Wall clock time and date at job start Fri Apr 10 2020 18:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46899 * 109.46829 * 158.48882 * 3 2 1 5 5 C 1.46902 * 111.00064 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47259 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.46491 * 305.00168 * 6 5 4 8 8 C 1.54286 * 109.53506 * 185.02048 * 6 5 4 9 9 N 1.45124 * 109.82560 * 172.11272 * 8 6 5 10 10 C 1.34777 * 118.75987 * 269.42572 * 9 8 6 11 11 O 1.21283 * 119.99750 * 359.72610 * 10 9 8 12 12 C 1.50702 * 119.99928 * 180.02562 * 10 9 8 13 13 S 1.80999 * 109.46903 * 179.72354 * 12 10 9 14 14 C 1.76200 * 99.99730 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00351 * 0.02562 * 14 13 12 16 16 C 1.38796 * 120.00095 * 179.97438 * 14 13 12 17 17 N 1.31634 * 119.99941 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00384 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47035 * 59.99524 * 18 16 14 20 20 H 1.48499 * 109.47381 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46580 * 299.99884 * 18 16 14 22 22 C 1.47514 * 122.47883 * 89.14343 * 9 8 6 23 23 C 1.53568 * 111.03129 * 318.62789 * 22 9 8 24 24 C 1.51544 * 109.58338 * 320.02820 * 23 22 9 25 25 O 1.38013 * 109.46800 * 65.00092 * 6 5 4 26 26 H 1.08999 * 109.47083 * 38.49198 * 3 2 1 27 27 H 1.08999 * 109.47327 * 278.49059 * 3 2 1 28 28 H 1.00896 * 111.00246 * 303.95544 * 4 3 2 29 29 H 1.09000 * 109.46940 * 60.00202 * 5 4 3 30 30 H 1.09001 * 109.47323 * 300.00387 * 5 4 3 31 31 H 1.09003 * 109.22047 * 52.06836 * 8 6 5 32 32 H 1.09002 * 109.41168 * 292.28199 * 8 6 5 33 33 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 34 34 H 1.08994 * 109.46990 * 59.72065 * 12 10 9 35 35 H 0.97002 * 120.00288 * 179.97438 * 17 16 14 36 36 H 1.08990 * 109.16697 * 79.03473 * 22 9 8 37 37 H 1.09005 * 109.16442 * 198.23601 * 22 9 8 38 38 H 1.09002 * 109.45251 * 80.05845 * 23 22 9 39 39 H 1.08992 * 109.45529 * 200.01494 * 23 22 9 40 40 H 1.09000 * 109.59152 * 211.18108 * 24 23 22 41 41 H 1.09000 * 109.58990 * 331.46871 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 1.2894 -0.5079 5 6 4.5655 1.3268 -0.5217 6 6 5.0362 2.6815 -1.0549 7 1 4.5875 2.8633 -2.0315 8 6 6.5732 2.6774 -1.1890 9 7 7.0115 3.8841 -1.8656 10 6 7.1262 3.8694 -3.2084 11 8 6.8698 2.8587 -3.8279 12 6 7.5795 5.1068 -3.9395 13 16 7.6401 4.7692 -5.7167 14 6 8.1827 6.3380 -6.3077 15 1 8.3684 7.1426 -5.6116 16 6 8.3726 6.5395 -7.6678 17 7 8.1477 5.5584 -8.5162 18 14 8.9485 8.2024 -8.2943 19 1 10.2682 8.5268 -7.6959 20 1 9.0724 8.1582 -9.7735 21 1 7.9619 9.2442 -7.9116 22 6 7.3303 5.1280 -1.1396 23 6 6.3113 5.3899 -0.0211 24 6 4.9206 5.0355 -0.5077 25 8 4.6538 3.6782 -0.1801 26 1 2.9717 -0.8035 -0.6396 27 1 2.9715 -0.1509 1.0164 28 1 2.7214 1.4831 -1.4241 29 1 4.9432 0.5318 -1.1647 30 1 4.9422 1.1847 0.4912 31 1 6.8807 1.8054 -1.7663 32 1 7.0233 2.6332 -0.1973 33 1 6.8787 5.9194 -3.7477 34 1 8.5715 5.3924 -3.5899 35 1 8.2800 5.6992 -9.4667 36 1 8.3258 5.0430 -0.7042 37 1 7.3167 5.9640 -1.8390 38 1 6.5592 4.7782 0.8464 39 1 6.3405 6.4433 0.2573 40 1 4.1879 5.6796 -0.0214 41 1 4.8659 5.1705 -1.5879 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199912989.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:56 Heat of formation + Delta-G solvation = -65.541050 kcal Electronic energy + Delta-G solvation = -23581.568588 eV Core-core repulsion = 20008.333359 eV Total energy + Delta-G solvation = -3573.235228 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.58227 -39.62119 -38.18247 -36.76885 -36.17129 -34.58971 -33.92182 -31.71293 -30.41506 -28.07114 -27.55387 -27.17779 -24.70112 -22.85540 -22.28371 -20.51878 -19.53997 -18.95803 -18.20005 -17.80843 -17.54231 -17.02265 -16.88267 -16.44473 -16.15714 -16.05831 -15.67645 -15.30585 -14.97054 -14.72474 -14.52554 -14.34055 -14.10361 -13.82290 -13.62760 -13.51883 -13.29126 -13.17177 -12.91745 -12.86388 -12.67072 -12.57775 -12.55486 -12.25190 -12.00287 -11.74770 -11.41399 -11.13299 -10.87599 -10.51218 -10.27371 -9.62195 -9.45081 -8.67897 -8.35102 -6.13386 1.25297 1.43513 1.45444 1.52463 1.55242 1.65277 1.82070 2.09001 2.27122 2.74580 2.96860 2.99111 3.23166 3.40719 3.65806 3.84464 3.95057 4.04433 4.13750 4.19016 4.30879 4.33160 4.44431 4.47655 4.54751 4.57510 4.62870 4.72374 4.73611 4.81657 4.89616 5.06290 5.15588 5.21107 5.40928 5.62284 5.86073 6.17047 6.19432 6.21181 6.59785 6.74806 7.06204 7.12498 8.73777 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.018782 B = 0.002808 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.432369 B = 9968.530108 C =10692.353557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C 0.238 3.762 3 C 0.157 3.843 4 N -0.694 5.694 5 C 0.080 3.920 6 C 0.097 3.903 7 H 0.019 0.981 8 C 0.082 3.918 9 N -0.604 5.604 10 C 0.527 3.473 11 O -0.559 6.559 12 C -0.125 4.125 13 S -0.151 6.151 14 C -0.546 4.546 15 H 0.083 0.917 16 C 0.014 3.986 17 N -0.911 5.911 18 Si 0.997 3.003 19 H -0.261 1.261 20 H -0.280 1.280 21 H -0.262 1.262 22 C 0.094 3.906 23 C -0.152 4.152 24 C 0.068 3.932 25 O -0.376 6.376 26 H 0.108 0.892 27 H 0.147 0.853 28 H 0.344 0.656 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.271 0.729 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.132 -4.281 23.264 23.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.174 5.174 2 C -0.080 4.080 3 C 0.026 3.974 4 N -0.326 5.326 5 C -0.049 4.049 6 C 0.037 3.963 7 H 0.037 0.963 8 C -0.042 4.042 9 N -0.337 5.337 10 C 0.315 3.685 11 O -0.437 6.437 12 C -0.276 4.276 13 S 0.076 5.924 14 C -0.693 4.693 15 H 0.101 0.899 16 C -0.191 4.191 17 N -0.548 5.548 18 Si 0.819 3.181 19 H -0.185 1.185 20 H -0.205 1.205 21 H -0.187 1.187 22 C -0.027 4.027 23 C -0.190 4.190 24 C -0.008 4.008 25 O -0.294 6.294 26 H 0.125 0.875 27 H 0.165 0.835 28 H 0.161 0.839 29 H 0.087 0.913 30 H 0.130 0.870 31 H 0.098 0.902 32 H 0.131 0.869 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.129 0.871 40 H 0.122 0.878 41 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -4.316 -5.566 23.000 24.054 hybrid contribution 1.170 1.549 -1.408 2.398 sum -3.146 -4.017 21.592 22.187 Atomic orbital electron populations 1.81255 1.15299 1.09931 1.10936 1.29721 0.95714 0.91300 0.91245 1.19711 0.79024 0.92514 1.06120 1.60283 1.08959 1.30950 1.32446 1.21921 0.86154 0.93008 1.03775 1.21829 0.92944 0.89508 0.92050 0.96294 1.22305 0.95387 0.87457 0.99037 1.47898 1.66945 1.14045 1.04827 1.20195 0.76679 0.88701 0.82963 1.90671 1.50724 1.34860 1.67468 1.23405 1.05254 0.99425 0.99539 1.85555 1.88668 1.20410 0.97779 1.23151 1.52474 0.98037 0.95670 0.89916 1.26121 0.94824 1.02270 0.95909 1.70175 1.47045 1.34161 1.03392 0.85023 0.79220 0.76871 0.77025 1.18542 1.20493 1.18675 1.22314 1.00105 0.84846 0.95437 1.22412 0.93769 1.04705 0.98091 1.22294 0.97268 0.82340 0.98944 1.86312 1.81514 1.14243 1.47347 0.87476 0.83510 0.83858 0.91292 0.87037 0.90203 0.86896 0.87780 0.87511 0.92002 0.89276 0.89804 0.89012 0.87142 0.87822 0.95351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -12.10 18.54 20.01 0.37 -11.73 16 2 C 0.24 3.89 15.69 89.44 1.40 5.30 16 3 C 0.16 1.12 6.16 84.50 0.52 1.64 16 4 N -0.69 -8.86 6.41 -523.72 -3.36 -12.21 16 5 C 0.08 0.93 5.34 86.30 0.46 1.39 16 6 C 0.10 1.85 2.81 31.03 0.09 1.93 16 7 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 8 C 0.08 1.60 4.82 87.07 0.42 2.02 16 9 N -0.60 -14.65 2.21 -819.00 -1.81 -16.45 16 10 C 0.53 18.74 7.65 87.66 0.67 19.41 16 11 O -0.56 -24.55 15.29 -3.04 -0.05 -24.60 16 12 C -0.13 -4.83 4.49 71.24 0.32 -4.51 16 13 S -0.15 -8.26 20.57 -56.49 -1.16 -9.43 16 14 C -0.55 -30.63 9.50 67.95 0.65 -29.99 16 15 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 16 C 0.01 0.76 5.49 84.86 0.47 1.23 16 17 N -0.91 -55.48 13.22 21.65 0.29 -55.20 16 18 Si 1.00 42.90 29.55 68.60 2.03 44.93 16 19 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 20 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 22 C 0.09 1.59 6.00 86.38 0.52 2.11 16 23 C -0.15 -1.87 5.78 30.31 0.18 -1.70 16 24 C 0.07 1.18 6.37 71.50 0.46 1.63 16 25 O -0.38 -7.16 9.40 -117.84 -1.11 -8.27 16 26 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.15 0.28 8.14 -2.39 -0.02 0.27 16 28 H 0.34 5.20 8.71 -89.70 -0.78 4.42 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 1.81 7.27 -2.39 -0.02 1.79 16 32 H 0.11 1.53 8.12 -2.39 -0.02 1.51 16 33 H 0.10 3.67 7.41 -2.39 -0.02 3.65 16 34 H 0.11 3.73 8.04 -2.40 -0.02 3.71 16 35 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 36 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.08 1.52 5.88 -2.38 -0.01 1.51 16 38 H 0.09 0.99 8.01 -2.39 -0.02 0.97 16 39 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.03 0.64 7.41 -2.39 -0.02 0.62 16 Total: -1.00 -82.04 358.72 1.62 -80.43 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.27 Total: 12.06 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 6.14 Total: 0.47 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -4.51 Total: -95.59 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -1.15 Total: -32.87 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: -8.26 SS G_CDS: -1.16 Total: -9.43 kcal Total: -82.04 1.62 -80.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199912989.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.888 kcal (2) G-P(sol) polarization free energy of solvation -82.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds