Wall clock time and date at job start Fri Apr 10 2020 18:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86808 * 119.99975 * 2 1 4 4 H 1.48505 * 109.47080 * 240.00066 * 3 2 1 5 5 H 1.48503 * 109.46852 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47023 * 119.99915 * 3 2 1 7 7 C 1.38954 * 120.00353 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00390 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99650 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99943 * 179.97438 * 9 7 2 11 11 O 1.21285 * 119.99723 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99772 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46828 * 180.02562 * 12 10 9 14 14 C 1.46907 * 111.00060 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47007 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.46929 * 180.02562 * 15 14 13 17 17 N 1.46506 * 109.47237 * 179.97438 * 16 15 14 18 18 C 1.34773 * 119.99969 * 179.72043 * 17 16 15 19 19 O 1.21609 * 120.00089 * 0.02562 * 18 17 16 20 20 C 1.47446 * 119.99860 * 180.02562 * 18 17 16 21 21 C 1.37982 * 124.15629 * 180.02562 * 20 18 17 22 22 S 1.72104 * 104.03770 * 179.97438 * 21 20 18 23 23 N 1.56409 * 96.14957 * 0.02562 * 22 21 20 24 24 N 1.27417 * 109.87901 * 359.74189 * 23 22 21 25 25 H 0.96997 * 119.99859 * 0.02562 * 1 2 3 26 26 H 0.97000 * 120.00236 * 0.02562 * 9 7 2 27 27 H 1.08998 * 109.47654 * 59.99762 * 12 10 9 28 28 H 1.09005 * 109.47187 * 299.99237 * 12 10 9 29 29 H 1.00902 * 110.99849 * 303.95067 * 13 12 10 30 30 H 1.09000 * 109.46801 * 59.99734 * 14 13 12 31 31 H 1.08994 * 109.47121 * 299.99926 * 14 13 12 32 32 H 1.09000 * 109.47441 * 60.00268 * 15 14 13 33 33 H 1.09002 * 109.47087 * 299.99714 * 15 14 13 34 34 H 1.09001 * 109.47671 * 60.00109 * 16 15 14 35 35 H 1.08998 * 109.47454 * 300.00107 * 16 15 14 36 36 H 0.97005 * 119.99811 * 0.02562 * 17 16 15 37 37 H 1.08005 * 127.98236 * 359.96018 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6965 -1.2126 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0090 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0001 12 6 1.2439 -4.8629 0.0000 13 7 2.1985 -5.9794 0.0007 14 6 1.4982 -7.2708 0.0008 15 6 2.5232 -8.4067 0.0009 16 6 1.7938 -9.7517 0.0003 17 7 2.7752 -10.8395 -0.0002 18 6 2.3601 -12.1216 0.0050 19 8 1.1708 -12.3757 0.0096 20 6 3.3478 -13.2164 0.0051 21 6 3.0190 -14.5564 0.0096 22 16 4.5411 -15.3597 0.0066 23 7 5.4151 -14.0626 0.0011 24 7 4.6635 -13.0337 -0.0042 25 1 -0.4850 0.8400 -0.0004 26 1 0.3535 -2.3906 -0.0002 27 1 0.6175 -4.9205 -0.8902 28 1 0.6170 -4.9209 0.8898 29 1 2.8340 -5.9124 -0.7802 30 1 0.8737 -7.3455 -0.8895 31 1 0.8730 -7.3450 0.8904 32 1 3.1480 -8.3323 0.8909 33 1 3.1481 -8.3324 -0.8891 34 1 1.1693 -9.8260 -0.8899 35 1 1.1686 -9.8264 0.8900 36 1 3.7239 -10.6368 0.0003 37 1 2.0339 -14.9991 0.0142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163452009.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:35 Heat of formation + Delta-G solvation = -3.523510 kcal Electronic energy + Delta-G solvation = -21555.985526 eV Core-core repulsion = 17881.899237 eV Total energy + Delta-G solvation = -3674.086289 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.100 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.57808 -39.66221 -38.31296 -36.63023 -34.98390 -33.84569 -32.76793 -31.48531 -31.10143 -27.92024 -27.05515 -25.22851 -23.95527 -22.76842 -21.76665 -21.25849 -19.66720 -19.16544 -17.87463 -17.32341 -16.66153 -16.52405 -16.18184 -15.96662 -15.71106 -15.29218 -14.61414 -14.57173 -14.29676 -14.15408 -13.50598 -13.42109 -13.15460 -12.93469 -12.62037 -12.09213 -11.87729 -11.83256 -11.47665 -11.43351 -11.07748 -10.94570 -10.92621 -10.64011 -10.63331 -10.47508 -10.43453 -10.20515 -9.49318 -9.48823 -8.46720 -8.07015 -7.95262 -6.40818 -3.81721 -0.48727 0.36530 0.92553 0.98601 2.64527 2.67976 3.21030 3.26603 3.30503 3.31390 3.91649 4.07951 4.14306 4.29568 4.37761 4.75798 4.78983 4.94461 5.02712 5.17066 5.26314 5.39240 5.45327 5.59247 5.78738 5.88791 5.98146 5.99666 6.07717 6.27533 6.82097 7.11558 7.19377 7.55846 7.64392 7.64918 8.06935 8.62172 9.18570 9.55090 10.06624 10.76813 Molecular weight = 313.10amu Principal moments of inertia in cm(-1) A = 0.048881 B = 0.001562 C = 0.001516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.680582 B =17926.239105 C =18465.828454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.051 3.949 13 N -0.670 5.670 14 C 0.063 3.937 15 C -0.131 4.131 16 C 0.120 3.880 17 N -0.707 5.707 18 C 0.604 3.396 19 O -0.525 6.525 20 C -0.023 4.023 21 C -0.236 4.236 22 S 0.465 5.535 23 N -0.288 5.288 24 N -0.210 5.210 25 H 0.272 0.728 26 H 0.392 0.608 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.349 0.651 30 H 0.030 0.970 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.413 0.587 37 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.647 -31.516 -0.869 31.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.302 5.302 14 C -0.067 4.067 15 C -0.169 4.169 16 C -0.004 4.004 17 N -0.358 5.358 18 C 0.384 3.616 19 O -0.401 6.401 20 C -0.170 4.170 21 C -0.394 4.394 22 S 0.601 5.399 23 N -0.268 5.268 24 N -0.081 5.081 25 H 0.082 0.918 26 H 0.226 0.774 27 H 0.062 0.938 28 H 0.105 0.895 29 H 0.169 0.831 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.249 0.751 37 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 4.408 -31.909 -0.196 32.212 hybrid contribution -1.607 1.563 -0.888 2.412 sum 2.801 -30.345 -1.084 30.494 Atomic orbital electron populations 1.69604 1.05933 1.28262 1.50515 1.25265 0.95637 0.99720 0.97292 0.85911 0.78750 0.80432 0.79070 1.19933 1.20982 1.19877 1.19663 0.93367 0.82264 1.47733 0.87961 1.41857 1.09205 1.04594 1.64347 1.19812 0.88389 0.84738 0.84505 1.90519 1.13775 1.87072 1.55431 1.21671 0.94332 0.90908 1.01284 1.60043 1.18891 0.99882 1.51415 1.21818 0.95261 0.88771 1.00860 1.21759 0.99057 0.92059 1.04035 1.21461 0.91098 0.84804 1.03032 1.45858 1.11743 1.04891 1.73292 1.16619 0.86179 0.81556 0.77215 1.90861 1.15422 1.83612 1.50168 1.22691 0.91134 0.94862 1.08353 1.28920 1.08857 0.96658 1.04927 1.81624 0.89667 1.18929 1.49702 1.78669 1.26751 0.98980 1.22416 1.71543 1.01941 1.21828 1.12775 0.91823 0.77440 0.93800 0.89535 0.83127 0.95185 0.90704 0.89872 0.91015 0.90881 0.90641 0.75136 0.77349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.14 29.55 -169.99 -5.02 16.11 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 9 N -0.56 -14.37 5.29 -10.97 -0.06 -14.43 16 10 C 0.44 10.45 7.82 -10.98 -0.09 10.37 16 11 O -0.58 -15.96 15.78 5.55 0.09 -15.87 16 12 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 13 N -0.67 -10.58 6.13 -115.06 -0.70 -11.29 16 14 C 0.06 0.72 5.69 -3.82 -0.02 0.70 16 15 C -0.13 -1.22 5.59 -26.73 -0.15 -1.37 16 16 C 0.12 1.06 5.67 -4.04 -0.02 1.03 16 17 N -0.71 -6.33 5.55 -61.37 -0.34 -6.67 16 18 C 0.60 6.19 7.81 -12.51 -0.10 6.09 16 19 O -0.53 -6.70 16.80 5.27 0.09 -6.61 16 20 C -0.02 -0.20 6.87 -83.78 -0.58 -0.78 16 21 C -0.24 -1.35 11.21 30.64 0.34 -1.01 16 22 S 0.46 2.02 23.38 -107.50 -2.51 -0.49 16 23 N -0.29 -2.43 12.49 60.35 0.75 -1.67 16 24 N -0.21 -1.98 11.24 32.74 0.37 -1.62 16 25 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 26 H 0.39 9.54 7.90 -40.82 -0.32 9.21 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.35 5.66 8.43 -39.29 -0.33 5.33 16 30 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.41 3.27 8.06 -40.82 -0.33 2.94 16 37 H 0.21 0.75 8.06 -52.48 -0.42 0.32 16 LS Contribution 345.62 15.07 5.21 5.21 Total: -1.00 -34.42 345.62 -6.59 -41.01 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -4.30 Total: 12.38 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -0.88 Total: 7.81 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: 0.74 Total: -59.55 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: 0.18 Total: -22.48 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.51 Total: -0.49 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.42 -6.59 -41.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163452009.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.489 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds