Wall clock time and date at job start Fri Apr 10 2020 18:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34336 * 126.44581 * 2 1 4 4 N 1.34476 * 107.66964 * 179.76948 * 3 2 1 5 5 C 1.30261 * 108.70057 * 0.41711 * 4 3 2 6 6 C 1.50697 * 125.61777 * 179.83998 * 5 4 3 7 7 N 1.46905 * 109.47066 * 89.69742 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.46700 * 179.97438 * 9 8 7 11 11 N 1.46500 * 109.46884 * 179.97438 * 10 9 8 12 12 C 1.34783 * 120.00189 * 179.97438 * 11 10 9 13 13 O 1.21282 * 119.99795 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00125 * 179.97438 * 12 11 10 15 15 S 1.80996 * 109.46914 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99731 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00132 * 359.97438 * 16 15 14 18 18 C 1.38804 * 120.00212 * 180.02562 * 16 15 14 19 19 N 1.31627 * 119.99645 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00080 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47351 * 90.00080 * 20 18 16 22 22 H 1.48506 * 109.46917 * 209.99599 * 20 18 16 23 23 H 1.48500 * 109.47316 * 329.99727 * 20 18 16 24 24 O 1.33965 * 108.75961 * 359.58155 * 5 4 3 25 25 H 1.08998 * 109.47227 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46984 * 300.00090 * 1 2 3 27 27 H 1.08995 * 109.47052 * 60.00210 * 1 2 3 28 28 H 1.07996 * 126.16376 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.47558 * 329.69905 * 6 5 4 30 30 H 1.08998 * 109.47216 * 209.69567 * 6 5 4 31 31 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 32 32 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 33 33 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 34 34 H 1.08995 * 109.46615 * 299.99641 * 9 8 7 35 35 H 1.08996 * 109.46939 * 60.00272 * 9 8 7 36 36 H 1.08993 * 109.47740 * 299.99810 * 10 9 8 37 37 H 1.09005 * 109.47573 * 59.99976 * 10 9 8 38 38 H 0.97006 * 120.00210 * 0.02562 * 11 10 9 39 39 H 1.09001 * 109.47409 * 300.00682 * 14 12 11 40 40 H 1.09005 * 109.46741 * 59.99990 * 14 12 11 41 41 H 0.97002 * 120.00199 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 0.0052 5 6 3.5765 -0.6548 -0.0007 6 6 4.8004 -1.5340 -0.0013 7 7 5.1985 -1.8200 1.3836 8 6 6.3915 -2.6763 1.4222 9 6 6.7744 -2.9521 2.8777 10 6 8.0165 -3.8444 2.9179 11 7 8.3835 -4.1081 4.3115 12 6 9.4537 -4.8776 4.5926 13 8 10.1133 -5.3514 3.6918 14 6 9.8315 -5.1483 6.0261 15 16 11.3009 -6.2040 6.0737 16 6 11.5122 -6.3559 7.8164 17 1 10.8259 -5.8623 8.4886 18 6 12.5612 -7.1090 8.3253 19 7 13.3979 -7.7101 7.5061 20 14 12.7847 -7.2705 10.1728 21 1 12.0278 -8.4508 10.6617 22 1 14.2265 -7.4437 10.4837 23 1 12.2778 -6.0455 10.8418 24 8 2.3075 -1.0840 -0.0005 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.9822 2.1112 0.0004 29 1 5.6147 -1.0231 -0.5152 30 1 4.5761 -2.4687 -0.5152 31 1 4.4378 -2.2357 1.9000 32 1 6.1787 -3.6190 0.9180 33 1 7.2165 -2.1729 0.9183 34 1 6.9871 -2.0097 3.3822 35 1 5.9492 -3.4557 3.3812 36 1 7.8035 -4.7868 2.4134 37 1 8.8419 -3.3413 2.4142 38 1 7.8557 -3.7294 5.0320 39 1 10.0454 -4.2056 6.5298 40 1 9.0061 -5.6506 6.5307 41 1 14.1308 -8.2367 7.8616 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154802634.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:10 Heat of formation + Delta-G solvation = -53.518590 kcal Electronic energy + Delta-G solvation = -21482.822915 eV Core-core repulsion = 17910.109020 eV Total energy + Delta-G solvation = -3572.713895 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 9.41 seconds Orbital eigenvalues (eV) -44.34463 -40.59583 -38.07453 -36.14400 -35.72679 -34.57964 -33.75942 -32.57184 -30.72144 -28.81560 -27.66233 -26.24805 -24.56630 -23.29530 -22.60536 -21.95682 -21.64632 -19.81305 -18.08179 -17.88642 -17.69999 -17.38080 -17.15363 -16.87219 -16.64023 -15.94626 -15.72411 -15.53610 -15.41772 -14.77478 -14.63966 -14.47044 -14.29646 -13.84614 -13.77404 -13.48725 -13.26515 -13.16028 -13.14211 -12.88068 -12.84442 -12.56251 -12.46315 -12.35934 -11.86076 -11.72028 -11.53961 -11.13667 -10.95730 -10.27091 -10.09805 -9.74822 -9.51112 -8.66183 -8.34103 -6.12266 0.37517 1.27871 1.43164 1.47737 1.56950 1.60190 1.62555 1.67180 2.26694 2.31088 2.96684 3.00143 3.25907 3.33828 3.82588 3.94635 3.99582 4.05425 4.11412 4.18421 4.22018 4.31440 4.37725 4.49723 4.52424 4.56062 4.68388 4.69460 4.71974 4.79437 5.02902 5.16085 5.17971 5.19416 5.31229 5.42482 5.47361 5.78927 6.20435 6.21938 6.52793 6.72785 7.07241 7.26222 8.75198 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.041809 B = 0.001500 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.558746 B =18664.951654 C =19052.420108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.045 4.045 3 C -0.068 4.068 4 N -0.496 5.496 5 C 0.177 3.823 6 C 0.161 3.839 7 N -0.691 5.691 8 C 0.067 3.933 9 C -0.114 4.114 10 C 0.122 3.878 11 N -0.713 5.713 12 C 0.532 3.468 13 O -0.567 6.567 14 C -0.130 4.130 15 S -0.153 6.153 16 C -0.548 4.548 17 H 0.083 0.917 18 C 0.014 3.986 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.258 1.258 24 O -0.214 6.214 25 H 0.082 0.918 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.203 0.797 29 H 0.118 0.882 30 H 0.080 0.920 31 H 0.349 0.651 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.417 0.583 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.919 16.433 -14.042 36.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.098 4.098 3 C -0.206 4.206 4 N -0.226 5.226 5 C -0.030 4.030 6 C 0.032 3.968 7 N -0.325 5.325 8 C -0.062 4.062 9 C -0.152 4.152 10 C -0.002 4.002 11 N -0.367 5.367 12 C 0.318 3.682 13 O -0.446 6.446 14 C -0.281 4.281 15 S 0.074 5.926 16 C -0.695 4.695 17 H 0.101 0.899 18 C -0.191 4.191 19 N -0.548 5.548 20 Si 0.821 3.179 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.182 1.182 24 O -0.101 6.101 25 H 0.101 0.899 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.220 0.780 29 H 0.136 0.864 30 H 0.098 0.902 31 H 0.167 0.833 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.254 0.746 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -26.806 16.458 -15.516 35.074 hybrid contribution -1.347 -0.698 1.906 2.436 sum -28.153 15.761 -13.610 35.018 Atomic orbital electron populations 1.20512 0.81009 1.05248 1.05650 1.24284 0.96610 0.83860 1.05069 1.23554 0.87345 1.01881 1.07819 1.70416 1.24432 1.10173 1.17605 1.26429 0.84498 0.90455 1.01663 1.20293 0.88557 0.96256 0.91728 1.60347 1.09029 1.51088 1.11992 1.21825 0.92564 0.95353 0.96437 1.21589 0.96170 0.99955 0.97474 1.21314 0.97544 0.99552 0.81840 1.45747 1.29484 1.51650 1.09845 1.20073 0.80332 0.77838 0.89997 1.90690 1.53176 1.51822 1.48897 1.23381 1.03108 1.04901 0.96746 1.85571 1.32705 1.63789 1.10521 1.23219 1.17336 1.37463 0.91516 0.89886 1.26125 0.94213 0.93994 1.04750 1.70183 1.15862 1.31379 1.37362 0.84948 0.77683 0.79226 0.76086 1.19280 1.20302 1.18218 1.84396 1.18179 1.37551 1.70021 0.89901 0.87543 0.87392 0.77981 0.86413 0.90185 0.83255 0.93179 0.89924 0.90019 0.89910 0.92146 0.92318 0.74621 0.87231 0.87127 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.43 71.23 0.74 0.47 16 2 C -0.05 -0.60 7.39 24.79 0.18 -0.42 16 3 C -0.07 -1.07 11.80 83.40 0.98 -0.08 16 4 N -0.50 -10.45 11.29 -303.83 -3.43 -13.88 16 5 C 0.18 3.13 7.86 88.34 0.69 3.82 16 6 C 0.16 1.99 6.31 85.55 0.54 2.53 16 7 N -0.69 -8.73 6.49 -517.92 -3.36 -12.09 16 8 C 0.07 0.76 5.69 86.30 0.49 1.25 16 9 C -0.11 -1.43 5.59 30.59 0.17 -1.26 16 10 C 0.12 2.46 5.67 86.38 0.49 2.95 16 11 N -0.71 -17.27 5.56 -463.06 -2.57 -19.85 16 12 C 0.53 19.49 7.85 87.66 0.69 20.18 16 13 O -0.57 -26.32 15.86 -3.03 -0.05 -26.37 16 14 C -0.13 -5.13 6.16 71.24 0.44 -4.70 16 15 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 16 C -0.55 -31.36 9.50 67.96 0.65 -30.72 16 17 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 18 C 0.01 0.79 5.49 84.86 0.47 1.26 16 19 N -0.91 -56.16 13.22 21.65 0.29 -55.88 16 20 Si 1.00 43.61 29.55 68.60 2.03 45.64 16 21 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 24 O -0.21 -3.63 10.78 -3.73 -0.04 -3.67 16 25 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 26 H 0.11 0.11 8.14 -2.38 -0.02 0.09 16 27 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 28 H 0.20 1.98 8.06 -2.91 -0.02 1.96 16 29 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.08 0.68 8.14 -2.39 -0.02 0.67 16 31 H 0.35 3.95 8.72 -89.69 -0.78 3.17 16 32 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.42 7.17 8.47 -92.70 -0.79 6.39 16 39 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 40 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 41 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -82.96 371.59 -2.28 -85.24 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -0.52 Total: 15.26 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 6.53 Total: -4.70 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -9.08 Total: -101.69 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.09 Total: -30.04 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -82.96 -2.28 -85.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154802634.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.724 kcal (2) G-P(sol) polarization free energy of solvation -82.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.41 seconds