Wall clock time and date at job start Fri Apr 10 2020 18:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41378 * 126.79960 * 2 1 4 4 C 1.35452 * 103.98410 * 180.02562 * 3 2 1 5 5 C 1.50704 * 126.77613 * 179.97438 * 4 3 2 6 6 N 1.46895 * 109.47030 * 89.99650 * 5 4 3 7 7 C 1.46906 * 110.99789 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47053 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.46891 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47185 * 180.02562 * 9 8 7 11 11 C 1.34777 * 120.00580 * 180.02562 * 10 9 8 12 12 O 1.21285 * 119.99463 * 0.02562 * 11 10 9 13 13 C 1.50695 * 120.00450 * 179.97438 * 11 10 9 14 14 S 1.80999 * 109.47245 * 179.97438 * 13 11 10 15 15 C 1.76204 * 100.00185 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99828 * 0.02562 * 15 14 13 17 17 C 1.38798 * 120.00099 * 180.02562 * 15 14 13 18 18 N 1.31629 * 119.99878 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99799 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47494 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46982 * 119.99836 * 19 17 15 22 22 H 1.48501 * 109.47125 * 239.99693 * 19 17 15 23 23 O 1.34041 * 106.44515 * 0.23774 * 4 3 2 24 24 N 1.20924 * 111.56658 * 359.57137 * 23 4 3 25 25 H 1.09006 * 109.47200 * 90.00000 * 1 2 3 26 26 H 1.08997 * 109.46847 * 209.99778 * 1 2 3 27 27 H 1.08997 * 109.46894 * 330.00014 * 1 2 3 28 28 H 1.08007 * 128.00645 * 0.03272 * 3 2 1 29 29 H 1.08996 * 109.46908 * 329.99468 * 5 4 3 30 30 H 1.09002 * 109.46622 * 209.99642 * 5 4 3 31 31 H 1.00902 * 111.00273 * 303.95312 * 6 5 4 32 32 H 1.08992 * 109.47459 * 299.99826 * 7 6 5 33 33 H 1.09004 * 109.47040 * 59.99976 * 7 6 5 34 34 H 1.09001 * 109.47142 * 300.00160 * 8 7 6 35 35 H 1.09004 * 109.47006 * 60.00213 * 8 7 6 36 36 H 1.09001 * 109.47372 * 300.00036 * 9 8 7 37 37 H 1.09004 * 109.47108 * 60.00292 * 9 8 7 38 38 H 0.97002 * 120.00016 * 359.97438 * 10 9 8 39 39 H 1.09001 * 109.47545 * 300.00424 * 13 11 10 40 40 H 1.09004 * 109.46897 * 60.00102 * 13 11 10 41 41 H 0.97001 * 119.99673 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6025 0.6068 -0.0006 5 6 4.9022 1.3696 -0.0014 6 7 5.3252 1.6177 1.3833 7 6 6.5920 2.3605 1.4217 8 6 6.9989 2.6000 2.8770 9 6 8.3186 3.3730 2.9170 10 7 8.7086 3.6018 4.3104 11 6 9.8457 4.2685 4.5913 12 8 10.5459 4.6795 3.6904 13 6 10.2466 4.5043 6.0247 14 16 11.8079 5.4187 6.0720 15 6 12.0326 5.5507 7.8147 16 1 11.3034 5.1233 8.4871 17 6 13.1466 6.2039 8.3233 18 7 14.0351 6.7252 7.5038 19 14 13.3844 6.3444 10.1707 20 1 12.2530 5.6810 10.8674 21 1 14.6578 5.6854 10.5575 22 1 13.4318 7.7777 10.5561 23 8 3.4537 -0.7253 -0.0062 24 7 2.2868 -1.0423 -0.0006 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 2.0709 2.1744 0.0005 29 1 4.7648 2.3209 -0.5154 30 1 5.6657 0.7858 -0.5155 31 1 4.6061 2.1017 1.8999 32 1 7.3671 1.7833 0.9177 33 1 6.4668 3.3188 0.9174 34 1 6.2237 3.1774 3.3808 35 1 7.1241 1.6419 3.3816 36 1 9.0936 2.7952 2.4134 37 1 8.1939 4.3311 2.4122 38 1 8.1480 3.2740 5.0310 39 1 9.4714 5.0818 6.5285 40 1 10.3716 3.5462 6.5293 41 1 14.8138 7.1813 7.8593 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154802381.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:00 Heat of formation + Delta-G solvation = -14.415831 kcal Electronic energy + Delta-G solvation = -21494.463097 eV Core-core repulsion = 17923.444825 eV Total energy + Delta-G solvation = -3571.018272 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -45.89474 -40.58610 -38.10023 -36.18672 -35.68478 -34.57835 -33.77336 -32.00396 -30.32905 -29.56813 -27.71897 -27.12906 -24.63198 -23.92982 -22.59178 -21.67123 -21.02982 -19.80632 -18.62121 -18.32745 -17.72088 -17.30553 -17.08725 -16.87271 -16.49853 -16.01383 -15.78851 -15.42652 -15.24744 -14.88923 -14.64687 -14.38433 -14.18879 -14.01275 -13.86794 -13.61632 -13.19998 -13.15162 -13.01737 -12.90363 -12.73841 -12.52486 -12.43461 -12.08478 -11.79412 -11.69885 -11.15124 -10.96007 -10.94669 -10.48967 -10.26256 -10.08683 -9.47368 -8.65800 -8.34167 -6.12074 0.44962 1.25598 1.28658 1.42176 1.48465 1.59512 1.63324 2.13501 2.27197 2.33160 3.00255 3.18128 3.30102 3.34034 3.53949 3.96151 4.02225 4.05869 4.14762 4.23494 4.26227 4.32002 4.36229 4.53046 4.57606 4.59539 4.62854 4.68253 4.72679 4.82573 4.91274 4.95998 5.19696 5.22132 5.25531 5.43051 5.48948 5.87482 6.20874 6.33977 6.53826 7.07482 7.27193 7.31091 8.75374 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.042078 B = 0.001495 C = 0.001465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.268649 B =18718.902901 C =19112.544566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.006 3.994 3 C -0.226 4.226 4 C -0.023 4.023 5 C 0.139 3.861 6 N -0.695 5.695 7 C 0.067 3.933 8 C -0.115 4.115 9 C 0.121 3.879 10 N -0.713 5.713 11 C 0.532 3.468 12 O -0.568 6.568 13 C -0.130 4.130 14 S -0.153 6.153 15 C -0.546 4.546 16 H 0.083 0.917 17 C 0.014 3.986 18 N -0.911 5.911 19 Si 0.999 3.001 20 H -0.257 1.257 21 H -0.274 1.274 22 H -0.274 1.274 23 O 0.081 5.919 24 N -0.404 5.404 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.103 0.897 28 H 0.199 0.801 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.352 0.648 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.417 0.583 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.295 -10.947 -14.137 33.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.153 4.153 3 C -0.248 4.248 4 C -0.087 4.087 5 C 0.010 3.990 6 N -0.328 5.328 7 C -0.062 4.062 8 C -0.153 4.153 9 C -0.003 4.003 10 N -0.367 5.367 11 C 0.318 3.682 12 O -0.446 6.446 13 C -0.281 4.281 14 S 0.074 5.926 15 C -0.694 4.694 16 H 0.101 0.899 17 C -0.191 4.191 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.180 1.180 21 H -0.200 1.200 22 H -0.199 1.199 23 O 0.018 5.982 24 N -0.113 5.113 25 H 0.110 0.890 26 H 0.091 0.909 27 H 0.122 0.878 28 H 0.216 0.784 29 H 0.110 0.890 30 H 0.119 0.881 31 H 0.171 0.829 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.254 0.746 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -26.910 -12.133 -15.610 33.392 hybrid contribution -0.791 1.161 1.923 2.381 sum -27.700 -10.972 -13.687 32.788 Atomic orbital electron populations 1.20319 0.84012 1.04724 1.04364 1.24251 1.00537 0.88875 1.01611 1.22842 0.90547 1.02114 1.09302 1.24774 0.98939 0.83233 1.01776 1.20419 0.89432 0.97928 0.91229 1.60338 1.06469 1.53555 1.12460 1.21802 0.91370 0.96916 0.96122 1.21604 0.95000 1.00936 0.97730 1.21331 0.97078 1.00130 0.81771 1.45750 1.23520 1.57554 1.09896 1.20065 0.81024 0.77192 0.89968 1.90691 1.53592 1.51449 1.48877 1.23381 1.02610 1.05361 0.96797 1.85573 1.24421 1.72102 1.10526 1.23248 1.11966 1.42664 0.91519 0.89889 1.26119 0.94329 0.93932 1.04714 1.70190 1.11738 1.35600 1.37277 0.84904 0.78627 0.78265 0.76133 1.18025 1.19984 1.19915 1.84796 1.21451 1.24166 1.67756 1.73883 0.89940 1.25793 1.21651 0.89044 0.90945 0.87837 0.78389 0.88995 0.88137 0.82945 0.90259 0.93211 0.89820 0.90138 0.92457 0.92163 0.74623 0.87126 0.87254 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.47 71.24 0.75 0.14 16 2 C 0.01 0.08 7.33 43.58 0.32 0.40 16 3 C -0.23 -2.39 11.06 22.40 0.25 -2.14 16 4 C -0.02 -0.29 7.00 25.04 0.18 -0.12 16 5 C 0.14 1.09 6.25 85.56 0.53 1.63 16 6 N -0.70 -6.38 6.49 -517.93 -3.36 -9.74 16 7 C 0.07 0.61 5.69 86.30 0.49 1.10 16 8 C -0.11 -1.26 5.59 30.59 0.17 -1.09 16 9 C 0.12 2.31 5.67 86.38 0.49 2.80 16 10 N -0.71 -16.67 5.56 -463.06 -2.57 -19.24 16 11 C 0.53 19.13 7.85 87.66 0.69 19.82 16 12 O -0.57 -25.96 15.86 -3.05 -0.05 -26.01 16 13 C -0.13 -5.07 6.16 71.23 0.44 -4.63 16 14 S -0.15 -8.49 20.57 -56.49 -1.16 -9.65 16 15 C -0.55 -31.08 9.50 67.95 0.65 -30.44 16 16 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 17 C 0.01 0.78 5.49 84.86 0.47 1.25 16 18 N -0.91 -55.88 13.22 21.65 0.29 -55.59 16 19 Si 1.00 43.40 29.55 68.60 2.03 45.43 16 20 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 O 0.08 1.59 11.20 71.62 0.80 2.40 16 24 N -0.40 -8.43 12.07 -49.57 -0.60 -9.03 16 25 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 26 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.20 0.76 8.06 -2.91 -0.02 0.74 16 29 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.35 2.55 8.72 -89.69 -0.78 1.76 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.37 8.14 -2.38 -0.02 0.35 16 34 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.42 6.82 8.47 -92.71 -0.79 6.04 16 39 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 40 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 41 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -81.53 371.11 0.27 -81.26 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -0.52 Total: 11.45 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 5.41 Total: -11.28 kcal Atomic # 7 Polarization: -87.35 SS G_CDS: -6.25 Total: -93.60 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: 0.75 Total: -23.61 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.65 kcal Total: -81.53 0.27 -81.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154802381.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.847 kcal (2) G-P(sol) polarization free energy of solvation -81.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds