Wall clock time and date at job start Fri Apr 10 2020 18:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30250 * 125.62069 * 2 1 4 4 C 1.34485 * 108.70025 * 179.97438 * 3 2 1 5 5 C 1.34325 * 107.66767 * 0.02562 * 4 3 2 6 6 C 1.50702 * 126.44374 * 179.97438 * 5 4 3 7 7 N 1.46908 * 109.47101 * 90.02157 * 6 5 4 8 8 C 1.46897 * 111.00083 * 180.02562 * 7 6 5 9 9 C 1.52993 * 109.47157 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47174 * 180.02562 * 9 8 7 11 11 N 1.46504 * 109.47445 * 179.97438 * 10 9 8 12 12 C 1.34776 * 120.00482 * 179.97438 * 11 10 9 13 13 O 1.21281 * 119.99733 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00075 * 179.97438 * 12 11 10 15 15 S 1.80995 * 109.46844 * 180.02562 * 14 12 11 16 16 C 1.76201 * 99.99944 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99907 * 359.97438 * 16 15 14 18 18 C 1.38800 * 120.00045 * 180.02562 * 16 15 14 19 19 N 1.31628 * 119.99927 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99884 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47263 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47313 * 119.99911 * 20 18 16 23 23 H 1.48505 * 109.47303 * 239.99723 * 20 18 16 24 24 O 1.33974 * 125.61592 * 179.97438 * 2 1 3 25 25 H 1.08994 * 109.47516 * 270.02701 * 1 2 3 26 26 H 1.09002 * 109.47000 * 30.03000 * 1 2 3 27 27 H 1.09005 * 109.47091 * 150.02246 * 1 2 3 28 28 H 1.08000 * 126.16216 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.46996 * 210.02003 * 6 5 4 30 30 H 1.09001 * 109.46826 * 330.02641 * 6 5 4 31 31 H 1.00903 * 110.99728 * 303.96073 * 7 6 5 32 32 H 1.09001 * 109.46894 * 300.00024 * 8 7 6 33 33 H 1.08997 * 109.47035 * 59.99900 * 8 7 6 34 34 H 1.09001 * 109.47096 * 299.99727 * 9 8 7 35 35 H 1.08997 * 109.47371 * 59.99932 * 9 8 7 36 36 H 1.09002 * 109.47182 * 299.99160 * 10 9 8 37 37 H 1.08997 * 109.47772 * 59.99486 * 10 9 8 38 38 H 0.97007 * 119.99541 * 359.97438 * 11 10 9 39 39 H 1.09001 * 109.47393 * 299.99966 * 14 12 11 40 40 H 1.08997 * 109.47210 * 60.00255 * 14 12 11 41 41 H 0.97006 * 119.99859 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 3.5697 -0.6758 0.0004 6 6 4.7936 -1.5551 0.0003 7 7 5.1909 -1.8415 1.3853 8 6 6.3838 -2.6978 1.4244 9 6 6.7658 -2.9740 2.8799 10 6 8.0086 -3.8654 2.9207 11 7 8.3748 -4.1294 4.3145 12 6 9.4454 -4.8982 4.5960 13 8 10.1054 -5.3718 3.6955 14 6 9.8223 -5.1693 6.0297 15 16 11.2925 -6.2239 6.0778 16 6 11.5026 -6.3764 7.8206 17 1 10.8155 -5.8837 8.4925 18 6 12.5519 -7.1289 8.3299 19 7 13.3896 -7.7290 7.5109 20 14 12.7742 -7.2912 10.1775 21 1 11.7069 -6.5284 10.8734 22 1 12.6899 -8.7230 10.5624 23 1 14.1023 -6.7517 10.5656 24 8 2.2872 -1.0891 0.0005 25 1 -0.3634 0.0005 1.0276 26 1 -0.3633 0.8897 -0.5143 27 1 -0.3633 -0.8902 -0.5135 28 1 4.4157 1.3161 0.0011 29 1 4.5695 -2.4896 -0.5140 30 1 5.6081 -1.0440 -0.5130 31 1 5.3416 -0.9880 1.9020 32 1 6.1712 -3.6403 0.9198 33 1 7.2092 -2.1943 0.9211 34 1 6.9783 -2.0317 3.3849 35 1 5.9404 -3.4777 3.3829 36 1 7.7965 -4.8078 2.4157 37 1 8.8340 -3.3615 2.4178 38 1 7.8466 -3.7509 5.0347 39 1 10.0352 -4.2266 6.5339 40 1 8.9971 -5.6725 6.5334 41 1 14.1232 -8.2546 7.8669 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154815063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:27 Heat of formation + Delta-G solvation = -54.202168 kcal Electronic energy + Delta-G solvation = -21483.264475 eV Core-core repulsion = 17910.520937 eV Total energy + Delta-G solvation = -3572.743538 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -44.32697 -40.60473 -38.07346 -36.12910 -35.78307 -34.58450 -33.69052 -32.36067 -30.73845 -29.10533 -27.67576 -26.20414 -24.52317 -23.15681 -22.62476 -21.97084 -21.65137 -19.81894 -18.13846 -17.85582 -17.71988 -17.31249 -17.11242 -16.87868 -16.57177 -16.02924 -15.79511 -15.42903 -15.35653 -14.85200 -14.65272 -14.50465 -14.33067 -13.86112 -13.80359 -13.48104 -13.20645 -13.15877 -13.07397 -12.90880 -12.82806 -12.54495 -12.46580 -12.32309 -11.87698 -11.70692 -11.55621 -11.15726 -10.96505 -10.27186 -10.10877 -9.81851 -9.47252 -8.66672 -8.34782 -6.12826 0.38656 1.27636 1.41723 1.47646 1.58536 1.61728 1.62472 1.70021 2.25981 2.30376 2.99629 3.10443 3.21735 3.33178 3.76578 3.94000 3.96654 4.03885 4.07464 4.20751 4.23879 4.30903 4.40805 4.51893 4.55682 4.62689 4.64701 4.69416 4.69574 4.78055 5.03193 5.04601 5.16073 5.18762 5.36821 5.42366 5.46454 5.83928 6.20211 6.28383 6.51966 6.71158 7.06811 7.25402 8.74758 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.041682 B = 0.001497 C = 0.001467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.599521 B =18695.780609 C =19082.175922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.184 3.816 3 N -0.520 5.520 4 C -0.045 4.045 5 C -0.049 4.049 6 C 0.146 3.854 7 N -0.696 5.696 8 C 0.066 3.934 9 C -0.114 4.114 10 C 0.122 3.878 11 N -0.713 5.713 12 C 0.532 3.468 13 O -0.567 6.567 14 C -0.130 4.130 15 S -0.153 6.153 16 C -0.546 4.546 17 H 0.083 0.917 18 C 0.014 3.986 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.257 1.257 22 H -0.274 1.274 23 H -0.274 1.274 24 O -0.210 6.210 25 H 0.107 0.893 26 H 0.110 0.890 27 H 0.105 0.895 28 H 0.201 0.799 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.350 0.650 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.417 0.583 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.681 17.572 -14.080 34.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.022 4.022 3 N -0.250 5.250 4 C -0.183 4.183 5 C -0.102 4.102 6 C 0.017 3.983 7 N -0.328 5.328 8 C -0.063 4.063 9 C -0.152 4.152 10 C -0.003 4.003 11 N -0.367 5.367 12 C 0.318 3.682 13 O -0.446 6.446 14 C -0.281 4.281 15 S 0.074 5.926 16 C -0.694 4.694 17 H 0.101 0.899 18 C -0.191 4.191 19 N -0.548 5.548 20 Si 0.821 3.179 21 H -0.180 1.180 22 H -0.200 1.200 23 H -0.199 1.199 24 O -0.097 6.097 25 H 0.125 0.875 26 H 0.129 0.871 27 H 0.123 0.877 28 H 0.218 0.782 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.169 0.831 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.254 0.746 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -25.160 16.734 -15.555 33.985 hybrid contribution 0.580 0.348 1.911 2.027 sum -24.580 17.082 -13.644 32.896 Atomic orbital electron populations 1.20523 0.78592 1.06405 1.06031 1.27235 0.98007 0.78175 0.98813 1.70469 1.03013 1.31336 1.20221 1.23481 0.95480 0.93465 1.05916 1.23604 0.83903 0.95236 1.07441 1.20318 0.88737 0.98158 0.91062 1.60383 1.37313 1.22600 1.12548 1.21802 0.90371 0.97856 0.96237 1.21593 0.95879 1.00140 0.97581 1.21319 0.97484 0.99637 0.81825 1.45749 1.29408 1.51728 1.09843 1.20072 0.80348 0.77820 0.89997 1.90690 1.53215 1.51769 1.48925 1.23379 1.03091 1.04925 0.96738 1.85574 1.32576 1.63921 1.10549 1.23248 1.17245 1.37425 0.91495 0.89882 1.26124 0.94249 0.93987 1.04741 1.70191 1.15807 1.31511 1.37295 0.84901 0.78580 0.78326 0.76098 1.18024 1.19953 1.19918 1.84418 1.17278 1.38300 1.69740 0.87491 0.87136 0.87656 0.78187 0.88810 0.89205 0.83068 0.90367 0.93299 0.89874 0.90088 0.92419 0.92201 0.74613 0.87142 0.87207 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.36 10.51 71.24 0.75 0.39 16 2 C 0.18 2.92 8.34 88.34 0.74 3.66 16 3 N -0.52 -9.94 11.29 -303.83 -3.43 -13.37 16 4 C -0.04 -0.69 11.80 83.39 0.98 0.29 16 5 C -0.05 -0.73 6.90 24.79 0.17 -0.56 16 6 C 0.15 1.48 6.23 85.56 0.53 2.02 16 7 N -0.70 -7.64 6.49 -517.93 -3.36 -11.00 16 8 C 0.07 0.70 5.68 86.30 0.49 1.19 16 9 C -0.11 -1.36 5.59 30.59 0.17 -1.19 16 10 C 0.12 2.40 5.67 86.38 0.49 2.89 16 11 N -0.71 -17.00 5.56 -463.06 -2.57 -19.57 16 12 C 0.53 19.32 7.85 87.66 0.69 20.01 16 13 O -0.57 -26.16 15.86 -3.03 -0.05 -26.21 16 14 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 15 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 16 C -0.55 -31.17 9.50 67.95 0.65 -30.53 16 17 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 18 C 0.01 0.78 5.49 84.86 0.47 1.24 16 19 N -0.91 -55.99 13.22 21.65 0.29 -55.71 16 20 Si 1.00 43.49 29.55 68.60 2.03 45.52 16 21 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 O -0.21 -3.76 10.78 -3.79 -0.04 -3.80 16 25 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.10 0.29 8.14 -2.38 -0.02 0.27 16 28 H 0.20 1.98 8.06 -2.91 -0.02 1.96 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.35 3.31 8.72 -89.69 -0.78 2.52 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.42 7.01 8.47 -92.70 -0.79 6.22 16 39 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 40 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 41 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 Total: -1.00 -82.69 371.59 -2.26 -84.94 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -0.52 Total: 14.13 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 6.56 Total: -5.24 kcal Atomic # 7 Polarization: -90.58 SS G_CDS: -9.08 Total: -99.66 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.09 Total: -30.01 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -82.69 -2.26 -84.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154815063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.741 kcal (2) G-P(sol) polarization free energy of solvation -82.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds