Wall clock time and date at job start Fri Apr 10 2020 18:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46899 * 109.46829 * 158.48882 * 3 2 1 5 5 C 1.46902 * 111.00064 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47259 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.46491 * 305.00168 * 6 5 4 8 8 C 1.54286 * 109.53506 * 185.02048 * 6 5 4 9 9 N 1.45124 * 109.82560 * 172.11272 * 8 6 5 10 10 C 1.34777 * 118.75987 * 269.42572 * 9 8 6 11 11 O 1.21283 * 119.99750 * 359.72610 * 10 9 8 12 12 C 1.50702 * 119.99928 * 180.02562 * 10 9 8 13 13 S 1.80999 * 109.46903 * 179.72354 * 12 10 9 14 14 C 1.76200 * 99.99730 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00351 * 0.02562 * 14 13 12 16 16 C 1.38796 * 120.00095 * 179.97438 * 14 13 12 17 17 N 1.31634 * 119.99941 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00384 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47035 * 59.99524 * 18 16 14 20 20 H 1.48499 * 109.47381 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46580 * 299.99884 * 18 16 14 22 22 C 1.47514 * 122.47883 * 89.14343 * 9 8 6 23 23 C 1.53568 * 111.03129 * 318.62789 * 22 9 8 24 24 C 1.51544 * 109.58338 * 320.02820 * 23 22 9 25 25 O 1.38013 * 109.46800 * 65.00092 * 6 5 4 26 26 H 1.08999 * 109.47083 * 38.49198 * 3 2 1 27 27 H 1.08999 * 109.47327 * 278.49059 * 3 2 1 28 28 H 1.00896 * 111.00246 * 303.95544 * 4 3 2 29 29 H 1.09000 * 109.46940 * 60.00202 * 5 4 3 30 30 H 1.09001 * 109.47323 * 300.00387 * 5 4 3 31 31 H 1.09003 * 109.22047 * 52.06836 * 8 6 5 32 32 H 1.09002 * 109.41168 * 292.28199 * 8 6 5 33 33 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 34 34 H 1.08994 * 109.46990 * 59.72065 * 12 10 9 35 35 H 0.97002 * 120.00288 * 179.97438 * 17 16 14 36 36 H 1.08990 * 109.16697 * 79.03473 * 22 9 8 37 37 H 1.09005 * 109.16442 * 198.23601 * 22 9 8 38 38 H 1.09002 * 109.45251 * 80.05845 * 23 22 9 39 39 H 1.08992 * 109.45529 * 200.01494 * 23 22 9 40 40 H 1.09000 * 109.59152 * 211.18108 * 24 23 22 41 41 H 1.09000 * 109.58990 * 331.46871 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 1.2894 -0.5079 5 6 4.5655 1.3268 -0.5217 6 6 5.0362 2.6815 -1.0549 7 1 4.5875 2.8633 -2.0315 8 6 6.5732 2.6774 -1.1890 9 7 7.0115 3.8841 -1.8656 10 6 7.1262 3.8694 -3.2084 11 8 6.8698 2.8587 -3.8279 12 6 7.5795 5.1068 -3.9395 13 16 7.6401 4.7692 -5.7167 14 6 8.1827 6.3380 -6.3077 15 1 8.3684 7.1426 -5.6116 16 6 8.3726 6.5395 -7.6678 17 7 8.1477 5.5584 -8.5162 18 14 8.9485 8.2024 -8.2943 19 1 10.2682 8.5268 -7.6959 20 1 9.0724 8.1582 -9.7735 21 1 7.9619 9.2442 -7.9116 22 6 7.3303 5.1280 -1.1396 23 6 6.3113 5.3899 -0.0211 24 6 4.9206 5.0355 -0.5077 25 8 4.6538 3.6782 -0.1801 26 1 2.9717 -0.8035 -0.6396 27 1 2.9715 -0.1509 1.0164 28 1 2.7214 1.4831 -1.4241 29 1 4.9432 0.5318 -1.1647 30 1 4.9422 1.1847 0.4912 31 1 6.8807 1.8054 -1.7663 32 1 7.0233 2.6332 -0.1973 33 1 6.8787 5.9194 -3.7477 34 1 8.5715 5.3924 -3.5899 35 1 8.2800 5.6992 -9.4667 36 1 8.3258 5.0430 -0.7042 37 1 7.3167 5.9640 -1.8390 38 1 6.5592 4.7782 0.8464 39 1 6.3405 6.4433 0.2573 40 1 4.1879 5.6796 -0.0214 41 1 4.8659 5.1705 -1.5879 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199912989.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:57 Heat of formation + Delta-G solvation = -39.311927 kcal Electronic energy + Delta-G solvation = -23580.431208 eV Core-core repulsion = 20008.333359 eV Total energy + Delta-G solvation = -3572.097848 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.55740 -38.53962 -37.50008 -35.95294 -35.22431 -33.15342 -32.47012 -30.51835 -29.48728 -27.08844 -26.39523 -25.52171 -23.92074 -22.02986 -21.51333 -19.20719 -18.36694 -17.82936 -17.03136 -16.79532 -16.61126 -16.14000 -15.76681 -15.20737 -15.01359 -14.84313 -14.49497 -14.14632 -13.89829 -13.87288 -13.47867 -13.30716 -12.86939 -12.84592 -12.68619 -12.53640 -12.36495 -12.04203 -11.96486 -11.72841 -11.52299 -11.22396 -11.08602 -11.07234 -10.81331 -10.61974 -9.85713 -9.69585 -9.46211 -9.10051 -8.95589 -8.57981 -8.28791 -6.55713 -6.25791 -3.97120 2.29497 2.47967 2.83371 2.92822 3.20342 3.21585 3.25949 3.45746 3.50347 3.55941 3.98155 4.16029 4.57216 4.62293 4.69798 4.73556 4.83297 4.95518 4.95681 5.06368 5.07695 5.09682 5.19350 5.31390 5.35988 5.40653 5.52190 5.58718 5.66168 5.76841 5.79441 5.85262 5.90450 6.04624 6.33677 6.61852 6.79914 7.24041 7.33968 7.54800 7.55771 8.30514 8.44363 9.19448 10.81549 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.018782 B = 0.002808 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.432369 B = 9968.530108 C =10692.353557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.211 3.789 3 C 0.154 3.846 4 N -0.678 5.678 5 C 0.073 3.927 6 C 0.092 3.908 7 H 0.056 0.944 8 C 0.085 3.915 9 N -0.618 5.618 10 C 0.529 3.471 11 O -0.514 6.514 12 C -0.152 4.152 13 S -0.061 6.061 14 C -0.536 4.536 15 H 0.072 0.928 16 C 0.074 3.926 17 N -0.868 5.868 18 Si 0.919 3.081 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.274 1.274 22 C 0.104 3.896 23 C -0.165 4.165 24 C 0.075 3.925 25 O -0.372 6.372 26 H 0.079 0.921 27 H 0.118 0.882 28 H 0.351 0.649 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.269 0.731 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.392 -5.455 20.512 21.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.105 5.105 2 C -0.108 4.108 3 C 0.022 3.978 4 N -0.311 5.311 5 C -0.056 4.056 6 C 0.032 3.968 7 H 0.073 0.927 8 C -0.040 4.040 9 N -0.354 5.354 10 C 0.317 3.683 11 O -0.388 6.388 12 C -0.302 4.302 13 S 0.166 5.834 14 C -0.684 4.684 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.199 1.199 22 C -0.018 4.018 23 C -0.203 4.203 24 C -0.002 4.002 25 O -0.290 6.290 26 H 0.096 0.904 27 H 0.136 0.864 28 H 0.170 0.830 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.579 -6.753 20.177 21.996 hybrid contribution 1.567 1.927 -0.693 2.579 sum -4.012 -4.826 19.484 20.469 Atomic orbital electron populations 1.81234 1.13079 1.07695 1.08452 1.29016 0.95073 0.93358 0.93372 1.19385 0.81667 0.92763 1.03970 1.60296 1.08750 1.29359 1.32710 1.21939 0.86328 0.94842 1.02500 1.21876 0.93686 0.87905 0.93365 0.92661 1.22093 0.94717 0.88985 0.98223 1.47880 1.68827 1.12211 1.06487 1.20456 0.76536 0.90008 0.81317 1.90689 1.48312 1.33718 1.66051 1.23583 1.03715 0.97918 1.05017 1.85391 1.88297 1.18967 0.90779 1.22804 1.52723 0.97916 0.94982 0.90990 1.24992 0.94940 0.97906 0.95701 1.70004 1.45656 1.31548 1.03055 0.86226 0.79230 0.82329 0.77739 1.19913 1.20788 1.19918 1.21994 0.98184 0.86595 0.95073 1.22482 0.95988 1.02948 0.98912 1.22155 0.95457 0.82292 1.00275 1.86303 1.81286 1.13924 1.47535 0.90365 0.86433 0.83020 0.92422 0.89258 0.88995 0.90076 0.89307 0.89229 0.92088 0.91491 0.89297 0.90249 0.89588 0.89187 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.16 18.54 42.15 0.78 -4.38 16 2 C 0.21 1.83 15.69 -20.76 -0.33 1.50 16 3 C 0.15 0.76 6.16 -6.61 -0.04 0.72 16 4 N -0.68 -4.93 6.41 -116.89 -0.75 -5.68 16 5 C 0.07 0.51 5.34 -3.82 -0.02 0.49 16 6 C 0.09 0.93 2.81 -26.06 -0.07 0.86 16 7 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 8 C 0.08 0.90 4.82 -4.11 -0.02 0.88 16 9 N -0.62 -7.93 2.21 -172.80 -0.38 -8.31 16 10 C 0.53 9.35 7.65 -10.98 -0.08 9.26 16 11 O -0.51 -10.87 15.29 5.55 0.08 -10.79 16 12 C -0.15 -2.93 4.49 36.01 0.16 -2.77 16 13 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 14 C -0.54 -14.91 9.50 30.94 0.29 -14.61 16 15 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 16 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 17 N -0.87 -25.75 13.22 55.49 0.73 -25.02 16 18 Si 0.92 21.01 29.55 -169.99 -5.02 15.99 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 C 0.10 1.03 6.00 -3.19 -0.02 1.01 16 23 C -0.16 -1.31 5.78 -27.17 -0.16 -1.47 16 24 C 0.07 0.72 6.37 36.42 0.23 0.95 16 25 O -0.37 -3.92 9.40 -26.53 -0.25 -4.17 16 26 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.35 2.73 8.71 -39.29 -0.34 2.39 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 1.08 7.27 -51.93 -0.38 0.70 16 32 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 33 H 0.09 1.58 7.41 -51.91 -0.38 1.20 16 34 H 0.09 1.61 8.04 -51.92 -0.42 1.19 16 35 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.91 5.88 -51.93 -0.31 0.61 16 38 H 0.08 0.61 8.01 -51.93 -0.42 0.20 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.62 7.41 -51.93 -0.38 0.23 16 LS Contribution 358.72 15.07 5.41 5.41 Total: -1.00 -35.60 358.72 -7.73 -43.33 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -5.98 Total: -1.35 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -0.15 Total: -1.20 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.39 Total: -43.39 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.16 Total: -14.96 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.60 -7.73 -43.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199912989.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.018 kcal (2) G-P(sol) polarization free energy of solvation -35.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds