Wall clock time and date at job start Fri Apr 10 2020 18:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34336 * 126.44581 * 2 1 4 4 N 1.34476 * 107.66964 * 179.76948 * 3 2 1 5 5 C 1.30261 * 108.70057 * 0.41711 * 4 3 2 6 6 C 1.50697 * 125.61777 * 179.83998 * 5 4 3 7 7 N 1.46905 * 109.47066 * 89.69742 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.46700 * 179.97438 * 9 8 7 11 11 N 1.46500 * 109.46884 * 179.97438 * 10 9 8 12 12 C 1.34783 * 120.00189 * 179.97438 * 11 10 9 13 13 O 1.21282 * 119.99795 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00125 * 179.97438 * 12 11 10 15 15 S 1.80996 * 109.46914 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99731 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00132 * 359.97438 * 16 15 14 18 18 C 1.38804 * 120.00212 * 180.02562 * 16 15 14 19 19 N 1.31627 * 119.99645 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00080 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47351 * 90.00080 * 20 18 16 22 22 H 1.48506 * 109.46917 * 209.99599 * 20 18 16 23 23 H 1.48500 * 109.47316 * 329.99727 * 20 18 16 24 24 O 1.33965 * 108.75961 * 359.58155 * 5 4 3 25 25 H 1.08998 * 109.47227 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46984 * 300.00090 * 1 2 3 27 27 H 1.08995 * 109.47052 * 60.00210 * 1 2 3 28 28 H 1.07996 * 126.16376 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.47558 * 329.69905 * 6 5 4 30 30 H 1.08998 * 109.47216 * 209.69567 * 6 5 4 31 31 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 32 32 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 33 33 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 34 34 H 1.08995 * 109.46615 * 299.99641 * 9 8 7 35 35 H 1.08996 * 109.46939 * 60.00272 * 9 8 7 36 36 H 1.08993 * 109.47740 * 299.99810 * 10 9 8 37 37 H 1.09005 * 109.47573 * 59.99976 * 10 9 8 38 38 H 0.97006 * 120.00210 * 0.02562 * 11 10 9 39 39 H 1.09001 * 109.47409 * 300.00682 * 14 12 11 40 40 H 1.09005 * 109.46741 * 59.99990 * 14 12 11 41 41 H 0.97002 * 120.00199 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 0.0052 5 6 3.5765 -0.6548 -0.0007 6 6 4.8004 -1.5340 -0.0013 7 7 5.1985 -1.8200 1.3836 8 6 6.3915 -2.6763 1.4222 9 6 6.7744 -2.9521 2.8777 10 6 8.0165 -3.8444 2.9179 11 7 8.3835 -4.1081 4.3115 12 6 9.4537 -4.8776 4.5926 13 8 10.1133 -5.3514 3.6918 14 6 9.8315 -5.1483 6.0261 15 16 11.3009 -6.2040 6.0737 16 6 11.5122 -6.3559 7.8164 17 1 10.8259 -5.8623 8.4886 18 6 12.5612 -7.1090 8.3253 19 7 13.3979 -7.7101 7.5061 20 14 12.7847 -7.2705 10.1728 21 1 12.0278 -8.4508 10.6617 22 1 14.2265 -7.4437 10.4837 23 1 12.2778 -6.0455 10.8418 24 8 2.3075 -1.0840 -0.0005 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.9822 2.1112 0.0004 29 1 5.6147 -1.0231 -0.5152 30 1 4.5761 -2.4687 -0.5152 31 1 4.4378 -2.2357 1.9000 32 1 6.1787 -3.6190 0.9180 33 1 7.2165 -2.1729 0.9183 34 1 6.9871 -2.0097 3.3822 35 1 5.9492 -3.4557 3.3812 36 1 7.8035 -4.7868 2.4134 37 1 8.8419 -3.3413 2.4142 38 1 7.8557 -3.7294 5.0320 39 1 10.0454 -4.2056 6.5298 40 1 9.0061 -5.6506 6.5307 41 1 14.1308 -8.2367 7.8616 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154802634.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:18 Heat of formation + Delta-G solvation = -22.803696 kcal Electronic energy + Delta-G solvation = -21481.491017 eV Core-core repulsion = 17910.109020 eV Total energy + Delta-G solvation = -3571.381998 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 6.21 seconds Orbital eigenvalues (eV) -43.75525 -39.18776 -37.42701 -35.22467 -34.95862 -33.15244 -32.42044 -31.72307 -29.47528 -28.06709 -25.71543 -25.40655 -23.83061 -22.72884 -21.91610 -21.33541 -20.27811 -17.83984 -17.45568 -17.26280 -16.73093 -16.21756 -16.04851 -15.58858 -15.14455 -14.85760 -14.79196 -14.70357 -14.08076 -13.95951 -13.82027 -13.63022 -13.15239 -12.94307 -12.93031 -12.75846 -12.60011 -12.06728 -11.87322 -11.75360 -11.68760 -11.16073 -11.05371 -11.01459 -10.90730 -10.75267 -9.80745 -9.40263 -9.22445 -9.06221 -9.00267 -8.87106 -8.22610 -6.49031 -6.20808 -3.91302 0.94057 2.12152 2.25017 3.02940 3.11441 3.23103 3.28204 3.32006 3.47561 3.69285 3.87075 4.21401 4.26545 4.50532 4.53318 4.62564 4.74490 4.79276 4.83249 4.84668 4.96290 5.11335 5.14384 5.20146 5.21920 5.36297 5.40624 5.49196 5.58478 5.65313 5.84853 5.85910 5.92947 5.96457 6.15451 6.30337 6.63119 6.71006 7.32504 7.60488 7.72076 8.36135 8.62684 9.24533 10.86664 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.041809 B = 0.001500 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.558746 B =18664.951654 C =19052.420108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.047 4.047 3 C -0.045 4.045 4 N -0.461 5.461 5 C 0.188 3.812 6 C 0.159 3.841 7 N -0.684 5.684 8 C 0.063 3.937 9 C -0.129 4.129 10 C 0.123 3.877 11 N -0.739 5.739 12 C 0.531 3.469 13 O -0.518 6.518 14 C -0.154 4.154 15 S -0.061 6.061 16 C -0.536 4.536 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 O -0.204 6.204 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.184 0.816 29 H 0.117 0.883 30 H 0.062 0.938 31 H 0.346 0.654 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.398 0.602 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.495 15.421 -15.154 34.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.100 4.100 3 C -0.183 4.183 4 N -0.190 5.190 5 C -0.020 4.020 6 C 0.029 3.971 7 N -0.316 5.316 8 C -0.066 4.066 9 C -0.167 4.167 10 C -0.002 4.002 11 N -0.394 5.394 12 C 0.317 3.683 13 O -0.393 6.393 14 C -0.304 4.304 15 S 0.166 5.834 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 O -0.091 6.091 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.201 0.799 29 H 0.135 0.865 30 H 0.080 0.920 31 H 0.164 0.836 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.232 0.768 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -24.318 15.405 -16.631 33.246 hybrid contribution -1.961 -0.479 2.341 3.091 sum -26.279 14.926 -14.291 33.430 Atomic orbital electron populations 1.20297 0.83892 1.04422 1.04001 1.23519 0.95088 0.84563 1.06858 1.23128 0.87805 1.00485 1.06922 1.70449 1.22901 1.09186 1.16492 1.26045 0.83856 0.90451 1.01600 1.20224 0.89265 0.95820 0.91763 1.60396 1.08798 1.50853 1.11599 1.21891 0.92665 0.94924 0.97095 1.21734 0.97627 1.00759 0.96591 1.21169 0.96284 0.99089 0.83657 1.45980 1.31496 1.53948 1.07985 1.20314 0.79374 0.77325 0.91267 1.90701 1.51116 1.49422 1.48019 1.23533 1.06324 1.05694 0.94868 1.85392 1.27574 1.60992 1.09469 1.22876 1.16846 1.37223 0.91470 0.90920 1.24989 0.94786 0.94692 0.99088 1.70018 1.15089 1.30436 1.34757 0.86167 0.77571 0.78622 0.83130 1.20284 1.20743 1.19697 1.84388 1.17988 1.36799 1.69894 0.90347 0.89177 0.89242 0.79920 0.86503 0.91961 0.83612 0.94135 0.89795 0.90075 0.91289 0.91703 0.91432 0.76778 0.89182 0.89238 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.21 10.43 36.00 0.38 0.16 16 2 C -0.05 -0.34 7.39 -35.69 -0.26 -0.60 16 3 C -0.04 -0.36 11.80 -17.77 -0.21 -0.57 16 4 N -0.46 -4.90 11.29 -11.10 -0.13 -5.02 16 5 C 0.19 1.71 7.86 -12.95 -0.10 1.61 16 6 C 0.16 1.06 6.31 -4.97 -0.03 1.03 16 7 N -0.68 -4.84 6.49 -115.05 -0.75 -5.58 16 8 C 0.06 0.42 5.69 -3.82 -0.02 0.39 16 9 C -0.13 -0.96 5.59 -26.73 -0.15 -1.11 16 10 C 0.12 1.34 5.67 -4.04 -0.02 1.31 16 11 N -0.74 -9.68 5.56 -60.29 -0.33 -10.02 16 12 C 0.53 9.93 7.85 -10.98 -0.09 9.84 16 13 O -0.52 -11.83 15.86 5.56 0.09 -11.75 16 14 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 15 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 16 C -0.54 -15.34 9.50 30.94 0.29 -15.04 16 17 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 20 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 O -0.20 -1.81 10.78 5.36 0.06 -1.75 16 25 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 26 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 28 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 29 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.35 2.25 8.72 -39.29 -0.34 1.91 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.40 4.04 8.47 -40.82 -0.35 3.69 16 39 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 40 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 41 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 371.59 15.07 5.60 5.60 Total: -1.00 -37.14 371.59 -8.21 -45.34 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.15 Total: -0.02 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -0.09 Total: -3.85 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: -0.47 Total: -46.14 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.15 Total: -13.50 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.14 -8.21 -45.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154802634.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.538 kcal (2) G-P(sol) polarization free energy of solvation -37.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.22 seconds