Wall clock time and date at job start Fri Apr 10 2020 18:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 S 1.81401 * 109.47177 * 120.26973 * 3 2 1 5 5 C 1.81404 * 103.00016 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46914 * 179.97438 * 5 4 3 7 7 O 1.21278 * 120.00075 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99792 * 180.02562 * 6 5 4 9 9 C 1.46491 * 119.99985 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47468 * 179.97438 * 9 8 6 11 11 H 1.09001 * 108.57076 * 59.99713 * 10 9 8 12 12 C 1.46915 * 108.51212 * 177.88147 * 10 9 8 13 13 N 1.50119 * 106.77840 * 177.84265 * 12 10 9 14 14 C 1.36938 * 120.63857 * 111.31985 * 13 12 10 15 15 H 1.08004 * 119.99745 * 155.71519 * 14 13 12 16 16 C 1.38807 * 120.00043 * 335.72125 * 14 13 12 17 17 N 1.31622 * 119.99912 * 340.60506 * 16 14 13 18 18 Si 1.86804 * 120.00000 * 160.60757 * 16 14 13 19 19 H 1.48501 * 109.46866 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47048 * 120.00034 * 18 16 14 21 21 H 1.48497 * 109.47006 * 239.99960 * 18 16 14 22 22 C 1.43424 * 118.72555 * 291.34204 * 13 12 10 23 23 C 1.55334 * 116.23691 * 89.35509 * 22 13 12 24 24 C 1.55183 * 108.87340 * 319.46381 * 23 22 13 25 25 O 1.39637 * 110.57309 * 322.14488 * 24 23 22 26 26 H 1.08997 * 109.47429 * 0.26382 * 3 2 1 27 27 H 1.09002 * 109.46492 * 240.26330 * 3 2 1 28 28 H 1.09001 * 109.46958 * 59.99660 * 5 4 3 29 29 H 1.08998 * 109.46699 * 299.99741 * 5 4 3 30 30 H 0.97001 * 119.99976 * 359.97438 * 8 6 5 31 31 H 1.09004 * 109.47605 * 59.99260 * 9 8 6 32 32 H 1.09007 * 109.47282 * 299.99571 * 9 8 6 33 33 H 1.08999 * 109.99394 * 297.15407 * 12 10 9 34 34 H 1.08997 * 109.99383 * 58.52319 * 12 10 9 35 35 H 0.96996 * 119.99733 * 180.02562 * 17 16 14 36 36 H 1.09002 * 108.13233 * 327.59904 * 22 13 12 37 37 H 1.08998 * 107.96922 * 210.98479 * 22 13 12 38 38 H 1.09000 * 109.56734 * 199.64524 * 23 22 13 39 39 H 1.09000 * 109.56987 * 79.28934 * 23 22 13 40 40 H 1.09003 * 109.25823 * 201.85979 * 24 23 22 41 41 H 1.09006 * 109.25805 * 82.42775 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 16 3.2123 0.8630 -1.4771 5 6 5.0148 0.7614 -1.3001 6 6 5.6737 1.4444 -2.4708 7 8 4.9943 1.9494 -3.3392 8 7 7.0181 1.4930 -2.5532 9 6 7.6587 2.1573 -3.6909 10 6 9.1789 2.0716 -3.5418 11 1 9.4664 1.0205 -3.5154 12 6 9.7990 2.6982 -4.7171 13 7 11.2842 2.6407 -4.5058 14 6 12.0693 1.8344 -5.2860 15 1 13.1165 2.0640 -5.4171 16 6 11.5193 0.7223 -5.9083 17 7 10.3849 0.2175 -5.4716 18 14 12.3892 -0.0582 -7.3656 19 1 13.6364 0.6930 -7.6579 20 1 12.7241 -1.4689 -7.0447 21 1 11.4984 -0.0188 -8.5530 22 6 11.8649 3.4462 -3.4709 23 6 11.9593 2.7937 -2.0644 24 6 10.6560 1.9965 -1.7924 25 8 9.5493 2.6752 -2.3066 26 1 2.9718 -1.0268 -0.0047 27 1 2.9710 0.5106 0.8924 28 1 5.3187 -0.2850 -1.2721 29 1 5.3172 1.2525 -0.3752 30 1 7.5615 1.0887 -1.8588 31 1 7.3551 3.2038 -3.7187 32 1 7.3558 1.6665 -4.6159 33 1 9.5294 2.1480 -5.6185 34 1 9.4744 3.7353 -4.8012 35 1 10.0007 -0.5599 -5.9062 36 1 11.2771 4.3598 -3.3821 37 1 12.8715 3.7225 -3.7848 38 1 12.0768 3.5704 -1.3088 39 1 12.8142 2.1182 -2.0320 40 1 10.5311 1.8678 -0.7172 41 1 10.7285 1.0169 -2.2649 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149235907.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:18 Heat of formation + Delta-G solvation = -37.112478 kcal Electronic energy + Delta-G solvation = -23798.139709 eV Core-core repulsion = 20226.137236 eV Total energy + Delta-G solvation = -3572.002473 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.00147 -40.11554 -37.74055 -36.77212 -35.92922 -33.85718 -33.04776 -31.47286 -30.92511 -29.88627 -27.03300 -26.80750 -24.22305 -22.36549 -21.62936 -21.25807 -19.43673 -18.89379 -17.94575 -17.68925 -17.31483 -16.81368 -16.67980 -16.55144 -16.14760 -15.81338 -15.57075 -15.50666 -15.11316 -14.84017 -14.45922 -14.31392 -14.08593 -13.85963 -13.62042 -13.45214 -13.26464 -13.03672 -12.96655 -12.86115 -12.61480 -12.46958 -12.24893 -11.90733 -11.73689 -11.34539 -11.16077 -11.05100 -10.93241 -10.53830 -10.23766 -10.05449 -8.71601 -8.69284 -7.88224 -5.27854 0.06020 1.35272 1.47614 1.53659 1.60258 1.63981 1.70116 2.09448 2.31589 2.53805 2.85636 3.15648 3.29478 3.53469 3.79566 4.20334 4.22410 4.27714 4.31652 4.41308 4.42182 4.46555 4.47189 4.60704 4.77321 4.82451 4.84366 5.01073 5.11738 5.22026 5.23264 5.38206 5.43257 5.46927 5.54517 5.70965 6.38562 6.44399 6.55823 6.58073 7.13212 7.26101 7.85436 8.37945 9.17751 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.020508 B = 0.002802 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.017892 B = 9989.491157 C =10806.722109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.246 3.754 3 C -0.003 4.003 4 S -0.222 6.222 5 C -0.106 4.106 6 C 0.519 3.481 7 O -0.578 6.578 8 N -0.700 5.700 9 C 0.135 3.865 10 C 0.081 3.919 11 H 0.087 0.913 12 C 0.142 3.858 13 N -0.601 5.601 14 C -0.261 4.261 15 H 0.061 0.939 16 C -0.035 4.035 17 N -0.915 5.915 18 Si 0.956 3.044 19 H -0.277 1.277 20 H -0.293 1.293 21 H -0.294 1.294 22 C 0.153 3.847 23 C -0.166 4.166 24 C 0.068 3.932 25 O -0.365 6.365 26 H 0.166 0.834 27 H 0.168 0.832 28 H 0.152 0.848 29 H 0.155 0.845 30 H 0.415 0.585 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.022 0.978 35 H 0.251 0.749 36 H 0.034 0.966 37 H 0.028 0.972 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.091 0.909 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.520 -1.846 15.054 16.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.155 5.155 2 C -0.071 4.071 3 C -0.153 4.153 4 S 0.002 5.998 5 C -0.257 4.257 6 C 0.305 3.695 7 O -0.458 6.458 8 N -0.352 5.352 9 C 0.009 3.991 10 C 0.022 3.978 11 H 0.105 0.895 12 C 0.017 3.983 13 N -0.323 5.323 14 C -0.391 4.391 15 H 0.079 0.921 16 C -0.232 4.232 17 N -0.560 5.560 18 Si 0.786 3.214 19 H -0.202 1.202 20 H -0.220 1.220 21 H -0.221 1.221 22 C 0.025 3.975 23 C -0.207 4.207 24 C -0.009 4.009 25 O -0.283 6.283 26 H 0.184 0.816 27 H 0.185 0.815 28 H 0.169 0.831 29 H 0.173 0.827 30 H 0.252 0.748 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.040 0.960 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.046 0.954 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.109 0.891 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.407 -0.968 13.638 16.051 hybrid contribution 2.017 -1.293 -0.180 2.402 sum -6.390 -2.261 13.459 15.069 Atomic orbital electron populations 1.81295 1.14366 1.10242 1.09557 1.28466 0.94560 0.91921 0.92188 1.21064 0.83088 1.08945 1.02192 1.88484 1.04622 1.75500 1.31171 1.23497 0.93251 1.07784 1.01154 1.20378 0.82295 0.79623 0.87208 1.90747 1.63951 1.48459 1.42650 1.45651 1.05908 1.57613 1.26004 1.21341 0.91802 0.96917 0.89026 1.21721 0.91270 0.99063 0.85734 0.89487 1.20693 0.83083 0.96271 0.98218 1.44224 1.03119 1.49912 1.35033 1.19406 0.93700 1.03351 1.22658 0.92094 1.25423 0.98808 0.96629 1.02303 1.69975 1.21584 1.23616 1.40870 0.85391 0.78047 0.77665 0.80309 1.20195 1.21982 1.22135 1.20499 0.96124 0.92891 0.87942 1.23500 0.97828 1.00423 0.98940 1.22405 0.85958 0.94339 0.98226 1.87514 1.46958 1.58315 1.35539 0.81633 0.81456 0.83064 0.82729 0.74837 0.92558 0.92202 0.90482 0.95958 0.93962 0.94744 0.95375 0.90364 0.92848 0.89093 0.94406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.21 18.54 20.00 0.37 -10.84 16 2 C 0.25 3.87 15.44 89.44 1.38 5.25 16 3 C 0.00 -0.02 6.42 70.18 0.45 0.43 16 4 S -0.22 -3.84 20.83 -56.49 -1.18 -5.01 16 5 C -0.11 -1.32 6.42 71.24 0.46 -0.86 16 6 C 0.52 13.12 7.85 87.66 0.69 13.81 16 7 O -0.58 -20.74 15.86 -3.02 -0.05 -20.79 16 8 N -0.70 -17.94 5.41 -463.07 -2.51 -20.44 16 9 C 0.13 4.55 5.24 86.38 0.45 5.01 16 10 C 0.08 3.03 1.98 28.71 0.06 3.08 16 11 H 0.09 3.69 5.24 -2.39 -0.01 3.67 16 12 C 0.14 6.22 4.70 83.78 0.39 6.62 16 13 N -0.60 -27.76 2.61 -705.99 -1.84 -29.61 16 14 C -0.26 -13.28 9.61 84.03 0.81 -12.47 16 15 H 0.06 3.13 7.88 -2.91 -0.02 3.11 16 16 C -0.04 -1.78 4.92 84.86 0.42 -1.36 16 17 N -0.91 -46.45 9.57 21.65 0.21 -46.25 16 18 Si 0.96 42.14 29.60 68.60 2.03 44.17 16 19 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 22 C 0.15 6.05 5.33 87.75 0.47 6.52 16 23 C -0.17 -5.43 6.75 32.14 0.22 -5.22 16 24 C 0.07 2.16 6.38 72.73 0.46 2.62 16 25 O -0.36 -12.30 9.44 -137.16 -1.30 -13.60 16 26 H 0.17 -0.15 8.14 -2.39 -0.02 -0.17 16 27 H 0.17 -0.22 8.14 -2.39 -0.02 -0.24 16 28 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.15 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.41 8.38 8.26 -92.71 -0.77 7.62 16 31 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 33 H 0.08 3.80 6.03 -2.39 -0.01 3.79 16 34 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.25 12.58 8.31 -92.71 -0.77 11.81 16 36 H 0.03 1.32 7.99 -2.39 -0.02 1.30 16 37 H 0.03 1.11 7.95 -2.39 -0.02 1.09 16 38 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.04 1.41 6.66 -2.38 -0.02 1.39 16 Total: -1.00 -70.95 353.98 2.28 -68.67 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.29 Total: 10.26 kcal Atomic # 6 Polarization: 17.18 SS G_CDS: 6.25 Total: 23.44 kcal Atomic # 7 Polarization: -103.36 SS G_CDS: -3.77 Total: -107.14 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -1.34 Total: -34.39 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: -3.84 SS G_CDS: -1.18 Total: -5.01 kcal Total: -70.95 2.28 -68.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149235907.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.555 kcal (2) G-P(sol) polarization free energy of solvation -70.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds