Wall clock time and date at job start Fri Apr 10 2020 18:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99973 * 2 1 4 4 O 1.20824 * 119.99899 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99892 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.46954 * 180.02562 * 5 3 2 7 7 N 1.46503 * 109.47341 * 179.97438 * 6 5 3 8 8 C 1.37097 * 120.00118 * 263.62295 * 7 6 5 9 9 H 1.08002 * 120.00011 * 142.24912 * 8 7 6 10 10 C 1.38943 * 120.00132 * 322.24913 * 8 7 6 11 11 N 1.31414 * 120.00286 * 157.63783 * 10 8 7 12 12 Si 1.86803 * 120.00043 * 337.64146 * 10 8 7 13 13 H 1.48492 * 109.47525 * 95.70229 * 12 10 8 14 14 H 1.48496 * 109.47291 * 215.70523 * 12 10 8 15 15 H 1.48506 * 109.46729 * 335.70200 * 12 10 8 16 16 C 1.34781 * 119.99868 * 83.62171 * 7 6 5 17 17 O 1.21290 * 119.99696 * 0.02562 * 16 7 6 18 18 C 1.50696 * 120.00066 * 180.02562 * 16 7 6 19 19 C 1.52993 * 109.47546 * 179.97438 * 18 16 7 20 20 H 1.09004 * 110.53362 * 57.82929 * 19 18 16 21 21 N 1.47311 * 110.59866 * 295.00394 * 19 18 16 22 22 C 1.34532 * 106.61905 * 241.31581 * 21 19 18 23 23 O 1.21537 * 123.77248 * 179.97438 * 22 21 19 24 24 N 1.33793 * 112.45379 * 0.26239 * 22 21 19 25 25 C 1.34772 * 111.64721 * 359.54191 * 24 22 21 26 26 O 1.21231 * 127.16212 * 180.14253 * 25 24 22 27 27 H 1.08997 * 109.47173 * 60.00107 * 1 2 3 28 28 H 1.09006 * 109.47090 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.46992 * 299.99511 * 1 2 3 30 30 H 1.09005 * 109.47233 * 60.00291 * 5 3 2 31 31 H 1.09004 * 109.47133 * 299.99887 * 5 3 2 32 32 H 1.09000 * 109.47346 * 59.99857 * 6 5 3 33 33 H 1.08998 * 109.47765 * 299.99792 * 6 5 3 34 34 H 0.97001 * 120.00093 * 180.02562 * 11 10 8 35 35 H 1.09003 * 109.47081 * 59.99242 * 18 16 7 36 36 H 1.09003 * 109.46907 * 299.99907 * 18 16 7 37 37 H 0.97002 * 126.69680 * 61.29451 * 21 19 18 38 38 H 0.96999 * 124.17506 * 179.69113 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7420 0.0002 7 7 5.4631 2.8188 0.0002 8 6 6.1407 2.9858 1.1803 9 1 7.0792 2.4759 1.3409 10 6 5.6202 3.8109 2.1696 11 7 5.9902 3.6511 3.4204 12 14 4.3944 5.1474 1.7217 13 1 3.0135 4.6434 1.9324 14 1 4.6234 6.3371 2.5803 15 1 4.5717 5.5241 0.2962 16 6 6.1428 2.7252 -1.1598 17 8 5.5432 2.5779 -2.2038 18 6 7.6478 2.8035 -1.1598 19 6 8.1655 2.6705 -2.5933 20 1 7.7396 3.4481 -3.2274 21 7 7.8579 1.3350 -3.1336 22 6 9.0375 0.7532 -3.4161 23 8 9.1453 -0.3646 -3.8810 24 7 10.0788 1.5402 -3.1225 25 6 9.6800 2.7272 -2.6243 26 8 10.3856 3.6469 -2.2694 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 3.9557 0.7809 -0.8909 31 1 3.9564 0.7806 0.8892 32 1 3.6107 3.2356 0.8906 33 1 3.6100 3.2368 -0.8893 34 1 5.6265 4.2269 4.1111 35 1 8.0536 1.9958 -0.5507 36 1 7.9616 3.7625 -0.7473 37 1 6.9766 0.9500 -3.2606 38 1 11.0063 1.2884 -3.2540 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152129159.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:33 Heat of formation + Delta-G solvation = -157.544447 kcal Electronic energy + Delta-G solvation = -26531.503419 eV Core-core repulsion = 22375.692658 eV Total energy + Delta-G solvation = -4155.810761 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.24923 -40.31061 -39.11990 -38.52204 -36.50270 -36.12580 -35.31380 -33.82381 -32.48149 -31.48016 -30.18588 -27.73180 -25.81565 -25.05279 -23.68703 -22.59668 -21.32037 -20.57350 -19.33215 -18.29306 -17.72033 -17.19313 -16.70528 -16.58244 -16.47705 -16.30277 -16.18126 -15.67904 -15.27107 -15.09808 -14.71238 -14.23784 -14.02303 -13.83308 -13.59577 -13.30815 -12.78828 -12.62395 -12.57612 -12.47970 -12.04135 -11.85174 -11.46971 -11.17499 -10.97859 -10.92601 -10.72394 -10.36626 -10.35198 -10.29775 -10.22193 -10.05454 -9.46801 -9.32084 -8.90269 -8.12392 -6.69653 -4.33681 1.63089 2.42295 2.52719 2.81434 2.97845 3.06920 3.15038 3.21090 3.26583 3.42528 3.94586 3.99921 4.26502 4.72615 4.88281 5.03213 5.09592 5.11155 5.17592 5.39688 5.42785 5.47605 5.55543 5.77326 5.90873 5.92348 6.03889 6.13961 6.19735 6.38204 6.54624 6.91288 7.02821 7.06747 7.43544 7.81070 7.92548 7.98521 8.24664 8.67535 9.04349 9.35429 10.39443 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.012022 B = 0.004765 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.501914 B = 5874.584223 C = 7598.996370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.511 6.511 5 C -0.123 4.123 6 C 0.115 3.885 7 N -0.452 5.452 8 C -0.362 4.362 9 H 0.109 0.891 10 C 0.075 3.925 11 N -0.846 5.846 12 Si 0.867 3.133 13 H -0.268 1.268 14 H -0.284 1.284 15 H -0.258 1.258 16 C 0.482 3.518 17 O -0.599 6.599 18 C -0.119 4.119 19 C 0.108 3.892 20 H 0.134 0.866 21 N -0.704 5.704 22 C 0.700 3.300 23 O -0.557 6.557 24 N -0.682 5.682 25 C 0.530 3.470 26 O -0.467 6.467 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.279 0.721 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.447 0.553 38 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.296 -4.126 -6.852 8.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.310 3.690 4 O -0.398 6.398 5 C -0.161 4.161 6 C -0.009 4.009 7 N -0.171 5.171 8 C -0.489 4.489 9 H 0.127 0.873 10 C -0.135 4.135 11 N -0.480 5.480 12 Si 0.694 3.306 13 H -0.194 1.194 14 H -0.211 1.211 15 H -0.182 1.182 16 C 0.272 3.728 17 O -0.485 6.485 18 C -0.160 4.160 19 C -0.001 4.001 20 H 0.151 0.849 21 N -0.369 5.369 22 C 0.399 3.601 23 O -0.432 6.432 24 N -0.353 5.353 25 C 0.315 3.685 26 O -0.336 6.336 27 H 0.079 0.921 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.127 0.873 31 H 0.132 0.868 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.137 0.863 37 H 0.294 0.706 38 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -1.484 -3.873 -7.136 8.254 hybrid contribution -0.801 0.521 0.142 0.966 sum -2.286 -3.352 -6.994 8.086 Atomic orbital electron populations 1.23211 0.76980 1.03309 1.02418 1.86535 1.23016 1.33943 1.84381 1.23975 0.92293 0.81057 0.71641 1.90653 1.67379 1.36341 1.45469 1.21780 0.86297 1.01618 1.06434 1.21445 0.82865 0.93360 1.03210 1.43666 1.03826 1.63119 1.06528 1.19085 1.08985 1.29948 0.90837 0.87342 1.25333 0.96918 0.96669 0.94556 1.69758 1.42268 1.36259 0.99670 0.87064 0.81293 0.82141 0.80149 1.19440 1.21050 1.18201 1.20067 0.88928 0.80573 0.83256 1.90552 1.70601 1.55899 1.31457 1.21590 0.95110 1.06614 0.92681 1.21896 0.91336 0.88156 0.98730 0.84907 1.45683 1.08046 1.16699 1.66466 1.15945 0.81534 0.83873 0.78736 1.91024 1.85254 1.17273 1.49613 1.44326 1.11440 1.17737 1.61785 1.20897 0.91142 0.81421 0.75009 1.90839 1.62091 1.35961 1.44686 0.92073 0.88372 0.92043 0.87306 0.86805 0.90151 0.90337 0.91087 0.88429 0.86335 0.70605 0.72909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.45 16 2 O -0.36 -5.34 10.57 -39.26 -0.41 -5.75 16 3 C 0.47 8.01 7.96 36.00 0.29 8.30 16 4 O -0.51 -10.04 15.73 -18.75 -0.29 -10.33 16 5 C -0.12 -2.10 6.08 -27.89 -0.17 -2.27 16 6 C 0.11 2.32 3.22 -4.04 -0.01 2.31 16 7 N -0.45 -9.34 2.18 -114.82 -0.25 -9.59 16 8 C -0.36 -8.25 9.05 -14.94 -0.14 -8.39 16 9 H 0.11 2.55 7.23 -52.49 -0.38 2.17 16 10 C 0.08 1.81 5.26 -17.47 -0.09 1.72 16 11 N -0.85 -21.58 13.96 55.50 0.77 -20.81 16 12 Si 0.87 19.32 25.05 -169.99 -4.26 15.06 16 13 H -0.27 -6.04 6.69 56.52 0.38 -5.66 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 16 C 0.48 9.01 7.47 -10.99 -0.08 8.92 16 17 O -0.60 -11.55 14.54 5.55 0.08 -11.47 16 18 C -0.12 -1.85 4.18 -27.89 -0.12 -1.96 16 19 C 0.11 1.43 3.18 -68.21 -0.22 1.21 16 20 H 0.13 1.66 8.07 -51.93 -0.42 1.24 16 21 N -0.70 -9.31 5.85 -59.19 -0.35 -9.66 16 22 C 0.70 9.61 8.99 -88.01 -0.79 8.82 16 23 O -0.56 -9.34 18.04 5.33 0.10 -9.24 16 24 N -0.68 -7.80 5.70 -15.79 -0.09 -7.89 16 25 C 0.53 6.81 8.15 -10.55 -0.09 6.72 16 26 O -0.47 -7.09 18.02 5.60 0.10 -6.99 16 27 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 28 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 30 H 0.11 1.75 8.14 -51.93 -0.42 1.32 16 31 H 0.11 1.90 8.14 -51.93 -0.42 1.48 16 32 H 0.08 1.76 3.61 -51.93 -0.19 1.57 16 33 H 0.08 1.63 7.58 -51.93 -0.39 1.23 16 34 H 0.28 6.70 8.31 -40.82 -0.34 6.37 16 35 H 0.10 1.49 7.67 -51.93 -0.40 1.09 16 36 H 0.12 1.86 8.10 -51.93 -0.42 1.44 16 37 H 0.45 6.05 8.01 -40.82 -0.33 5.72 16 38 H 0.43 3.87 8.96 -40.82 -0.37 3.50 16 LS Contribution 332.88 15.07 5.02 5.02 Total: -1.00 -29.72 332.88 -4.10 -33.82 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -4.16 Total: 11.02 kcal Atomic # 6 Polarization: 27.18 SS G_CDS: -0.35 Total: 26.83 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.09 Total: -47.95 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: -0.43 Total: -43.79 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.26 Total: 15.06 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.72 -4.10 -33.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152129159.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.725 kcal (2) G-P(sol) polarization free energy of solvation -29.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds