Wall clock time and date at job start Fri Apr 10 2020 18:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86808 * 119.99975 * 2 1 4 4 H 1.48501 * 109.47141 * 270.00092 * 3 2 1 5 5 H 1.48500 * 109.46973 * 29.99962 * 3 2 1 6 6 H 1.48497 * 109.46929 * 149.99913 * 3 2 1 7 7 C 1.38954 * 120.00353 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00390 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99650 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99943 * 179.97438 * 9 7 2 11 11 O 1.21285 * 119.99723 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99772 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46828 * 180.02562 * 12 10 9 14 14 C 1.46907 * 111.00060 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47007 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.46929 * 180.02562 * 15 14 13 17 17 N 1.46506 * 109.47237 * 179.97438 * 16 15 14 18 18 C 1.34773 * 119.99969 * 179.72043 * 17 16 15 19 19 O 1.21581 * 120.00417 * 0.02562 * 18 17 16 20 20 C 1.47616 * 119.99771 * 180.02562 * 18 17 16 21 21 N 1.31868 * 126.46435 * 359.68619 * 20 18 17 22 22 N 1.28466 * 110.16104 * 179.85462 * 21 20 18 23 23 H 0.96999 * 124.93431 * 180.16844 * 22 21 20 24 24 C 1.35734 * 110.12908 * 0.42615 * 22 21 20 25 25 C 1.35541 * 107.11703 * 359.74359 * 24 22 21 26 26 F 1.35096 * 127.24258 * 179.97438 * 25 24 22 27 27 H 0.96997 * 119.99859 * 0.02562 * 1 2 3 28 28 H 0.97000 * 120.00236 * 0.02562 * 9 7 2 29 29 H 1.08998 * 109.47654 * 59.99762 * 12 10 9 30 30 H 1.09005 * 109.47187 * 299.99237 * 12 10 9 31 31 H 1.00902 * 110.99849 * 303.95067 * 13 12 10 32 32 H 1.09000 * 109.46801 * 59.99734 * 14 13 12 33 33 H 1.08994 * 109.47121 * 299.99926 * 14 13 12 34 34 H 1.09000 * 109.47441 * 60.00268 * 15 14 13 35 35 H 1.09002 * 109.47087 * 299.99714 * 15 14 13 36 36 H 1.09001 * 109.47671 * 60.00109 * 16 15 14 37 37 H 1.08998 * 109.47454 * 300.00107 * 16 15 14 38 38 H 0.97005 * 119.99811 * 0.02562 * 17 16 15 39 39 H 1.07997 * 126.43850 * 179.71113 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0090 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0001 12 6 1.2439 -4.8629 0.0000 13 7 2.1985 -5.9794 0.0007 14 6 1.4982 -7.2708 0.0008 15 6 2.5232 -8.4067 0.0009 16 6 1.7938 -9.7517 0.0003 17 7 2.7752 -10.8395 -0.0002 18 6 2.3601 -12.1216 0.0050 19 8 1.1711 -12.3757 0.0096 20 6 3.3489 -13.2176 0.0051 21 7 4.6613 -13.0891 -0.0054 22 7 5.2196 -14.2461 0.0013 23 1 6.1771 -14.4008 -0.0017 24 6 4.2748 -15.2206 0.0074 25 6 3.0671 -14.6053 0.0100 26 9 1.8504 -15.1924 0.0155 27 1 -0.4850 0.8400 -0.0004 28 1 0.3535 -2.3906 -0.0002 29 1 0.6175 -4.9205 -0.8902 30 1 0.6170 -4.9209 0.8898 31 1 2.8340 -5.9124 -0.7802 32 1 0.8737 -7.3455 -0.8895 33 1 0.8730 -7.3450 0.8904 34 1 3.1480 -8.3323 0.8909 35 1 3.1481 -8.3324 -0.8891 36 1 1.1693 -9.8260 -0.8899 37 1 1.1686 -9.8264 0.8900 38 1 3.7239 -10.6368 0.0003 39 1 4.4520 -16.2859 0.0093 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166111384.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:39 Heat of formation + Delta-G solvation = -75.448200 kcal Electronic energy + Delta-G solvation = -23810.530381 eV Core-core repulsion = 19702.945121 eV Total energy + Delta-G solvation = -4107.585260 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 313.134 amu Computer time = 6.73 seconds Orbital eigenvalues (eV) -49.72830 -43.73122 -40.58061 -40.14265 -37.65172 -36.14263 -35.66656 -33.38100 -33.20075 -32.11249 -31.55527 -28.66689 -26.77099 -25.45823 -24.00263 -22.86880 -22.57242 -21.35583 -21.02315 -19.95090 -19.86121 -18.30719 -17.84383 -17.55092 -17.21485 -17.03690 -16.93263 -16.59186 -16.31503 -16.05316 -15.96146 -15.62448 -15.37575 -15.31217 -15.03577 -14.65991 -14.28164 -13.62586 -13.55085 -13.36794 -13.18562 -12.85859 -12.72998 -12.43383 -12.40936 -12.18560 -12.11309 -11.85262 -11.50104 -11.42515 -10.74442 -10.34922 -10.19960 -10.02795 -10.01295 -9.32188 -8.46174 -5.95153 0.25260 0.78186 1.38795 1.42536 1.55532 1.67748 2.02512 2.05626 2.11005 2.30127 2.91558 3.04218 3.21101 3.51410 3.53430 3.81717 3.91242 4.01336 4.14768 4.19528 4.34511 4.42068 4.49820 4.57698 4.60039 4.70235 4.78994 5.13552 5.16441 5.19542 5.34120 5.41391 5.88625 5.89414 6.10592 6.31739 6.42786 6.60119 6.60512 7.03262 7.12829 7.56600 8.11705 8.71178 Molecular weight = 313.13amu Principal moments of inertia in cm(-1) A = 0.046747 B = 0.001579 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.830289 B =17724.040713 C =18289.778454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.336 4.336 8 H 0.079 0.921 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.623 6.623 12 C 0.064 3.936 13 N -0.684 5.684 14 C 0.063 3.937 15 C -0.115 4.115 16 C 0.125 3.875 17 N -0.702 5.702 18 C 0.595 3.405 19 O -0.569 6.569 20 C -0.060 4.060 21 N -0.235 5.235 22 N -0.343 5.343 23 H 0.478 0.522 24 C 0.007 3.993 25 C -0.011 4.011 26 F -0.120 7.120 27 H 0.278 0.722 28 H 0.397 0.603 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.345 0.655 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.418 0.582 39 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.551 -31.689 -1.001 32.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.465 4.465 8 H 0.097 0.903 9 N -0.211 5.211 10 C 0.224 3.776 11 O -0.510 6.510 12 C -0.068 4.068 13 N -0.317 5.317 14 C -0.066 4.066 15 C -0.153 4.153 16 C 0.001 3.999 17 N -0.353 5.353 18 C 0.380 3.620 19 O -0.446 6.446 20 C -0.220 4.220 21 N -0.074 5.074 22 N -0.062 5.062 23 H 0.330 0.670 24 C -0.139 4.139 25 C -0.040 4.040 26 F -0.099 7.099 27 H 0.087 0.913 28 H 0.230 0.770 29 H 0.085 0.915 30 H 0.122 0.878 31 H 0.164 0.836 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.255 0.745 39 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 9.209 -30.870 -0.323 32.216 hybrid contribution -0.682 0.292 -0.860 1.135 sum 8.527 -30.578 -1.183 31.767 Atomic orbital electron populations 1.69674 1.06854 1.29313 1.50267 1.26059 0.96553 1.02458 0.96228 0.84909 0.77858 0.76790 0.78653 1.19575 1.19569 1.19782 1.19689 0.92758 0.84064 1.50023 0.90254 1.41941 1.09358 1.04738 1.65022 1.20897 0.88271 0.86199 0.82184 1.90482 1.15847 1.87982 1.56691 1.21539 0.94051 0.88070 1.03181 1.60048 1.19159 1.00934 1.51512 1.21901 0.95746 0.87179 1.01783 1.21585 0.98411 0.91247 1.04107 1.21325 0.91141 0.84757 1.02643 1.45740 1.11766 1.04428 1.73395 1.17045 0.86359 0.82374 0.76234 1.90828 1.17556 1.84276 1.51949 1.21994 0.91494 0.93895 1.14604 1.73578 1.06509 1.09600 1.17665 1.43251 1.11422 1.01338 1.50219 0.67004 1.23331 0.85687 0.98823 1.06056 1.17680 0.82552 0.89969 1.13832 1.91486 1.40483 1.83068 1.94839 0.91294 0.76954 0.91465 0.87801 0.83593 0.93856 0.90133 0.90232 0.90368 0.91265 0.91286 0.74528 0.73633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.92 13.05 21.66 0.28 -49.64 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 3 Si 0.99 43.07 29.55 68.60 2.03 45.10 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.34 -19.22 9.68 84.04 0.81 -18.41 16 8 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 9 N -0.57 -29.67 5.29 -306.99 -1.62 -31.29 16 10 C 0.44 20.91 7.82 87.66 0.69 21.60 16 11 O -0.62 -34.69 15.78 -3.05 -0.05 -34.74 16 12 C 0.06 2.19 6.17 85.56 0.53 2.71 16 13 N -0.68 -20.99 6.13 -517.93 -3.17 -24.16 16 14 C 0.06 1.38 5.69 86.30 0.49 1.87 16 15 C -0.12 -2.08 5.59 30.59 0.17 -1.91 16 16 C 0.13 2.34 5.67 86.38 0.49 2.83 16 17 N -0.70 -13.31 5.55 -466.19 -2.59 -15.90 16 18 C 0.59 14.51 7.82 86.72 0.68 15.19 16 19 O -0.57 -18.34 16.67 -3.97 -0.07 -18.40 16 20 C -0.06 -1.17 7.13 42.45 0.30 -0.86 16 21 N -0.23 -3.06 11.91 -48.15 -0.57 -3.63 16 22 N -0.34 -1.45 6.86 -56.99 -0.39 -1.84 16 23 H 0.48 -2.39 8.96 -219.99 -1.97 -4.36 16 24 C 0.01 0.04 12.06 83.47 1.01 1.04 16 25 C -0.01 -0.18 8.03 22.48 0.18 0.00 16 26 F -0.12 -2.74 17.03 44.97 0.77 -1.97 16 27 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 28 H 0.40 19.46 7.90 -92.71 -0.73 18.73 16 29 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.10 3.22 8.14 -2.38 -0.02 3.20 16 31 H 0.35 10.97 8.43 -89.69 -0.76 10.22 16 32 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.42 6.23 8.19 -92.70 -0.76 5.47 16 39 H 0.25 -1.17 8.06 -2.91 -0.02 -1.20 16 Total: -1.00 -82.04 352.44 -2.64 -84.68 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: -3.07 Total: 27.97 kcal Atomic # 6 Polarization: 18.01 SS G_CDS: 5.81 Total: 23.82 kcal Atomic # 7 Polarization: -118.39 SS G_CDS: -8.07 Total: -126.46 kcal Atomic # 8 Polarization: -53.03 SS G_CDS: -0.11 Total: -53.14 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.77 Total: -1.97 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -82.04 -2.64 -84.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166111384.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.232 kcal (2) G-P(sol) polarization free energy of solvation -82.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.74 seconds