Delta-G solvation = -23797.242667 eV Core-core repulsion = 20226.137236 eV Total energy + Delta-G solvation = -3571.105431 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 5.09 seconds Orbital eigenvalues (eV) -39.71070 -38.77460 -37.00401 -35.09335 -34.62742 -32.34709 -31.43563 -30.78530 -30.05074 -28.45176 -25.45153 -25.23072 -22.65922 -20.90855 -20.47024 -19.66057 -18.64919 -17.21990 -16.94231 -16.55793 -16.19171 -15.80678 -15.62086 -15.17194 -15.02535 -14.51379 -14.40488 -14.15437 -13.89254 -13.46925 -13.28456 -13.09700 -13.01951 -12.57087 -12.42444 -12.36024 -12.16340 -11.97159 -11.46741 -11.28302 -10.91269 -10.80306 -10.51429 -10.37521 -10.22050 -10.05150 -9.91755 -9.73113 -9.56687 -8.89376 -8.82083 -8.56755 -8.03027 -6.87997 -5.98156 -3.36314 0.68172 1.94662 2.33418 2.64905 2.71830 3.29072 3.31220 3.38859 3.39422 3.40391 4.38860 4.51740 4.57903 4.70817 4.72584 4.73883 4.96496 5.17344 5.22822 5.63648 5.75081 5.84998 5.91954 6.06466 6.25407 6.33736 6.39241 6.45936 6.60246 6.63068 6.74820 6.82562 6.89875 7.04872 7.07308 7.26429 7.61031 7.67465 8.04993 8.26260 8.28062 9.01577 9.69709 10.23627 11.11088 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.020508 B = 0.002802 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.017892 B = 9989.491157 C =10806.722109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C 0.223 3.777 3 C -0.028 4.028 4 S -0.134 6.134 5 C -0.132 4.132 6 C 0.525 3.475 7 O -0.528 6.528 8 N -0.707 5.707 9 C 0.122 3.878 10 C 0.061 3.939 11 H 0.108 0.892 12 C 0.142 3.858 13 N -0.587 5.587 14 C -0.248 4.248 15 H 0.070 0.930 16 C 0.002 3.998 17 N -0.908 5.908 18 Si 0.904 3.096 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.288 1.288 22 C 0.160 3.840 23 C -0.172 4.172 24 C 0.067 3.933 25 O -0.370 6.370 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.402 0.598 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.020 0.980 35 H 0.255 0.745 36 H 0.032 0.968 37 H 0.033 0.967 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.208 -1.159 12.349 13.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.095 4.095 3 C -0.178 4.178 4 S 0.090 5.910 5 C -0.283 4.283 6 C 0.308 3.692 7 O -0.405 6.405 8 N -0.357 5.357 9 C -0.002 4.002 10 C 0.002 3.998 11 H 0.125 0.875 12 C 0.017 3.983 13 N -0.308 5.308 14 C -0.377 4.377 15 H 0.088 0.912 16 C -0.196 4.196 17 N -0.554 5.554 18 Si 0.734 3.266 19 H -0.204 1.204 20 H -0.219 1.219 21 H -0.215 1.215 22 C 0.031 3.969 23 C -0.213 4.213 24 C -0.011 4.011 25 O -0.288 6.288 26 H 0.146 0.854 27 H 0.145 0.855 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.236 0.764 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.122 0.878 34 H 0.038 0.962 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.116 -0.280 10.889 14.204 hybrid contribution 2.179 -1.563 0.660 2.762 sum -6.937 -1.843 11.549 13.598 Atomic orbital electron populations 1.81273 1.12148 1.07908 1.07470 1.27765 0.93764 0.93916 0.94099 1.20830 0.86117 1.07056 1.03795 1.88097 1.01914 1.73895 1.27084 1.23613 0.95866 1.06123 1.02739 1.19470 0.82899 0.80462 0.86328 1.90759 1.62995 1.46367 1.40339 1.45805 1.05370 1.57850 1.26724 1.21772 0.92869 0.97236 0.88359 1.22212 0.90484 1.00817 0.86273 0.87466 1.20755 0.83228 0.96416 0.97890 1.44120 1.02761 1.49854 1.34041 1.19307 0.93701 1.02988 1.21695 0.91243 1.24893 0.97963 0.96028 1.00710 1.69862 1.21098 1.23722 1.40673 0.86200 0.79004 0.78620 0.82790 1.20383 1.21850 1.21497 1.20383 0.96595 0.92965 0.86928 1.23581 0.97596 0.99834 1.00336 1.22344 0.86503 0.95920 0.96297 1.87512 1.46672 1.58245 1.36399 0.85428 0.85453 0.86550 0.86584 0.76401 0.91771 0.90128 0.87765 0.96190 0.93512 0.94981 0.94870 0.93169 0.92484 0.93101 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.91 18.54 42.15 0.78 -4.12 16 2 C 0.22 1.97 15.44 -20.76 -0.32 1.65 16 3 C -0.03 -0.14 6.42 34.37 0.22 0.08 16 4 S -0.13 -1.30 20.83 -107.50 -2.24 -3.54 16 5 C -0.13 -1.07 6.42 36.01 0.23 -0.84 16 6 C 0.53 7.07 7.85 -10.98 -0.09 6.98 16 7 O -0.53 -9.41 15.86 5.56 0.09 -9.33 16 8 N -0.71 -9.61 5.41 -60.30 -0.33 -9.94 16 9 C 0.12 2.05 5.24 -4.05 -0.02 2.03 16 10 C 0.06 1.14 1.98 -29.65 -0.06 1.08 16 11 H 0.11 2.27 5.24 -51.93 -0.27 1.99 16 12 C 0.14 3.06 4.70 -4.93 -0.02 3.03 16 13 N -0.59 -13.47 2.61 -174.50 -0.46 -13.93 16 14 C -0.25 -6.22 9.61 -15.06 -0.14 -6.37 16 15 H 0.07 1.76 7.88 -52.48 -0.41 1.35 16 16 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 17 N -0.91 -22.73 9.57 55.49 0.53 -22.20 16 18 Si 0.90 20.31 29.60 -169.99 -5.03 15.28 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.16 3.23 5.33 -4.43 -0.02 3.20 16 23 C -0.17 -3.02 6.75 -24.34 -0.16 -3.18 16 24 C 0.07 1.15 6.38 38.31 0.24 1.39 16 25 O -0.37 -6.60 9.44 -31.93 -0.30 -6.90 16 26 H 0.13 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.13 0.28 8.14 -51.92 -0.42 -0.14 16 28 H 0.12 0.65 8.14 -51.92 -0.42 0.22 16 29 H 0.12 0.62 8.14 -51.92 -0.42 0.20 16 30 H 0.40 4.62 8.26 -40.82 -0.34 4.28 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.10 2.48 6.03 -51.93 -0.31 2.17 16 34 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.25 6.31 8.31 -40.82 -0.34 5.97 16 36 H 0.03 0.63 7.99 -51.93 -0.41 0.22 16 37 H 0.03 0.66 7.95 -51.93 -0.41 0.25 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 1.22 6.66 -51.93 -0.35 0.88 16 LS Contribution 353.98 15.07 5.33 5.33 Total: -1.00 -30.66 353.98 -7.72 -38.38 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.87 Total: 1.96 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -0.23 Total: 9.01 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.53 Total: -50.19 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.21 Total: -16.23 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Atomic # 16 Polarization: -1.30 SS G_CDS: -2.24 Total: -3.54 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.66 -7.72 -38.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149235907.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.953 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.09 seconds