Wall clock time and date at job start Fri Apr 10 2020 18:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45193 * 109.47243 * 2 1 4 4 C 1.34229 * 117.00059 * 179.97438 * 3 2 1 5 5 O 1.20816 * 120.00182 * 359.97438 * 4 3 2 6 6 C 1.50708 * 120.00111 * 179.97438 * 4 3 2 7 7 H 1.09003 * 109.46515 * 299.99934 * 6 4 3 8 8 C 1.52993 * 109.47228 * 180.02562 * 6 4 3 9 9 C 1.50703 * 109.47262 * 175.00005 * 8 6 4 10 10 O 1.21276 * 119.99655 * 359.97438 * 9 8 6 11 11 N 1.34777 * 119.99851 * 179.97438 * 9 8 6 12 12 C 1.47585 * 134.48714 * 179.97438 * 11 9 8 13 13 C 1.53946 * 86.11303 * 155.35829 * 12 11 9 14 14 O 1.42897 * 113.74194 * 269.15036 * 13 12 11 15 15 C 1.50705 * 113.74193 * 137.95267 * 13 12 11 16 16 H 1.08000 * 119.99753 * 17.18899 * 15 13 12 17 17 C 1.37873 * 119.99893 * 197.19270 * 15 13 12 18 18 N 1.31512 * 119.99488 * 194.35249 * 17 15 13 19 19 Si 1.86797 * 120.00211 * 14.35029 * 17 15 13 20 20 H 1.48498 * 109.46923 * 180.02562 * 19 17 15 21 21 H 1.48497 * 109.47361 * 300.00177 * 19 17 15 22 22 H 1.48501 * 109.47273 * 60.00378 * 19 17 15 23 23 C 1.47807 * 134.46136 * 359.86744 * 11 9 8 24 24 C 1.50697 * 109.46926 * 59.99661 * 6 4 3 25 25 C 1.50699 * 120.00457 * 275.00017 * 24 6 4 26 26 O 1.20765 * 119.99913 * 95.00536 * 24 6 4 27 27 H 1.09005 * 109.47040 * 60.00317 * 1 2 3 28 28 H 1.09004 * 109.47286 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47180 * 300.00063 * 1 2 3 30 30 H 1.08997 * 109.47372 * 239.99419 * 2 1 3 31 31 H 1.09005 * 109.47040 * 119.99683 * 2 1 3 32 32 H 1.08997 * 109.47651 * 54.99519 * 8 6 4 33 33 H 1.09003 * 109.46991 * 294.99996 * 8 6 4 34 34 H 1.08992 * 113.77064 * 41.05629 * 12 11 9 35 35 H 1.08997 * 113.76476 * 269.65826 * 12 11 9 36 36 H 0.96694 * 114.00247 * 174.14979 * 14 13 12 37 37 H 0.97001 * 120.00716 * 354.86282 * 18 17 15 38 38 H 1.08994 * 113.77033 * 90.37473 * 23 11 9 39 39 H 1.09004 * 113.83092 * 318.91824 * 23 11 9 40 40 H 1.09000 * 109.47342 * 89.99874 * 25 24 6 41 41 H 1.08997 * 109.47489 * 210.00252 * 25 24 6 42 42 H 1.09005 * 109.47116 * 330.00291 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.5852 3.4689 -0.8905 8 6 5.4486 2.8573 0.0001 9 6 6.0244 4.2444 -0.1243 10 8 5.2854 5.2026 -0.2055 11 7 7.3605 4.4200 -0.1452 12 6 8.2477 5.5946 -0.2526 13 6 9.3032 4.7316 0.4623 14 8 9.2792 4.8552 1.8857 15 6 10.6886 4.8648 -0.1157 16 1 10.9295 5.7028 -0.7529 17 6 11.6484 3.9168 0.1690 18 7 12.9139 4.1644 -0.0893 19 14 11.1513 2.2811 0.9216 20 1 12.3602 1.4442 1.1297 21 1 10.4839 2.5190 2.2267 22 1 10.2146 1.5797 0.0072 23 6 8.5252 3.5133 -0.0677 24 6 3.4556 3.6738 1.2297 25 6 2.1245 4.3802 1.2267 26 8 4.1497 3.6980 2.2177 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 5.7807 2.2492 -0.8413 33 1 5.7886 2.4049 0.9317 34 1 7.9133 6.4525 0.3306 35 1 8.5125 5.8527 -1.2779 36 1 9.8784 4.2497 2.3433 37 1 13.1646 4.9816 -0.5477 38 1 8.8716 3.1592 -1.0386 39 1 8.4120 2.7123 0.6629 40 1 1.3484 3.6944 1.5665 41 1 2.1678 5.2399 1.8953 42 1 1.8943 4.7173 0.2159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261738202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:37 Heat of formation + Delta-G solvation = -192.917845 kcal Electronic energy + Delta-G solvation = -26885.188774 eV Core-core repulsion = 22831.384451 eV Total energy + Delta-G solvation = -4053.804323 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.26903 -41.35710 -40.46725 -39.17778 -37.91745 -36.03455 -34.66860 -34.59556 -32.58437 -31.50849 -30.44900 -28.08234 -27.10192 -26.14961 -24.17154 -22.76284 -21.96236 -20.95940 -20.07348 -19.92290 -19.15415 -18.28926 -18.11827 -17.63169 -17.34548 -17.09454 -16.74165 -16.46048 -16.00361 -15.68137 -15.45567 -15.26699 -14.98494 -14.69344 -14.52436 -14.42298 -13.93673 -13.84880 -13.64187 -13.54608 -13.08205 -13.01004 -12.96910 -12.92761 -12.85233 -12.50451 -12.47379 -12.18188 -11.83084 -11.78311 -11.56553 -11.35719 -11.12214 -10.92590 -10.86525 -10.36765 -9.74706 -8.83999 -6.60254 0.57164 0.94392 1.34796 1.41159 1.47263 1.48316 1.63206 1.89234 2.39812 2.82705 2.88626 3.10877 3.19887 3.47945 3.67300 3.73124 3.92502 4.02504 4.07201 4.11929 4.27547 4.29886 4.36327 4.36963 4.51656 4.56437 4.58151 4.63450 4.66115 4.73718 4.82176 4.96066 4.96171 5.10033 5.13152 5.36449 5.60066 5.90513 6.28819 6.39908 6.46819 6.64005 6.91239 6.93742 7.25027 8.51283 Molecular weight = 313.14amu Principal moments of inertia in cm(-1) A = 0.021079 B = 0.003533 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.996222 B = 7923.878952 C = 8666.056915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.346 6.346 4 C 0.488 3.512 5 O -0.517 6.517 6 C -0.119 4.119 7 H 0.169 0.831 8 C -0.116 4.116 9 C 0.533 3.467 10 O -0.580 6.580 11 N -0.632 5.632 12 C 0.128 3.872 13 C 0.188 3.812 14 O -0.575 6.575 15 C -0.619 4.619 16 H 0.036 0.964 17 C -0.006 4.006 18 N -0.919 5.919 19 Si 1.067 2.933 20 H -0.287 1.287 21 H -0.251 1.251 22 H -0.236 1.236 23 C 0.066 3.934 24 C 0.374 3.626 25 C -0.188 4.188 26 O -0.486 6.486 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.127 0.873 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.373 0.627 37 H 0.259 0.741 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.124 0.876 41 H 0.084 0.916 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.959 -9.580 -1.722 27.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.263 6.263 4 C 0.330 3.670 5 O -0.406 6.406 6 C -0.139 4.139 7 H 0.186 0.814 8 C -0.155 4.155 9 C 0.325 3.675 10 O -0.462 6.462 11 N -0.365 5.365 12 C 0.006 3.994 13 C 0.147 3.853 14 O -0.384 6.384 15 C -0.657 4.657 16 H 0.054 0.946 17 C -0.207 4.207 18 N -0.553 5.553 19 Si 0.887 3.113 20 H -0.213 1.213 21 H -0.176 1.176 22 H -0.159 1.159 23 C -0.056 4.056 24 C 0.251 3.749 25 C -0.245 4.245 26 O -0.361 6.361 27 H 0.093 0.907 28 H 0.117 0.883 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.145 0.855 33 H 0.117 0.883 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.224 0.776 37 H 0.068 0.932 38 H 0.127 0.873 39 H 0.103 0.897 40 H 0.142 0.858 41 H 0.103 0.897 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -25.847 -10.357 -0.792 27.856 hybrid contribution 0.803 1.394 -0.754 1.777 sum -25.043 -8.964 -1.547 26.644 Atomic orbital electron populations 1.21840 0.89945 1.04487 1.04068 1.23431 0.97345 0.78516 1.02957 1.86487 1.22147 1.34383 1.83248 1.22646 0.81609 0.90454 0.72249 1.90703 1.61128 1.43003 1.45759 1.21524 0.95369 0.92492 1.04531 0.81409 1.21336 0.93007 0.94218 1.06952 1.20416 0.80362 0.91521 0.75248 1.90613 1.58357 1.43763 1.53433 1.50042 1.03680 1.11951 1.70840 1.23189 0.85472 0.90329 1.00422 1.20425 0.92836 0.92372 0.79677 1.86370 1.67322 1.65097 1.19621 1.22265 0.97130 1.11579 1.34730 0.94575 1.27219 0.92319 1.05623 0.95528 1.70945 1.17675 1.28750 1.37964 0.83884 0.76887 0.72371 0.78186 1.21253 1.17646 1.15918 1.24620 0.82378 0.95936 1.02706 1.24734 0.88812 0.76064 0.85290 1.22252 0.93497 1.01905 1.06799 1.90453 1.56269 1.53668 1.35735 0.90736 0.88274 0.91097 0.90630 0.91406 0.85465 0.88270 0.91721 0.88000 0.77610 0.93172 0.87283 0.89667 0.85796 0.89708 0.87000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.29 71.98 0.74 -0.24 16 2 C 0.05 0.65 6.19 71.98 0.45 1.10 16 3 O -0.35 -5.88 10.14 -51.41 -0.52 -6.40 16 4 C 0.49 10.89 7.24 71.24 0.52 11.41 16 5 O -0.52 -14.23 15.67 21.99 0.34 -13.88 16 6 C -0.12 -2.81 2.22 -12.29 -0.03 -2.84 16 7 H 0.17 3.10 7.91 -2.39 -0.02 3.08 16 8 C -0.12 -3.37 3.97 29.85 0.12 -3.25 16 9 C 0.53 19.55 7.63 87.66 0.67 20.21 16 10 O -0.58 -23.09 15.71 -3.02 -0.05 -23.13 16 11 N -0.63 -24.84 3.61 -839.67 -3.03 -27.87 16 12 C 0.13 5.43 8.23 86.49 0.71 6.14 16 13 C 0.19 8.54 1.07 -10.87 -0.01 8.53 16 14 O -0.57 -26.91 13.47 -148.98 -2.01 -28.92 16 15 C -0.62 -32.52 9.04 25.60 0.23 -32.29 16 16 H 0.04 2.09 8.06 -2.91 -0.02 2.06 16 17 C -0.01 -0.29 5.44 84.65 0.46 0.17 16 18 N -0.92 -53.43 13.70 21.45 0.29 -53.13 16 19 Si 1.07 43.46 24.56 68.60 1.68 45.15 16 20 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.25 -9.09 5.81 99.48 0.58 -8.51 16 22 H -0.24 -8.22 6.48 99.48 0.64 -7.58 16 23 C 0.07 2.55 5.39 86.45 0.47 3.01 16 24 C 0.37 9.81 4.94 29.10 0.14 9.95 16 25 C -0.19 -3.14 10.25 71.24 0.73 -2.41 16 26 O -0.49 -17.14 16.54 -1.46 -0.02 -17.16 16 27 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 28 H 0.10 0.33 8.14 -2.38 -0.02 0.32 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.08 0.95 8.13 -2.39 -0.02 0.93 16 31 H 0.07 0.94 8.13 -2.38 -0.02 0.92 16 32 H 0.13 3.19 7.96 -2.39 -0.02 3.18 16 33 H 0.10 3.15 7.69 -2.39 -0.02 3.13 16 34 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.10 4.05 8.09 -2.39 -0.02 4.03 16 36 H 0.37 15.95 6.07 -74.06 -0.45 15.50 16 37 H 0.26 15.32 8.73 -92.71 -0.81 14.51 16 38 H 0.11 3.95 7.97 -2.39 -0.02 3.93 16 39 H 0.09 3.00 6.87 -2.38 -0.02 2.98 16 40 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.11 1.38 8.08 -2.38 -0.02 1.36 16 Total: -1.00 -73.08 357.21 2.25 -70.84 By element: Atomic # 1 Polarization: 34.67 SS G_CDS: 0.36 Total: 35.04 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: 5.19 Total: 19.48 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -2.74 Total: -81.01 kcal Atomic # 8 Polarization: -87.24 SS G_CDS: -2.25 Total: -89.49 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.68 Total: 45.15 kcal Total: -73.08 2.25 -70.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261738202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.079 kcal (2) G-P(sol) polarization free energy of solvation -73.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds