Wall clock time and date at job start Fri Apr 10 2020 18:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41378 * 126.79960 * 2 1 4 4 C 1.35452 * 103.98410 * 180.02562 * 3 2 1 5 5 C 1.50704 * 126.77613 * 179.97438 * 4 3 2 6 6 N 1.46895 * 109.47030 * 89.99650 * 5 4 3 7 7 C 1.46906 * 110.99789 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47053 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.46891 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47185 * 180.02562 * 9 8 7 11 11 C 1.34777 * 120.00580 * 180.02562 * 10 9 8 12 12 O 1.21285 * 119.99463 * 0.02562 * 11 10 9 13 13 C 1.50695 * 120.00450 * 179.97438 * 11 10 9 14 14 S 1.80999 * 109.47245 * 179.97438 * 13 11 10 15 15 C 1.76204 * 100.00185 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99828 * 0.02562 * 15 14 13 17 17 C 1.38798 * 120.00099 * 180.02562 * 15 14 13 18 18 N 1.31629 * 119.99878 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99799 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47494 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46982 * 119.99836 * 19 17 15 22 22 H 1.48501 * 109.47125 * 239.99693 * 19 17 15 23 23 O 1.34041 * 106.44515 * 0.23774 * 4 3 2 24 24 N 1.20924 * 111.56658 * 359.57137 * 23 4 3 25 25 H 1.09006 * 109.47200 * 90.00000 * 1 2 3 26 26 H 1.08997 * 109.46847 * 209.99778 * 1 2 3 27 27 H 1.08997 * 109.46894 * 330.00014 * 1 2 3 28 28 H 1.08007 * 128.00645 * 0.03272 * 3 2 1 29 29 H 1.08996 * 109.46908 * 329.99468 * 5 4 3 30 30 H 1.09002 * 109.46622 * 209.99642 * 5 4 3 31 31 H 1.00902 * 111.00273 * 303.95312 * 6 5 4 32 32 H 1.08992 * 109.47459 * 299.99826 * 7 6 5 33 33 H 1.09004 * 109.47040 * 59.99976 * 7 6 5 34 34 H 1.09001 * 109.47142 * 300.00160 * 8 7 6 35 35 H 1.09004 * 109.47006 * 60.00213 * 8 7 6 36 36 H 1.09001 * 109.47372 * 300.00036 * 9 8 7 37 37 H 1.09004 * 109.47108 * 60.00292 * 9 8 7 38 38 H 0.97002 * 120.00016 * 359.97438 * 10 9 8 39 39 H 1.09001 * 109.47545 * 300.00424 * 13 11 10 40 40 H 1.09004 * 109.46897 * 60.00102 * 13 11 10 41 41 H 0.97001 * 119.99673 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6025 0.6068 -0.0006 5 6 4.9022 1.3696 -0.0014 6 7 5.3252 1.6177 1.3833 7 6 6.5920 2.3605 1.4217 8 6 6.9989 2.6000 2.8770 9 6 8.3186 3.3730 2.9170 10 7 8.7086 3.6018 4.3104 11 6 9.8457 4.2685 4.5913 12 8 10.5459 4.6795 3.6904 13 6 10.2466 4.5043 6.0247 14 16 11.8079 5.4187 6.0720 15 6 12.0326 5.5507 7.8147 16 1 11.3034 5.1233 8.4871 17 6 13.1466 6.2039 8.3233 18 7 14.0351 6.7252 7.5038 19 14 13.3844 6.3444 10.1707 20 1 12.2530 5.6810 10.8674 21 1 14.6578 5.6854 10.5575 22 1 13.4318 7.7777 10.5561 23 8 3.4537 -0.7253 -0.0062 24 7 2.2868 -1.0423 -0.0006 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 2.0709 2.1744 0.0005 29 1 4.7648 2.3209 -0.5154 30 1 5.6657 0.7858 -0.5155 31 1 4.6061 2.1017 1.8999 32 1 7.3671 1.7833 0.9177 33 1 6.4668 3.3188 0.9174 34 1 6.2237 3.1774 3.3808 35 1 7.1241 1.6419 3.3816 36 1 9.0936 2.7952 2.4134 37 1 8.1939 4.3311 2.4122 38 1 8.1480 3.2740 5.0310 39 1 9.4714 5.0818 6.5285 40 1 10.3716 3.5462 6.5293 41 1 14.8138 7.1813 7.8593 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154802381.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:02 Heat of formation + Delta-G solvation = 12.870730 kcal Electronic energy + Delta-G solvation = -21493.279863 eV Core-core repulsion = 17923.444825 eV Total energy + Delta-G solvation = -3569.835038 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -45.32666 -39.20818 -37.54708 -35.29535 -35.06627 -33.02385 -32.43041 -31.08307 -29.14123 -29.06881 -26.55501 -25.48090 -23.95639 -23.38118 -21.94785 -20.59312 -20.25608 -18.02279 -17.88652 -17.71961 -16.55047 -16.25085 -16.12008 -15.57869 -15.23525 -14.88388 -14.80466 -14.51052 -14.34285 -13.89566 -13.84401 -13.53928 -13.32439 -13.11881 -12.90499 -12.61751 -12.49460 -12.07939 -11.89205 -11.76892 -11.54974 -11.17584 -11.06927 -11.02049 -10.75734 -10.45212 -9.94649 -9.80698 -9.41631 -9.08697 -9.07699 -8.89239 -8.23369 -6.50186 -6.22042 -3.92494 0.97899 1.76324 2.60759 3.01836 3.09672 3.21507 3.27795 3.32178 3.56428 3.74412 3.80104 3.99151 4.20228 4.50490 4.51711 4.64220 4.69319 4.77322 4.81860 4.95286 4.97236 5.02495 5.13323 5.17642 5.20177 5.27201 5.33272 5.33849 5.46979 5.63394 5.64200 5.82920 5.91171 5.94044 6.14114 6.28847 6.61213 6.70459 7.59795 7.70139 7.86011 8.35314 8.60907 9.23542 10.85493 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.042078 B = 0.001495 C = 0.001465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.268649 B =18718.902901 C =19112.544566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.013 3.987 3 C -0.230 4.230 4 C -0.019 4.019 5 C 0.136 3.864 6 N -0.686 5.686 7 C 0.063 3.937 8 C -0.129 4.129 9 C 0.123 3.877 10 N -0.739 5.739 11 C 0.531 3.469 12 O -0.518 6.518 13 C -0.153 4.153 14 S -0.061 6.061 15 C -0.535 4.535 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 O 0.109 5.891 24 N -0.365 5.365 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.170 0.830 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.346 0.654 32 H 0.082 0.918 33 H 0.040 0.960 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.398 0.602 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.026 -10.947 -15.164 32.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.145 4.145 3 C -0.252 4.252 4 C -0.083 4.083 5 C 0.007 3.993 6 N -0.318 5.318 7 C -0.066 4.066 8 C -0.167 4.167 9 C -0.002 4.002 10 N -0.394 5.394 11 C 0.317 3.683 12 O -0.393 6.393 13 C -0.304 4.304 14 S 0.165 5.835 15 C -0.683 4.683 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 O 0.042 5.958 24 N -0.069 5.069 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.188 0.812 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.164 0.836 32 H 0.101 0.899 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.232 0.768 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -24.599 -12.102 -16.641 32.070 hybrid contribution -1.370 1.206 2.329 2.959 sum -25.970 -10.896 -14.312 31.591 Atomic orbital electron populations 1.20174 0.85900 1.03895 1.03404 1.23615 0.99128 0.88788 1.02990 1.22465 0.91285 1.01194 1.10239 1.24319 0.97721 0.84001 1.02306 1.20331 0.90325 0.97238 0.91438 1.60407 1.06331 1.53298 1.11805 1.21889 0.91345 0.96418 0.96993 1.21740 0.96880 1.01480 0.96645 1.21170 0.95471 0.99900 0.83668 1.45979 1.25500 1.59961 1.07980 1.20315 0.79915 0.76774 0.91272 1.90702 1.51608 1.48940 1.48005 1.23531 1.06520 1.05509 0.94859 1.85396 1.18638 1.69917 1.09525 1.22915 1.11440 1.42531 0.91454 0.90862 1.24991 0.94852 0.94637 0.99099 1.70029 1.10991 1.34603 1.34672 0.86115 0.78261 0.78010 0.83093 1.19617 1.20560 1.20571 1.84851 1.21430 1.22668 1.66849 1.73885 0.89381 1.24185 1.19414 0.90152 0.90485 0.89970 0.81214 0.91307 0.88160 0.83559 0.89917 0.94220 0.91285 0.90112 0.91463 0.91727 0.76776 0.89228 0.89183 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.47 36.01 0.38 0.02 16 2 C 0.01 0.10 7.33 -82.10 -0.60 -0.50 16 3 C -0.23 -1.43 11.06 -39.38 -0.44 -1.87 16 4 C -0.02 -0.13 7.00 -35.30 -0.25 -0.38 16 5 C 0.14 0.67 6.25 -4.98 -0.03 0.64 16 6 N -0.69 -3.93 6.49 -115.06 -0.75 -4.68 16 7 C 0.06 0.36 5.69 -3.82 -0.02 0.34 16 8 C -0.13 -0.89 5.59 -26.73 -0.15 -1.03 16 9 C 0.12 1.28 5.67 -4.04 -0.02 1.26 16 10 N -0.74 -9.42 5.56 -60.30 -0.33 -9.75 16 11 C 0.53 9.77 7.85 -10.99 -0.09 9.69 16 12 O -0.52 -11.69 15.86 5.55 0.09 -11.60 16 13 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 14 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 15 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 16 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 17 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 18 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 19 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 23 O 0.11 1.06 11.20 17.17 0.19 1.25 16 24 N -0.36 -3.76 12.07 33.42 0.40 -3.36 16 25 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.17 0.61 8.06 -52.48 -0.42 0.18 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.35 1.73 8.72 -39.29 -0.34 1.38 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.40 3.90 8.47 -40.82 -0.35 3.55 16 39 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 40 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 41 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 LS Contribution 371.11 15.07 5.59 5.59 Total: -1.00 -36.16 371.11 -8.26 -44.42 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -6.15 Total: -1.31 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -0.80 Total: -7.62 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.06 Total: -43.18 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.28 Total: -10.35 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.16 -8.26 -44.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154802381.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.291 kcal (2) G-P(sol) polarization free energy of solvation -36.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds