Wall clock time and date at job start Fri Apr 10 2020 18:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34774 * 120.00210 * 2 1 4 4 S 1.71195 * 120.00235 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99773 * 180.02562 * 3 2 1 6 6 C 1.47663 * 134.45465 * 179.97438 * 5 3 2 7 7 C 1.53504 * 85.98199 * 155.69617 * 6 5 3 8 8 C 1.47667 * 134.46212 * 0.02562 * 5 3 2 9 9 C 1.52775 * 113.51507 * 269.06188 * 7 6 5 10 10 O 1.43385 * 108.24369 * 273.83821 * 9 7 6 11 11 C 1.42825 * 113.34170 * 294.36606 * 10 9 7 12 12 C 1.50280 * 110.49715 * 51.30535 * 11 10 9 13 13 O 1.21282 * 118.96933 * 161.60073 * 12 11 10 14 14 N 1.34274 * 122.05565 * 341.62017 * 12 11 10 15 15 C 1.46503 * 119.37732 * 181.94524 * 14 12 11 16 16 C 1.52998 * 109.47005 * 90.00134 * 15 14 12 17 17 C 1.50697 * 109.47130 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99936 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00401 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99663 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00484 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46630 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.46928 * 119.99810 * 21 19 17 24 24 H 1.48502 * 109.47398 * 240.00140 * 21 19 17 25 25 H 1.08997 * 109.47073 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46481 * 300.00278 * 1 2 3 27 27 H 1.08997 * 109.46905 * 60.00156 * 1 2 3 28 28 H 0.97001 * 119.99694 * 179.97438 * 2 1 3 29 29 H 1.09004 * 113.79402 * 41.43656 * 6 5 3 30 30 H 1.08996 * 113.79359 * 269.96069 * 6 5 3 31 31 H 1.08993 * 113.78437 * 90.03898 * 8 5 3 32 32 H 1.08998 * 113.79058 * 318.57950 * 8 5 3 33 33 H 1.08996 * 109.72519 * 154.14324 * 9 7 6 34 34 H 1.08996 * 109.70006 * 33.51672 * 9 7 6 35 35 H 1.09004 * 109.26498 * 171.56726 * 11 10 9 36 36 H 1.09002 * 109.27186 * 291.03856 * 11 10 9 37 37 H 1.09000 * 109.46616 * 210.00120 * 15 14 12 38 38 H 1.08999 * 109.47298 * 330.00132 * 15 14 12 39 39 H 1.09002 * 109.46916 * 299.99530 * 16 15 14 40 40 H 1.09004 * 109.47246 * 59.99411 * 16 15 14 41 41 H 0.97007 * 119.99893 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 16 1.2831 2.6498 -0.0007 5 7 3.4868 1.1671 -0.0005 6 6 4.5210 2.2210 -0.0012 7 6 5.4420 1.1669 0.6290 8 6 4.5210 0.1131 -0.0016 9 6 5.4138 1.1677 2.1564 10 8 6.3628 2.1363 2.6224 11 6 7.7152 1.7989 2.3108 12 6 7.8542 1.4784 0.8492 13 8 8.9570 1.5016 0.3450 14 7 6.7955 1.1676 0.0839 15 6 7.0034 0.8232 -1.3248 16 6 7.2224 -0.6855 -1.4540 17 6 7.4369 -1.0397 -2.9030 18 1 7.4184 -0.2661 -3.6564 19 6 7.6567 -2.3512 -3.2669 20 7 7.6797 -3.2931 -2.3493 21 14 7.9218 -2.7904 -5.0631 22 1 7.8484 -1.5588 -5.8897 23 1 9.2574 -3.4184 -5.2271 24 1 6.8698 -3.7429 -5.5003 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.9500 -0.8401 0.0004 29 1 4.2956 3.0587 0.6588 30 1 4.8291 2.5342 -0.9987 31 1 4.8290 -0.1995 -0.9993 32 1 4.2954 -0.7250 0.6577 33 1 5.6834 0.1798 2.5299 34 1 4.4160 1.4334 2.5054 35 1 8.3619 2.6409 2.5576 36 1 8.0144 0.9316 2.8994 37 1 6.1264 1.1140 -1.9031 38 1 7.8790 1.3511 -1.7025 39 1 8.0995 -0.9761 -0.8757 40 1 6.3468 -1.2134 -1.0762 41 1 7.8348 -4.2159 -2.6053 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275757295.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:50 Heat of formation + Delta-G solvation = -35.133424 kcal Electronic energy + Delta-G solvation = -24969.701538 eV Core-core repulsion = 21397.784883 eV Total energy + Delta-G solvation = -3571.916655 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.76340 -40.60240 -38.77974 -38.17585 -36.42968 -34.97548 -32.40899 -31.55887 -29.58932 -28.38042 -27.92785 -26.59295 -26.01422 -24.19017 -23.07961 -22.06239 -19.68212 -19.51046 -18.92623 -18.60810 -18.39470 -17.65072 -16.95862 -16.71077 -16.53876 -16.29993 -15.82451 -15.66991 -15.50939 -15.03589 -14.91427 -14.75371 -14.32362 -14.28234 -13.76425 -13.52294 -13.20425 -13.06794 -13.04158 -12.90826 -12.63249 -12.51991 -12.28328 -12.18378 -11.92502 -11.87077 -11.56749 -11.37617 -10.59018 -10.54806 -9.99658 -9.82482 -9.05206 -8.83158 -8.25145 -6.34693 0.32194 0.66121 1.28062 1.36536 1.36895 1.40729 1.50869 1.80252 2.18470 2.38513 2.51823 3.04427 3.10060 3.13113 3.28546 3.42530 3.99922 4.07241 4.13041 4.21290 4.28449 4.37473 4.39086 4.43121 4.46741 4.53208 4.61160 4.63429 4.65957 4.84986 4.96091 5.05508 5.39887 5.44806 5.54487 5.62563 5.68062 5.79964 6.15572 6.26562 6.35606 6.78872 6.97089 7.34675 8.86019 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.010321 B = 0.005131 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.261370 B = 5455.766576 C = 7472.405747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.670 5.670 3 C 0.613 3.387 4 S -0.741 6.741 5 N -0.594 5.594 6 C 0.125 3.875 7 C 0.107 3.893 8 C 0.085 3.915 9 C 0.078 3.922 10 O -0.364 6.364 11 C 0.058 3.942 12 C 0.478 3.522 13 O -0.578 6.578 14 N -0.585 5.585 15 C 0.126 3.874 16 C 0.026 3.974 17 C -0.541 4.541 18 H 0.057 0.943 19 C 0.013 3.987 20 N -0.924 5.924 21 Si 0.955 3.045 22 H -0.266 1.266 23 H -0.284 1.284 24 H -0.275 1.275 25 H 0.119 0.881 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.415 0.585 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.126 0.874 33 H 0.094 0.906 34 H 0.135 0.865 35 H 0.149 0.851 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.058 0.942 39 H -0.020 1.020 40 H 0.024 0.976 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.268 3.093 11.075 15.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.299 5.299 3 C 0.250 3.750 4 S -0.614 6.614 5 N -0.305 5.305 6 C 0.002 3.998 7 C 0.019 3.981 8 C -0.040 4.040 9 C 0.001 3.999 10 O -0.281 6.281 11 C -0.022 4.022 12 C 0.268 3.732 13 O -0.457 6.457 14 N -0.316 5.316 15 C 0.004 3.996 16 C -0.012 4.012 17 C -0.580 4.580 18 H 0.076 0.924 19 C -0.186 4.186 20 N -0.564 5.564 21 Si 0.780 3.220 22 H -0.190 1.190 23 H -0.210 1.210 24 H -0.200 1.200 25 H 0.137 0.863 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.253 0.747 29 H 0.130 0.870 30 H 0.114 0.886 31 H 0.125 0.875 32 H 0.144 0.856 33 H 0.112 0.888 34 H 0.152 0.848 35 H 0.167 0.833 36 H 0.131 0.869 37 H 0.100 0.900 38 H 0.076 0.924 39 H -0.001 1.001 40 H 0.042 0.958 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.535 4.002 10.945 15.710 hybrid contribution 1.114 -1.752 -1.547 2.589 sum -9.421 2.250 9.398 13.496 Atomic orbital electron populations 1.22038 0.74533 1.04879 1.03643 1.44868 1.09828 1.05249 1.69930 1.21244 0.82377 0.91451 0.79891 1.93641 1.68801 1.19962 1.79006 1.48777 1.00654 1.12795 1.68323 1.23829 0.80251 0.92858 1.02870 1.22749 0.81257 0.96685 0.97389 1.24280 0.82548 0.93083 1.04123 1.22898 0.95677 0.94952 0.86416 1.88198 1.14821 1.47106 1.78003 1.22889 0.85360 1.05923 0.87983 1.21960 0.83833 0.75974 0.91477 1.90752 1.26622 1.53745 1.74612 1.47669 1.05704 1.66745 1.11468 1.21541 1.01211 0.97314 0.79535 1.19284 0.95716 0.90654 0.95514 1.21510 1.49338 0.93245 0.93894 0.92434 1.25745 0.94797 0.96549 1.01542 1.70055 1.50438 1.01162 1.34721 0.85553 0.77763 0.78426 0.80254 1.19031 1.20984 1.20001 0.86260 0.90925 0.91750 0.74658 0.86997 0.88592 0.87545 0.85578 0.88826 0.84758 0.83340 0.86907 0.90001 0.92393 1.00123 0.95812 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.23 10.16 127.77 1.30 2.53 16 2 N -0.67 -10.91 5.72 -371.70 -2.12 -13.03 16 3 C 0.61 14.45 8.09 179.05 1.45 15.90 16 4 S -0.74 -24.53 29.02 -56.49 -1.64 -26.17 16 5 N -0.59 -12.63 3.49 -731.24 -2.55 -15.18 16 6 C 0.13 2.81 7.55 86.32 0.65 3.46 16 7 C 0.11 2.32 1.50 5.39 0.01 2.32 16 8 C 0.09 1.74 6.63 86.32 0.57 2.31 16 9 C 0.08 1.27 5.99 71.91 0.43 1.71 16 10 O -0.36 -7.00 10.84 -148.98 -1.61 -8.61 16 11 C 0.06 1.18 6.94 71.10 0.49 1.67 16 12 C 0.48 15.02 7.64 87.60 0.67 15.69 16 13 O -0.58 -23.96 16.45 -3.04 -0.05 -24.01 16 14 N -0.58 -17.45 2.66 -787.11 -2.09 -19.54 16 15 C 0.13 4.69 4.43 86.38 0.38 5.07 16 16 C 0.03 1.22 4.93 29.85 0.15 1.36 16 17 C -0.54 -28.36 9.11 25.60 0.23 -28.13 16 18 H 0.06 2.95 7.74 -2.91 -0.02 2.93 16 19 C 0.01 0.68 5.46 84.65 0.46 1.14 16 20 N -0.92 -51.78 13.29 21.45 0.28 -51.50 16 21 Si 0.95 42.00 29.54 68.60 2.03 44.02 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.07 1.11 7.99 -2.39 -0.02 1.09 16 27 H 0.06 1.10 7.99 -2.39 -0.02 1.08 16 28 H 0.42 4.76 8.44 -92.71 -0.78 3.98 16 29 H 0.11 2.49 8.09 -2.38 -0.02 2.47 16 30 H 0.10 2.34 7.22 -2.39 -0.02 2.32 16 31 H 0.11 2.82 5.01 -2.39 -0.01 2.81 16 32 H 0.13 1.83 8.09 -2.39 -0.02 1.82 16 33 H 0.09 1.25 8.13 -2.39 -0.02 1.23 16 34 H 0.13 1.84 7.97 -2.39 -0.02 1.82 16 35 H 0.15 2.56 8.14 -2.38 -0.02 2.54 16 36 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.08 2.75 6.31 -2.39 -0.02 2.74 16 38 H 0.06 2.46 7.30 -2.39 -0.02 2.45 16 39 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 40 H 0.02 1.06 6.02 -2.38 -0.01 1.05 16 41 H 0.26 13.97 8.31 -92.70 -0.77 13.20 16 Total: -1.00 -76.73 347.93 -0.68 -77.42 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.28 Total: 11.57 kcal Atomic # 6 Polarization: 18.24 SS G_CDS: 6.80 Total: 25.03 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -6.48 Total: -99.25 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -1.66 Total: -32.62 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 16 Polarization: -24.53 SS G_CDS: -1.64 Total: -26.17 kcal Total: -76.73 -0.68 -77.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275757295.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.282 kcal (2) G-P(sol) polarization free energy of solvation -76.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds