Wall clock time and date at job start Fri Apr 10 2020 18:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99973 * 2 1 4 4 O 1.20824 * 119.99899 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99892 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.46954 * 180.02562 * 5 3 2 7 7 N 1.46503 * 109.47341 * 179.97438 * 6 5 3 8 8 C 1.37097 * 120.00118 * 263.62295 * 7 6 5 9 9 H 1.08002 * 120.00011 * 142.24912 * 8 7 6 10 10 C 1.38943 * 120.00132 * 322.24913 * 8 7 6 11 11 N 1.31414 * 120.00286 * 157.63783 * 10 8 7 12 12 Si 1.86803 * 120.00043 * 337.64146 * 10 8 7 13 13 H 1.48492 * 109.47525 * 95.70229 * 12 10 8 14 14 H 1.48496 * 109.47291 * 215.70523 * 12 10 8 15 15 H 1.48506 * 109.46729 * 335.70200 * 12 10 8 16 16 C 1.34781 * 119.99868 * 83.62171 * 7 6 5 17 17 O 1.21290 * 119.99696 * 0.02562 * 16 7 6 18 18 C 1.50696 * 120.00066 * 180.02562 * 16 7 6 19 19 C 1.52993 * 109.47546 * 179.97438 * 18 16 7 20 20 H 1.09004 * 110.53362 * 57.82929 * 19 18 16 21 21 N 1.47311 * 110.59866 * 295.00394 * 19 18 16 22 22 C 1.34532 * 106.61905 * 241.31581 * 21 19 18 23 23 O 1.21537 * 123.77248 * 179.97438 * 22 21 19 24 24 N 1.33793 * 112.45379 * 0.26239 * 22 21 19 25 25 C 1.34772 * 111.64721 * 359.54191 * 24 22 21 26 26 O 1.21231 * 127.16212 * 180.14253 * 25 24 22 27 27 H 1.08997 * 109.47173 * 60.00107 * 1 2 3 28 28 H 1.09006 * 109.47090 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.46992 * 299.99511 * 1 2 3 30 30 H 1.09005 * 109.47233 * 60.00291 * 5 3 2 31 31 H 1.09004 * 109.47133 * 299.99887 * 5 3 2 32 32 H 1.09000 * 109.47346 * 59.99857 * 6 5 3 33 33 H 1.08998 * 109.47765 * 299.99792 * 6 5 3 34 34 H 0.97001 * 120.00093 * 180.02562 * 11 10 8 35 35 H 1.09003 * 109.47081 * 59.99242 * 18 16 7 36 36 H 1.09003 * 109.46907 * 299.99907 * 18 16 7 37 37 H 0.97002 * 126.69680 * 61.29451 * 21 19 18 38 38 H 0.96999 * 124.17506 * 179.69113 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7420 0.0002 7 7 5.4631 2.8188 0.0002 8 6 6.1407 2.9858 1.1803 9 1 7.0792 2.4759 1.3409 10 6 5.6202 3.8109 2.1696 11 7 5.9902 3.6511 3.4204 12 14 4.3944 5.1474 1.7217 13 1 3.0135 4.6434 1.9324 14 1 4.6234 6.3371 2.5803 15 1 4.5717 5.5241 0.2962 16 6 6.1428 2.7252 -1.1598 17 8 5.5432 2.5779 -2.2038 18 6 7.6478 2.8035 -1.1598 19 6 8.1655 2.6705 -2.5933 20 1 7.7396 3.4481 -3.2274 21 7 7.8579 1.3350 -3.1336 22 6 9.0375 0.7532 -3.4161 23 8 9.1453 -0.3646 -3.8810 24 7 10.0788 1.5402 -3.1225 25 6 9.6800 2.7272 -2.6243 26 8 10.3856 3.6469 -2.2694 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 3.9557 0.7809 -0.8909 31 1 3.9564 0.7806 0.8892 32 1 3.6107 3.2356 0.8906 33 1 3.6100 3.2368 -0.8893 34 1 5.6265 4.2269 4.1111 35 1 8.0536 1.9958 -0.5507 36 1 7.9616 3.7625 -0.7473 37 1 6.9766 0.9500 -3.2606 38 1 11.0063 1.2884 -3.2540 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152129159.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:30 Heat of formation + Delta-G solvation = -180.630640 kcal Electronic energy + Delta-G solvation = -26532.504511 eV Core-core repulsion = 22375.692658 eV Total energy + Delta-G solvation = -4156.811853 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.120 amu Computer time = 6.19 seconds Orbital eigenvalues (eV) -43.36262 -41.64364 -40.64520 -39.68128 -37.80230 -37.37649 -36.84393 -34.97268 -34.20545 -32.95807 -31.46710 -28.79575 -27.17718 -26.66729 -25.05268 -23.69013 -22.45459 -21.88854 -20.95922 -19.46662 -19.12319 -18.53725 -18.16956 -17.83059 -17.77236 -17.53092 -17.48443 -16.91986 -16.59021 -16.48044 -16.06565 -15.72664 -15.29176 -15.11325 -15.00207 -14.52014 -14.44342 -14.06432 -13.93829 -13.84953 -13.49676 -13.05177 -12.90229 -12.77687 -12.55846 -12.15198 -12.06792 -11.87642 -11.77612 -11.66061 -11.46346 -11.40412 -11.16875 -10.54143 -10.44748 -9.83561 -8.55000 -6.16476 0.52926 1.07766 1.21039 1.34625 1.41160 1.47808 1.58494 1.86057 1.97485 2.14538 2.16830 2.59863 2.90407 3.08782 3.66969 3.72822 3.87911 3.97360 4.07522 4.20673 4.29230 4.30594 4.43413 4.46609 4.67603 4.67823 4.68915 4.83447 4.90542 5.12159 5.28303 5.35654 5.81625 5.93271 6.06227 6.19016 6.39316 6.63374 6.91865 7.15857 7.34913 7.69161 8.57854 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.012022 B = 0.004765 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.501914 B = 5874.584223 C = 7598.996370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.472 3.528 4 O -0.541 6.541 5 C -0.115 4.115 6 C 0.113 3.887 7 N -0.467 5.467 8 C -0.343 4.343 9 H 0.101 0.899 10 C 0.044 3.956 11 N -0.884 5.884 12 Si 0.906 3.094 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.261 1.261 16 C 0.488 3.512 17 O -0.599 6.599 18 C -0.115 4.115 19 C 0.114 3.886 20 H 0.146 0.854 21 N -0.699 5.699 22 C 0.706 3.294 23 O -0.584 6.584 24 N -0.665 5.665 25 C 0.543 3.457 26 O -0.486 6.486 27 H 0.063 0.937 28 H 0.136 0.864 29 H 0.059 0.941 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.280 0.720 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.447 0.553 38 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.280 -4.863 -8.006 9.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.317 3.683 4 O -0.431 6.431 5 C -0.154 4.154 6 C -0.010 4.010 7 N -0.188 5.188 8 C -0.470 4.470 9 H 0.118 0.882 10 C -0.162 4.162 11 N -0.520 5.520 12 Si 0.733 3.267 13 H -0.203 1.203 14 H -0.211 1.211 15 H -0.185 1.185 16 C 0.278 3.722 17 O -0.485 6.485 18 C -0.155 4.155 19 C 0.004 3.996 20 H 0.164 0.836 21 N -0.363 5.363 22 C 0.405 3.595 23 O -0.462 6.462 24 N -0.337 5.337 25 C 0.329 3.671 26 O -0.356 6.356 27 H 0.082 0.918 28 H 0.154 0.846 29 H 0.078 0.922 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.121 0.879 36 H 0.138 0.862 37 H 0.294 0.706 38 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -1.459 -4.626 -8.318 9.629 hybrid contribution -0.856 0.668 0.386 1.153 sum -2.315 -3.957 -7.932 9.162 Atomic orbital electron populations 1.23592 0.74682 1.05900 1.02523 1.86512 1.25198 1.32325 1.83665 1.23866 0.92213 0.81315 0.70944 1.90643 1.67973 1.37449 1.47068 1.21636 0.86781 0.99660 1.07275 1.21348 0.82674 0.95155 1.01824 1.43733 1.03990 1.64525 1.06517 1.19009 1.08410 1.28506 0.91114 0.88159 1.25687 0.98038 0.97885 0.94630 1.69802 1.44266 1.37606 1.00335 0.86466 0.79858 0.80897 0.79508 1.20324 1.21138 1.18506 1.20539 0.90158 0.78925 0.82556 1.90557 1.71195 1.55329 1.31383 1.21549 0.92695 1.06916 0.94382 1.21847 0.91737 0.88455 0.97539 0.83632 1.45657 1.08031 1.16593 1.66069 1.15916 0.81835 0.83467 0.78266 1.91016 1.85617 1.18591 1.50949 1.44111 1.11818 1.16837 1.60895 1.20628 0.90649 0.81279 0.74516 1.90850 1.62410 1.36673 1.45658 0.91823 0.84562 0.92182 0.85936 0.86367 0.92037 0.91132 0.91033 0.87917 0.86194 0.70618 0.71346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.36 -10.00 10.57 -51.42 -0.54 -10.54 16 3 C 0.47 15.74 7.96 71.23 0.57 16.30 16 4 O -0.54 -21.06 15.73 21.97 0.35 -20.71 16 5 C -0.12 -3.83 6.08 29.85 0.18 -3.64 16 6 C 0.11 4.53 3.22 86.38 0.28 4.80 16 7 N -0.47 -18.83 2.18 -635.55 -1.39 -20.22 16 8 C -0.34 -15.46 9.05 84.04 0.76 -14.70 16 9 H 0.10 4.66 7.23 -2.91 -0.02 4.64 16 10 C 0.04 2.11 5.26 84.92 0.45 2.56 16 11 N -0.88 -45.46 13.96 21.66 0.30 -45.16 16 12 Si 0.91 40.04 25.05 68.60 1.72 41.76 16 13 H -0.28 -12.48 6.69 99.48 0.67 -11.81 16 14 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 15 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 16 C 0.49 17.40 7.47 87.65 0.65 18.06 16 17 O -0.60 -21.89 14.54 -3.06 -0.04 -21.94 16 18 C -0.11 -3.34 4.18 29.84 0.12 -3.21 16 19 C 0.11 2.73 3.18 44.37 0.14 2.87 16 20 H 0.15 3.23 8.07 -2.38 -0.02 3.21 16 21 N -0.70 -16.96 5.85 -459.61 -2.69 -19.65 16 22 C 0.71 17.89 8.99 179.44 1.61 19.50 16 23 O -0.58 -18.63 18.04 -3.83 -0.07 -18.70 16 24 N -0.67 -13.67 5.70 -441.11 -2.52 -16.18 16 25 C 0.54 12.69 8.15 87.94 0.72 13.41 16 26 O -0.49 -13.74 18.02 -2.88 -0.05 -13.79 16 27 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 28 H 0.14 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.06 1.23 8.13 -2.39 -0.02 1.22 16 30 H 0.12 3.71 8.14 -2.38 -0.02 3.69 16 31 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16 32 H 0.06 2.70 3.61 -2.39 -0.01 2.69 16 33 H 0.07 2.89 7.58 -2.39 -0.02 2.87 16 34 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 35 H 0.10 2.94 7.67 -2.39 -0.02 2.92 16 36 H 0.12 3.55 8.10 -2.39 -0.02 3.53 16 37 H 0.45 11.14 8.01 -92.71 -0.74 10.39 16 38 H 0.44 6.93 8.96 -92.71 -0.83 6.10 16 Total: -1.00 -62.25 332.88 1.28 -60.97 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: -0.47 Total: 26.49 kcal Atomic # 6 Polarization: 50.98 SS G_CDS: 6.68 Total: 57.66 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -6.29 Total: -101.21 kcal Atomic # 8 Polarization: -85.31 SS G_CDS: -0.36 Total: -85.68 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 1.72 Total: 41.76 kcal Total: -62.25 1.28 -60.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152129159.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.662 kcal (2) G-P(sol) polarization free energy of solvation -62.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.19 seconds