Wall clock time and date at job start Fri Apr 10 2020 18:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30250 * 125.62069 * 2 1 4 4 C 1.34485 * 108.70025 * 179.97438 * 3 2 1 5 5 C 1.34325 * 107.66767 * 0.02562 * 4 3 2 6 6 C 1.50702 * 126.44374 * 179.97438 * 5 4 3 7 7 N 1.46908 * 109.47101 * 90.02157 * 6 5 4 8 8 C 1.46897 * 111.00083 * 180.02562 * 7 6 5 9 9 C 1.52993 * 109.47157 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47174 * 180.02562 * 9 8 7 11 11 N 1.46504 * 109.47445 * 179.97438 * 10 9 8 12 12 C 1.34776 * 120.00482 * 179.97438 * 11 10 9 13 13 O 1.21281 * 119.99733 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00075 * 179.97438 * 12 11 10 15 15 S 1.80995 * 109.46844 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99944 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99907 * 359.97438 * 16 15 14 18 18 C 1.38800 * 120.00045 * 180.02562 * 16 15 14 19 19 N 1.31628 * 119.99927 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99884 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47263 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47313 * 119.99911 * 20 18 16 23 23 H 1.48505 * 109.47303 * 239.99723 * 20 18 16 24 24 O 1.33974 * 125.61592 * 179.97438 * 2 1 3 25 25 H 1.08994 * 109.47516 * 270.02701 * 1 2 3 26 26 H 1.09002 * 109.47000 * 30.03000 * 1 2 3 27 27 H 1.09005 * 109.47091 * 150.02246 * 1 2 3 28 28 H 1.08000 * 126.16216 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.46996 * 210.02003 * 6 5 4 30 30 H 1.09001 * 109.46826 * 330.02641 * 6 5 4 31 31 H 1.00903 * 110.99728 * 303.96073 * 7 6 5 32 32 H 1.09001 * 109.46894 * 300.00024 * 8 7 6 33 33 H 1.08997 * 109.47035 * 59.99900 * 8 7 6 34 34 H 1.09001 * 109.47096 * 299.99727 * 9 8 7 35 35 H 1.08997 * 109.47371 * 59.99932 * 9 8 7 36 36 H 1.09002 * 109.47182 * 299.99160 * 10 9 8 37 37 H 1.08997 * 109.47772 * 59.99486 * 10 9 8 38 38 H 0.97007 * 119.99541 * 359.97438 * 11 10 9 39 39 H 1.09001 * 109.47393 * 299.99966 * 14 12 11 40 40 H 1.08997 * 109.47210 * 60.00255 * 14 12 11 41 41 H 0.97006 * 119.99859 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 3.5697 -0.6758 0.0004 6 6 4.7936 -1.5551 0.0003 7 7 5.1909 -1.8415 1.3853 8 6 6.3838 -2.6978 1.4244 9 6 6.7658 -2.9740 2.8799 10 6 8.0086 -3.8654 2.9207 11 7 8.3748 -4.1294 4.3145 12 6 9.4454 -4.8982 4.5960 13 8 10.1054 -5.3718 3.6955 14 6 9.8223 -5.1693 6.0297 15 16 11.2925 -6.2239 6.0778 16 6 11.5026 -6.3764 7.8206 17 1 10.8155 -5.8837 8.4925 18 6 12.5519 -7.1289 8.3299 19 7 13.3896 -7.7290 7.5109 20 14 12.7742 -7.2912 10.1775 21 1 11.7069 -6.5284 10.8734 22 1 12.6899 -8.7230 10.5624 23 1 14.1023 -6.7517 10.5656 24 8 2.2872 -1.0891 0.0005 25 1 -0.3634 0.0005 1.0276 26 1 -0.3633 0.8897 -0.5143 27 1 -0.3633 -0.8902 -0.5135 28 1 4.4157 1.3161 0.0011 29 1 4.5695 -2.4896 -0.5140 30 1 5.6081 -1.0440 -0.5130 31 1 5.3416 -0.9880 1.9020 32 1 6.1712 -3.6403 0.9198 33 1 7.2092 -2.1943 0.9211 34 1 6.9783 -2.0317 3.3849 35 1 5.9404 -3.4777 3.3829 36 1 7.7965 -4.8078 2.4157 37 1 8.8340 -3.3615 2.4178 38 1 7.8466 -3.7509 5.0347 39 1 10.0352 -4.2266 6.5339 40 1 8.9971 -5.6725 6.5334 41 1 14.1232 -8.2546 7.8669 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154815063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:32 Heat of formation + Delta-G solvation = -23.572308 kcal Electronic energy + Delta-G solvation = -21481.936264 eV Core-core repulsion = 17910.520937 eV Total energy + Delta-G solvation = -3571.415327 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 6.78 seconds Orbital eigenvalues (eV) -43.74399 -39.20904 -37.46046 -35.16875 -35.09689 -32.99551 -32.43172 -31.58556 -29.58536 -28.31707 -25.68111 -25.37930 -23.83700 -22.59487 -21.95117 -21.36551 -20.29800 -17.85483 -17.53506 -17.24882 -16.57963 -16.25225 -16.08799 -15.61502 -15.19540 -14.85929 -14.80488 -14.61497 -14.18099 -13.99486 -13.82465 -13.57147 -13.19190 -13.11279 -12.86624 -12.62901 -12.58053 -12.08246 -11.88692 -11.77572 -11.69686 -11.19446 -11.07048 -11.02179 -10.94023 -10.75782 -9.80948 -9.42360 -9.29044 -9.08166 -8.99621 -8.89266 -8.23524 -6.50347 -6.22151 -3.92626 0.95186 2.16428 2.23670 3.01303 3.09490 3.21385 3.27605 3.32003 3.54071 3.63828 3.82679 4.20088 4.25614 4.46525 4.53431 4.61394 4.74987 4.79559 4.84932 4.86838 4.97374 5.08335 5.13193 5.17971 5.20075 5.33394 5.40080 5.45867 5.57869 5.63929 5.82717 5.87200 5.90976 5.93994 6.13935 6.31048 6.60968 6.72202 7.28897 7.59642 7.69974 8.35169 8.60696 9.23401 10.85368 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.041682 B = 0.001497 C = 0.001467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.599521 B =18695.780609 C =19082.175922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.190 3.810 3 N -0.486 5.486 4 C -0.034 4.034 5 C -0.040 4.040 6 C 0.142 3.858 7 N -0.688 5.688 8 C 0.062 3.938 9 C -0.129 4.129 10 C 0.123 3.877 11 N -0.739 5.739 12 C 0.531 3.469 13 O -0.518 6.518 14 C -0.153 4.153 15 S -0.061 6.061 16 C -0.535 4.535 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 O -0.193 6.193 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.182 0.818 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.346 0.654 32 H 0.081 0.919 33 H 0.040 0.960 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.398 0.602 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.951 16.289 -15.175 32.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.016 4.016 3 N -0.216 5.216 4 C -0.174 4.174 5 C -0.094 4.094 6 C 0.013 3.987 7 N -0.320 5.320 8 C -0.067 4.067 9 C -0.167 4.167 10 C -0.002 4.002 11 N -0.394 5.394 12 C 0.317 3.683 13 O -0.393 6.393 14 C -0.304 4.304 15 S 0.165 5.835 16 C -0.683 4.683 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 O -0.080 6.080 25 H 0.112 0.888 26 H 0.119 0.881 27 H 0.107 0.893 28 H 0.199 0.801 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.164 0.836 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.232 0.768 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.374 15.405 -16.654 32.573 hybrid contribution 0.163 0.666 2.337 2.436 sum -23.211 16.070 -14.316 31.654 Atomic orbital electron populations 1.20280 0.81249 1.05152 1.04868 1.26356 0.96570 0.78672 1.00049 1.70460 1.02042 1.30354 1.18772 1.23103 0.95273 0.92919 1.06077 1.23240 0.83770 0.94916 1.07489 1.20254 0.88981 0.98216 0.91207 1.60439 1.37321 1.22216 1.12021 1.21882 0.90049 0.97776 0.96975 1.21734 0.97883 1.00453 0.96635 1.21169 0.96055 0.99309 0.83665 1.45982 1.31445 1.54022 1.07970 1.20317 0.79376 0.77308 0.91277 1.90701 1.51138 1.49370 1.48047 1.23530 1.06371 1.05669 0.94844 1.85396 1.27447 1.61108 1.09523 1.22915 1.16778 1.37203 0.91450 0.90861 1.24993 0.94811 0.94671 0.99105 1.70030 1.15019 1.30565 1.34681 0.86115 0.78204 0.78068 0.83086 1.19617 1.20560 1.20563 1.84414 1.16549 1.37613 1.69380 0.88765 0.88088 0.89258 0.80059 0.88740 0.91241 0.83561 0.90080 0.94202 0.91254 0.90187 0.91495 0.91707 0.76776 0.89220 0.89187 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.22 10.51 36.00 0.38 0.16 16 2 C 0.19 1.57 8.34 -12.95 -0.11 1.46 16 3 N -0.49 -4.77 11.29 -11.10 -0.13 -4.89 16 4 C -0.03 -0.28 11.80 -17.77 -0.21 -0.49 16 5 C -0.04 -0.32 6.90 -35.69 -0.25 -0.57 16 6 C 0.14 0.84 6.23 -4.97 -0.03 0.81 16 7 N -0.69 -4.47 6.49 -115.06 -0.75 -5.22 16 8 C 0.06 0.39 5.68 -3.83 -0.02 0.37 16 9 C -0.13 -0.94 5.59 -26.74 -0.15 -1.09 16 10 C 0.12 1.32 5.67 -4.04 -0.02 1.30 16 11 N -0.74 -9.58 5.56 -60.29 -0.33 -9.92 16 12 C 0.53 9.87 7.85 -10.99 -0.09 9.78 16 13 O -0.52 -11.78 15.86 5.56 0.09 -11.69 16 14 C -0.15 -3.09 6.16 36.00 0.22 -2.86 16 15 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 16 C -0.54 -15.27 9.50 30.94 0.29 -14.97 16 17 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 18 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 20 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 O -0.19 -1.79 10.78 5.34 0.06 -1.73 16 25 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.18 1.01 8.06 -52.49 -0.42 0.58 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.35 2.01 8.72 -39.29 -0.34 1.67 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.40 3.98 8.47 -40.82 -0.35 3.64 16 39 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 40 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 41 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 371.59 15.07 5.60 5.60 Total: -1.00 -37.11 371.59 -8.19 -45.30 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -6.15 Total: -0.39 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -0.08 Total: -4.10 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: -0.47 Total: -45.47 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.15 Total: -13.42 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.11 -8.19 -45.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154815063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.727 kcal (2) G-P(sol) polarization free energy of solvation -37.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.78 seconds