Wall clock time and date at job start Fri Apr 10 2020 18:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34774 * 120.00210 * 2 1 4 4 S 1.71195 * 120.00235 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99773 * 180.02562 * 3 2 1 6 6 C 1.47663 * 134.45465 * 179.97438 * 5 3 2 7 7 C 1.53504 * 85.98199 * 155.69617 * 6 5 3 8 8 C 1.47667 * 134.46212 * 0.02562 * 5 3 2 9 9 C 1.52775 * 113.51507 * 269.06188 * 7 6 5 10 10 O 1.43385 * 108.24369 * 273.83821 * 9 7 6 11 11 C 1.42825 * 113.34170 * 294.36606 * 10 9 7 12 12 C 1.50280 * 110.49715 * 51.30535 * 11 10 9 13 13 O 1.21282 * 118.96933 * 161.60073 * 12 11 10 14 14 N 1.34274 * 122.05565 * 341.62017 * 12 11 10 15 15 C 1.46503 * 119.37732 * 181.94524 * 14 12 11 16 16 C 1.52998 * 109.47005 * 90.00134 * 15 14 12 17 17 C 1.50697 * 109.47130 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99936 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00401 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99663 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00484 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46630 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.46928 * 119.99810 * 21 19 17 24 24 H 1.48502 * 109.47398 * 240.00140 * 21 19 17 25 25 H 1.08997 * 109.47073 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46481 * 300.00278 * 1 2 3 27 27 H 1.08997 * 109.46905 * 60.00156 * 1 2 3 28 28 H 0.97001 * 119.99694 * 179.97438 * 2 1 3 29 29 H 1.09004 * 113.79402 * 41.43656 * 6 5 3 30 30 H 1.08996 * 113.79359 * 269.96069 * 6 5 3 31 31 H 1.08993 * 113.78437 * 90.03898 * 8 5 3 32 32 H 1.08998 * 113.79058 * 318.57950 * 8 5 3 33 33 H 1.08996 * 109.72519 * 154.14324 * 9 7 6 34 34 H 1.08996 * 109.70006 * 33.51672 * 9 7 6 35 35 H 1.09004 * 109.26498 * 171.56726 * 11 10 9 36 36 H 1.09002 * 109.27186 * 291.03856 * 11 10 9 37 37 H 1.09000 * 109.46616 * 210.00120 * 15 14 12 38 38 H 1.08999 * 109.47298 * 330.00132 * 15 14 12 39 39 H 1.09002 * 109.46916 * 299.99530 * 16 15 14 40 40 H 1.09004 * 109.47246 * 59.99411 * 16 15 14 41 41 H 0.97007 * 119.99893 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 16 1.2831 2.6498 -0.0007 5 7 3.4868 1.1671 -0.0005 6 6 4.5210 2.2210 -0.0012 7 6 5.4420 1.1669 0.6290 8 6 4.5210 0.1131 -0.0016 9 6 5.4138 1.1677 2.1564 10 8 6.3628 2.1363 2.6224 11 6 7.7152 1.7989 2.3108 12 6 7.8542 1.4784 0.8492 13 8 8.9570 1.5016 0.3450 14 7 6.7955 1.1676 0.0839 15 6 7.0034 0.8232 -1.3248 16 6 7.2224 -0.6855 -1.4540 17 6 7.4369 -1.0397 -2.9030 18 1 7.4184 -0.2661 -3.6564 19 6 7.6567 -2.3512 -3.2669 20 7 7.6797 -3.2931 -2.3493 21 14 7.9218 -2.7904 -5.0631 22 1 7.8484 -1.5588 -5.8897 23 1 9.2574 -3.4184 -5.2271 24 1 6.8698 -3.7429 -5.5003 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.9500 -0.8401 0.0004 29 1 4.2956 3.0587 0.6588 30 1 4.8291 2.5342 -0.9987 31 1 4.8290 -0.1995 -0.9993 32 1 4.2954 -0.7250 0.6577 33 1 5.6834 0.1798 2.5299 34 1 4.4160 1.4334 2.5054 35 1 8.3619 2.6409 2.5576 36 1 8.0144 0.9316 2.8994 37 1 6.1264 1.1140 -1.9031 38 1 7.8790 1.3511 -1.7025 39 1 8.0995 -0.9761 -0.8757 40 1 6.3468 -1.2134 -1.0762 41 1 7.8348 -4.2159 -2.6053 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275757295.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:56 Heat of formation + Delta-G solvation = -10.865155 kcal Electronic energy + Delta-G solvation = -24968.649187 eV Core-core repulsion = 21397.784883 eV Total energy + Delta-G solvation = -3570.864304 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -41.69931 -39.46276 -37.72227 -37.23659 -35.02078 -33.17893 -31.17060 -30.10815 -28.65423 -27.33846 -26.72727 -25.72541 -24.45679 -23.14432 -21.43677 -20.93632 -18.64730 -18.38962 -17.94504 -17.44159 -16.88446 -16.30581 -15.82484 -15.69413 -15.34789 -14.92858 -14.73393 -14.51886 -14.32135 -13.91796 -13.86495 -13.50430 -13.19447 -12.64656 -12.53589 -12.47105 -12.13149 -11.98934 -11.75363 -11.55312 -11.21037 -11.09124 -11.01211 -10.85460 -10.59171 -10.15912 -10.09173 -9.54766 -9.29140 -9.03832 -8.55003 -8.45804 -7.82274 -7.54352 -6.20847 -4.24461 1.35696 1.72366 2.36294 2.59359 2.89099 3.09676 3.19061 3.28057 3.31880 3.42271 3.99570 4.09757 4.26618 4.32413 4.43252 4.80830 4.91739 4.99111 5.07115 5.14442 5.16464 5.17608 5.28059 5.33271 5.38890 5.40971 5.59333 5.61073 5.77367 6.24370 6.25752 6.38291 6.52499 6.54458 6.62849 7.18578 7.29214 7.45563 7.60874 7.77182 8.11407 8.24020 8.81719 9.41293 10.90166 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.010321 B = 0.005131 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.261370 B = 5455.766576 C = 7472.405747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.690 5.690 3 C 0.597 3.403 4 S -0.661 6.661 5 N -0.604 5.604 6 C 0.126 3.874 7 C 0.106 3.894 8 C 0.078 3.922 9 C 0.075 3.925 10 O -0.363 6.363 11 C 0.046 3.954 12 C 0.487 3.513 13 O -0.525 6.525 14 N -0.585 5.585 15 C 0.108 3.892 16 C 0.013 3.987 17 C -0.524 4.524 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.892 5.892 21 Si 0.894 3.106 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.284 1.284 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.400 0.600 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.131 0.869 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.131 0.869 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.024 0.976 40 H 0.018 0.982 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.213 4.052 10.221 14.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.319 5.319 3 C 0.239 3.761 4 S -0.533 6.533 5 N -0.316 5.316 6 C 0.002 3.998 7 C 0.017 3.983 8 C -0.047 4.047 9 C -0.002 4.002 10 O -0.281 6.281 11 C -0.034 4.034 12 C 0.274 3.726 13 O -0.401 6.401 14 N -0.318 5.318 15 C -0.012 4.012 16 C -0.025 4.025 17 C -0.562 4.562 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.721 3.279 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.210 1.210 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.236 0.764 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.149 0.851 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.135 0.865 35 H 0.149 0.851 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.042 0.958 40 H 0.036 0.964 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.436 4.984 10.073 14.674 hybrid contribution 0.790 -1.984 -1.280 2.490 sum -8.646 2.999 8.793 12.691 Atomic orbital electron populations 1.21867 0.75803 1.02601 1.04621 1.44786 1.09010 1.05761 1.72365 1.21704 0.82459 0.91887 0.80033 1.93462 1.67580 1.16699 1.75593 1.48895 1.01009 1.12693 1.68967 1.23852 0.80165 0.92581 1.03155 1.22480 0.83357 0.96589 0.95862 1.24365 0.83128 0.92414 1.04826 1.22719 0.94995 0.94033 0.88492 1.88178 1.14963 1.46538 1.78427 1.22870 0.84680 1.04207 0.91617 1.20976 0.84702 0.77286 0.89654 1.90778 1.24599 1.51468 1.73271 1.47719 1.04025 1.67326 1.12702 1.22055 1.01582 1.00587 0.76989 1.19486 0.97579 0.87764 0.97669 1.21091 1.49761 0.93057 0.92337 0.92354 1.24970 0.94962 0.96481 0.97624 1.69962 1.49448 1.00822 1.32875 0.86509 0.77933 0.78559 0.84883 1.19584 1.20824 1.20983 0.90192 0.90382 0.90351 0.76398 0.87328 0.87736 0.85150 0.88690 0.90778 0.86491 0.85116 0.89240 0.91683 0.89844 0.95786 0.96427 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.74 10.16 59.85 0.61 1.35 16 2 N -0.69 -6.54 5.72 -68.84 -0.39 -6.94 16 3 C 0.60 7.57 8.09 -86.92 -0.70 6.87 16 4 S -0.66 -11.01 29.02 -107.50 -3.12 -14.13 16 5 N -0.60 -7.01 3.49 -182.48 -0.64 -7.65 16 6 C 0.13 1.49 7.55 -3.15 -0.02 1.47 16 7 C 0.11 1.25 1.50 -135.75 -0.20 1.05 16 8 C 0.08 0.89 6.63 -3.15 -0.02 0.87 16 9 C 0.08 0.74 5.99 37.04 0.22 0.96 16 10 O -0.36 -4.05 10.84 -35.23 -0.38 -4.44 16 11 C 0.05 0.52 6.94 35.80 0.25 0.77 16 12 C 0.49 7.75 7.64 -11.41 -0.09 7.67 16 13 O -0.53 -10.62 16.45 5.56 0.09 -10.53 16 14 N -0.58 -8.89 2.66 -162.63 -0.43 -9.32 16 15 C 0.11 1.98 4.43 -4.04 -0.02 1.96 16 16 C 0.01 0.29 4.93 -27.89 -0.14 0.15 16 17 C -0.52 -13.58 9.11 -34.44 -0.31 -13.89 16 18 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -24.91 13.29 55.43 0.74 -24.17 16 21 Si 0.89 20.56 29.54 -169.99 -5.02 15.53 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.67 7.99 -51.93 -0.42 0.25 16 27 H 0.08 0.72 7.99 -51.93 -0.41 0.30 16 28 H 0.40 3.02 8.44 -40.82 -0.34 2.68 16 29 H 0.11 1.28 8.09 -51.93 -0.42 0.86 16 30 H 0.10 1.30 7.22 -51.93 -0.38 0.92 16 31 H 0.13 1.83 5.01 -51.93 -0.26 1.57 16 32 H 0.09 0.87 8.09 -51.93 -0.42 0.45 16 33 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 34 H 0.12 1.03 7.97 -51.93 -0.41 0.62 16 35 H 0.13 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 1.09 6.31 -51.93 -0.33 0.76 16 38 H 0.08 1.70 7.30 -51.93 -0.38 1.33 16 39 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.02 0.39 6.02 -51.93 -0.31 0.08 16 41 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 347.93 15.07 5.24 5.24 Total: -1.00 -34.14 347.93 -10.18 -44.32 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -5.74 Total: 1.30 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -0.53 Total: 10.78 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -0.72 Total: -48.08 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.29 Total: -14.96 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: -11.01 SS G_CDS: -3.12 Total: -14.13 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.14 -10.18 -44.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275757295.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.451 kcal (2) G-P(sol) polarization free energy of solvation -34.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds