Wall clock time and date at job start Fri Apr 10 2020 18:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45193 * 109.47243 * 2 1 4 4 C 1.34229 * 117.00059 * 179.97438 * 3 2 1 5 5 O 1.20816 * 120.00182 * 359.97438 * 4 3 2 6 6 C 1.50708 * 120.00111 * 179.97438 * 4 3 2 7 7 H 1.09003 * 109.46515 * 299.99934 * 6 4 3 8 8 C 1.52993 * 109.47228 * 180.02562 * 6 4 3 9 9 C 1.50703 * 109.47262 * 175.00005 * 8 6 4 10 10 O 1.21276 * 119.99655 * 359.97438 * 9 8 6 11 11 N 1.34777 * 119.99851 * 179.97438 * 9 8 6 12 12 C 1.47585 * 134.48714 * 179.97438 * 11 9 8 13 13 C 1.53946 * 86.11303 * 155.35829 * 12 11 9 14 14 O 1.42897 * 113.74194 * 269.15036 * 13 12 11 15 15 C 1.50705 * 113.74193 * 137.95267 * 13 12 11 16 16 H 1.08000 * 119.99753 * 17.18899 * 15 13 12 17 17 C 1.37873 * 119.99893 * 197.19270 * 15 13 12 18 18 N 1.31512 * 119.99488 * 194.35249 * 17 15 13 19 19 Si 1.86797 * 120.00211 * 14.35029 * 17 15 13 20 20 H 1.48498 * 109.46923 * 180.02562 * 19 17 15 21 21 H 1.48497 * 109.47361 * 300.00177 * 19 17 15 22 22 H 1.48501 * 109.47273 * 60.00378 * 19 17 15 23 23 C 1.47807 * 134.46136 * 359.86744 * 11 9 8 24 24 C 1.50697 * 109.46926 * 59.99661 * 6 4 3 25 25 C 1.50699 * 120.00457 * 275.00017 * 24 6 4 26 26 O 1.20765 * 119.99913 * 95.00536 * 24 6 4 27 27 H 1.09005 * 109.47040 * 60.00317 * 1 2 3 28 28 H 1.09004 * 109.47286 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47180 * 300.00063 * 1 2 3 30 30 H 1.08997 * 109.47372 * 239.99419 * 2 1 3 31 31 H 1.09005 * 109.47040 * 119.99683 * 2 1 3 32 32 H 1.08997 * 109.47651 * 54.99519 * 8 6 4 33 33 H 1.09003 * 109.46991 * 294.99996 * 8 6 4 34 34 H 1.08992 * 113.77064 * 41.05629 * 12 11 9 35 35 H 1.08997 * 113.76476 * 269.65826 * 12 11 9 36 36 H 0.96694 * 114.00247 * 174.14979 * 14 13 12 37 37 H 0.97001 * 120.00716 * 354.86282 * 18 17 15 38 38 H 1.08994 * 113.77033 * 90.37473 * 23 11 9 39 39 H 1.09004 * 113.83092 * 318.91824 * 23 11 9 40 40 H 1.09000 * 109.47342 * 89.99874 * 25 24 6 41 41 H 1.08997 * 109.47489 * 210.00252 * 25 24 6 42 42 H 1.09005 * 109.47116 * 330.00291 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.5852 3.4689 -0.8905 8 6 5.4486 2.8573 0.0001 9 6 6.0244 4.2444 -0.1243 10 8 5.2854 5.2026 -0.2055 11 7 7.3605 4.4200 -0.1452 12 6 8.2477 5.5946 -0.2526 13 6 9.3032 4.7316 0.4623 14 8 9.2792 4.8552 1.8857 15 6 10.6886 4.8648 -0.1157 16 1 10.9295 5.7028 -0.7529 17 6 11.6484 3.9168 0.1690 18 7 12.9139 4.1644 -0.0893 19 14 11.1513 2.2811 0.9216 20 1 12.3602 1.4442 1.1297 21 1 10.4839 2.5190 2.2267 22 1 10.2146 1.5797 0.0072 23 6 8.5252 3.5133 -0.0677 24 6 3.4556 3.6738 1.2297 25 6 2.1245 4.3802 1.2267 26 8 4.1497 3.6980 2.2177 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 5.7807 2.2492 -0.8413 33 1 5.7886 2.4049 0.9317 34 1 7.9133 6.4525 0.3306 35 1 8.5125 5.8527 -1.2779 36 1 9.8784 4.2497 2.3433 37 1 13.1646 4.9816 -0.5477 38 1 8.8716 3.1592 -1.0386 39 1 8.4120 2.7123 0.6629 40 1 1.3484 3.6944 1.5665 41 1 2.1678 5.2399 1.8953 42 1 1.8943 4.7173 0.2159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261738202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:39 Heat of formation + Delta-G solvation = -167.856249 kcal Electronic energy + Delta-G solvation = -26884.102021 eV Core-core repulsion = 22831.384451 eV Total energy + Delta-G solvation = -4052.717570 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.23682 -39.91960 -39.23272 -37.62406 -37.01772 -34.22896 -33.46763 -32.62755 -31.99592 -30.43774 -28.97152 -26.61924 -25.51222 -24.56051 -23.43861 -21.89566 -20.40983 -19.64583 -18.63298 -18.08551 -17.92199 -17.27190 -17.06010 -16.29979 -16.03020 -15.65316 -15.32610 -15.05333 -14.84279 -14.45022 -14.17340 -14.02294 -13.58802 -13.52023 -13.17629 -13.13281 -12.76973 -12.56097 -12.31327 -12.23937 -12.17817 -12.09523 -12.01916 -11.90620 -11.62305 -11.24482 -10.92016 -10.84704 -10.77728 -10.41981 -10.01848 -9.80369 -9.55721 -9.43964 -9.02579 -8.50536 -8.05249 -6.73592 -4.47532 1.56975 1.89305 2.32084 2.96818 3.10794 3.19274 3.24583 3.42653 3.79729 4.17606 4.18276 4.43220 4.53216 4.57707 4.74063 4.84151 4.87303 4.92820 5.04297 5.22721 5.26027 5.34400 5.35050 5.36570 5.49125 5.50933 5.55895 5.73041 5.85979 5.95338 5.99199 6.03991 6.21218 6.29346 6.36891 6.70057 7.28068 7.39502 7.54837 8.07415 8.20657 8.47155 8.56707 8.72285 9.27972 10.62806 Molecular weight = 313.14amu Principal moments of inertia in cm(-1) A = 0.021079 B = 0.003533 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.996222 B = 7923.878952 C = 8666.056915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.354 6.354 4 C 0.478 3.522 5 O -0.490 6.490 6 C -0.118 4.118 7 H 0.144 0.856 8 C -0.121 4.121 9 C 0.537 3.463 10 O -0.563 6.563 11 N -0.627 5.627 12 C 0.130 3.870 13 C 0.200 3.800 14 O -0.565 6.565 15 C -0.617 4.617 16 H 0.070 0.930 17 C 0.036 3.964 18 N -0.886 5.886 19 Si 1.038 2.962 20 H -0.278 1.278 21 H -0.279 1.279 22 H -0.272 1.272 23 C 0.055 3.945 24 C 0.379 3.621 25 C -0.192 4.192 26 O -0.437 6.437 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.367 0.633 37 H 0.274 0.726 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.827 -7.715 -1.518 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.271 6.271 4 C 0.320 3.680 5 O -0.377 6.377 6 C -0.138 4.138 7 H 0.162 0.838 8 C -0.161 4.161 9 C 0.326 3.674 10 O -0.445 6.445 11 N -0.360 5.360 12 C 0.009 3.991 13 C 0.158 3.842 14 O -0.373 6.373 15 C -0.655 4.655 16 H 0.088 0.912 17 C -0.172 4.172 18 N -0.519 5.519 19 Si 0.866 3.134 20 H -0.203 1.203 21 H -0.206 1.206 22 H -0.198 1.198 23 C -0.068 4.068 24 C 0.252 3.748 25 C -0.248 4.248 26 O -0.308 6.308 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.217 0.783 37 H 0.085 0.915 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.116 0.884 41 H 0.107 0.893 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.653 -8.513 -0.566 24.207 hybrid contribution -0.121 0.713 -0.788 1.070 sum -22.774 -7.800 -1.354 24.111 Atomic orbital electron populations 1.21816 0.92323 1.03135 1.03680 1.23111 0.95538 0.79766 1.02961 1.86491 1.23805 1.32882 1.83968 1.22890 0.80947 0.91285 0.72919 1.90709 1.60336 1.42357 1.44252 1.21486 0.96972 0.91550 1.03776 0.83826 1.21375 0.91189 0.96748 1.06768 1.19811 0.81106 0.90223 0.76260 1.90630 1.58193 1.42727 1.52907 1.50068 1.03091 1.12683 1.70182 1.23237 0.85412 0.90256 1.00217 1.20402 0.93938 0.89711 0.80105 1.86385 1.67189 1.64425 1.19282 1.22181 0.95122 1.12768 1.35389 0.91155 1.25826 0.93106 1.02464 0.95794 1.70807 1.16150 1.29034 1.35879 0.84169 0.76346 0.76218 0.76710 1.20321 1.20563 1.19789 1.24781 0.83321 0.96812 1.01909 1.23996 0.87861 0.76895 0.86006 1.22181 0.95362 1.01965 1.05342 1.90464 1.54551 1.51695 1.34106 0.91282 0.90100 0.91361 0.90886 0.90999 0.87362 0.87258 0.90761 0.88947 0.78324 0.91547 0.88466 0.91441 0.88441 0.89273 0.89215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.29 37.16 0.38 -0.37 16 2 C 0.06 0.46 6.19 37.16 0.23 0.69 16 3 O -0.35 -3.51 10.14 -39.26 -0.40 -3.91 16 4 C 0.48 5.91 7.24 36.01 0.26 6.17 16 5 O -0.49 -7.23 15.67 -18.74 -0.29 -7.52 16 6 C -0.12 -1.53 2.22 -92.92 -0.21 -1.74 16 7 H 0.14 1.56 7.91 -51.93 -0.41 1.15 16 8 C -0.12 -1.89 3.97 -27.89 -0.11 -2.00 16 9 C 0.54 10.28 7.63 -10.98 -0.08 10.20 16 10 O -0.56 -11.63 15.71 5.56 0.09 -11.54 16 11 N -0.63 -12.81 3.61 -178.12 -0.64 -13.46 16 12 C 0.13 2.78 8.23 -2.96 -0.02 2.76 16 13 C 0.20 4.61 1.07 -90.84 -0.10 4.51 16 14 O -0.56 -13.46 13.47 -35.23 -0.47 -13.93 16 15 C -0.62 -15.97 9.04 -34.44 -0.31 -16.28 16 16 H 0.07 1.95 8.06 -52.49 -0.42 1.53 16 17 C 0.04 0.95 5.44 -17.82 -0.10 0.86 16 18 N -0.89 -25.13 13.70 55.43 0.76 -24.37 16 19 Si 1.04 22.46 24.56 -169.99 -4.17 18.29 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -5.54 5.81 56.52 0.33 -5.22 16 22 H -0.27 -5.37 6.48 56.52 0.37 -5.01 16 23 C 0.05 1.11 5.39 -2.83 -0.02 1.10 16 24 C 0.38 5.32 4.94 -29.04 -0.14 5.17 16 25 C -0.19 -1.87 10.25 36.01 0.37 -1.50 16 26 O -0.44 -7.85 16.54 5.99 0.10 -7.75 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 31 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 32 H 0.11 1.51 7.96 -51.93 -0.41 1.10 16 33 H 0.11 1.83 7.69 -51.93 -0.40 1.43 16 34 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.09 1.84 8.09 -51.93 -0.42 1.42 16 36 H 0.37 8.11 6.07 45.56 0.28 8.38 16 37 H 0.27 7.75 8.73 -40.82 -0.36 7.40 16 38 H 0.10 1.90 7.97 -51.93 -0.41 1.48 16 39 H 0.07 1.31 6.87 -51.93 -0.36 0.95 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.09 0.72 8.08 -51.93 -0.42 0.30 16 LS Contribution 357.21 15.07 5.38 5.38 Total: -1.00 -33.08 357.21 -5.12 -38.20 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -5.62 Total: 11.05 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: 0.15 Total: 9.57 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.12 Total: -37.83 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -0.98 Total: -44.66 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.17 Total: 18.29 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.08 -5.12 -38.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261738202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.652 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds