Wall clock time and date at job start Fri Apr 10 2020 18:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99830 * 2 1 4 4 H 1.48497 * 109.47110 * 269.99639 * 3 2 1 5 5 H 1.48497 * 109.47133 * 29.99521 * 3 2 1 6 6 H 1.48506 * 109.46908 * 149.99691 * 3 2 1 7 7 C 1.37872 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00299 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99835 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46985 * 180.02562 * 9 7 2 11 11 C 1.34770 * 120.00022 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99951 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.00366 * 179.97438 * 11 10 9 14 14 O 1.45202 * 109.47481 * 179.97438 * 13 11 10 15 15 C 1.34222 * 117.00025 * 179.97438 * 14 13 11 16 16 O 1.20826 * 120.00250 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.99915 * 180.02562 * 15 14 13 18 18 H 1.08996 * 109.50216 * 59.94055 * 17 15 14 19 19 C 1.53048 * 109.49614 * 180.02562 * 17 15 14 20 20 C 1.53040 * 109.53641 * 181.31595 * 19 17 15 21 21 C 1.53198 * 109.31268 * 298.63405 * 20 19 17 22 22 N 1.46925 * 108.77332 * 54.63430 * 21 20 19 23 23 C 1.34777 * 120.62725 * 126.37173 * 22 21 20 24 24 N 1.34772 * 120.00143 * 5.22146 * 23 22 21 25 25 O 1.21587 * 120.00151 * 185.22272 * 23 22 21 26 26 C 1.46919 * 118.74063 * 306.64341 * 22 21 20 27 27 H 0.97002 * 119.99579 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47228 * 59.99846 * 9 7 2 29 29 H 1.09002 * 109.46855 * 299.99871 * 9 7 2 30 30 H 0.97001 * 119.99840 * 359.97438 * 10 9 7 31 31 H 1.09003 * 109.46964 * 59.99745 * 13 11 10 32 32 H 1.08995 * 109.47204 * 299.99895 * 13 11 10 33 33 H 1.08997 * 109.46246 * 61.29784 * 19 17 15 34 34 H 1.08994 * 109.44752 * 301.32814 * 19 17 15 35 35 H 1.08998 * 109.49946 * 178.68669 * 20 19 17 36 36 H 1.09004 * 109.49964 * 58.58145 * 20 19 17 37 37 H 1.09004 * 109.58640 * 294.84958 * 21 20 19 38 38 H 1.09003 * 109.70300 * 174.49081 * 21 20 19 39 39 H 0.97000 * 120.00175 * 175.02582 * 24 23 22 40 40 H 0.97006 * 120.00284 * 354.74693 * 24 23 22 41 41 H 1.09004 * 109.58744 * 173.15042 * 26 22 21 42 42 H 1.09005 * 109.58981 * 293.56914 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7538 -4.8833 0.0015 12 8 0.5615 -5.1049 0.0006 13 6 2.7331 -6.0288 0.0022 14 8 2.0071 -7.2863 0.0023 15 6 2.7381 -8.4119 0.0023 16 8 3.9447 -8.3487 0.0028 17 6 2.0540 -9.7547 0.0019 18 1 1.4305 -9.8451 -0.8876 19 6 3.1076 -10.8648 0.0027 20 6 2.4140 -12.2286 -0.0309 21 6 1.5449 -12.3860 1.2208 22 7 0.6252 -11.2432 1.3046 23 6 -0.7029 -11.4381 1.4253 24 7 -1.1900 -12.6856 1.5760 25 8 -1.4617 -10.4884 1.3982 26 6 1.1803 -9.8841 1.2483 27 1 -0.4849 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6241 -2.5566 0.8903 30 1 3.1567 -3.4354 0.0021 31 1 3.3592 -5.9710 0.8926 32 1 3.3603 -5.9711 -0.8874 33 1 3.7149 -10.7884 0.9046 34 1 3.7456 -10.7601 -0.8748 35 1 3.1651 -13.0182 -0.0538 36 1 1.7870 -12.2961 -0.9200 37 1 2.1802 -12.4094 2.1062 38 1 0.9727 -13.3116 1.1569 39 1 -2.1373 -12.8205 1.7350 40 1 -0.5939 -13.4490 1.5214 41 1 0.3677 -9.1592 1.2001 42 1 1.7853 -9.6993 2.1360 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317739416.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:11 Heat of formation + Delta-G solvation = -183.467272 kcal Electronic energy + Delta-G solvation = -25715.710440 eV Core-core repulsion = 21694.608675 eV Total energy + Delta-G solvation = -4021.101764 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.09510 -41.21350 -40.41141 -38.52109 -37.51362 -36.20286 -35.15788 -34.43240 -33.40210 -32.52135 -30.75584 -28.55851 -26.48847 -25.68384 -24.55710 -23.01112 -21.68482 -21.62781 -20.59019 -19.52881 -19.20425 -18.83338 -18.07409 -17.90324 -17.68434 -17.10498 -16.92231 -16.51702 -16.20535 -15.97673 -15.73480 -15.40504 -15.36441 -14.73148 -14.48107 -14.40287 -14.18765 -14.10802 -13.92851 -13.67106 -13.47189 -12.94715 -12.72376 -12.62858 -12.23718 -12.08642 -12.02460 -11.92381 -11.74535 -11.66968 -11.51010 -11.31509 -10.92507 -10.82867 -10.73253 -9.95061 -9.69760 -8.30343 -6.47474 0.94134 1.20547 1.43736 1.45883 1.53987 1.57370 1.74716 2.09259 2.33139 2.55266 3.04757 3.21453 3.45906 3.61017 3.66178 3.72520 3.96397 4.00849 4.04435 4.07707 4.13537 4.49994 4.53103 4.68877 4.71569 4.86533 5.01374 5.05559 5.11556 5.19886 5.20973 5.35237 5.40503 5.42597 5.61859 5.79243 5.80753 5.99926 6.50517 6.61789 6.77042 6.90131 7.19526 7.35122 7.59674 8.81943 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.024805 B = 0.002328 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.552574 B =12022.142331 C =13004.226823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.254 1.254 7 C -0.556 4.556 8 H 0.088 0.912 9 C 0.266 3.734 10 N -0.698 5.698 11 C 0.497 3.503 12 O -0.585 6.585 13 C 0.060 3.940 14 O -0.350 6.350 15 C 0.471 3.529 16 O -0.515 6.515 17 C -0.087 4.087 18 H 0.114 0.886 19 C -0.100 4.100 20 C -0.127 4.127 21 C 0.101 3.899 22 N -0.623 5.623 23 C 0.699 3.301 24 N -0.844 5.844 25 O -0.646 6.646 26 C 0.139 3.861 27 H 0.269 0.731 28 H -0.009 1.009 29 H -0.009 1.009 30 H 0.413 0.587 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.420 0.580 40 H 0.414 0.586 41 H 0.072 0.928 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.087 -31.816 1.903 33.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.594 4.594 8 H 0.106 0.894 9 C 0.143 3.857 10 N -0.350 5.350 11 C 0.282 3.718 12 O -0.466 6.466 13 C -0.017 4.017 14 O -0.266 6.266 15 C 0.314 3.686 16 O -0.404 6.404 17 C -0.107 4.107 18 H 0.132 0.868 19 C -0.137 4.137 20 C -0.165 4.165 21 C -0.020 4.020 22 N -0.361 5.361 23 C 0.399 3.601 24 N -0.416 5.416 25 O -0.528 6.528 26 C 0.015 3.985 27 H 0.078 0.922 28 H 0.009 0.991 29 H 0.009 0.991 30 H 0.250 0.750 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.133 0.867 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.128 0.872 39 H 0.253 0.747 40 H 0.248 0.752 41 H 0.091 0.909 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.102 -31.123 1.890 32.482 hybrid contribution 0.035 1.115 -0.085 1.119 sum 9.137 -30.008 1.805 31.420 Atomic orbital electron populations 1.70148 1.08335 1.28649 1.49850 1.26097 0.95789 1.04013 0.93821 0.85120 0.78469 0.76790 0.78607 1.19574 1.21045 1.17788 1.21608 0.94449 0.90292 1.53043 0.89448 1.18631 0.88619 0.83927 0.94489 1.46029 1.11706 1.04682 1.72555 1.20777 0.89345 0.84838 0.76792 1.90712 1.19111 1.85325 1.51409 1.22767 0.92463 0.79160 1.07294 1.86610 1.41667 1.14793 1.83498 1.24041 0.86337 0.86562 0.71615 1.90652 1.15707 1.87965 1.46030 1.21472 0.99155 0.87899 1.02174 0.86816 1.21485 0.95604 0.92149 1.04496 1.21952 0.99855 0.96656 0.98002 1.22100 0.92432 0.87786 0.99706 1.47191 1.04502 1.07421 1.76983 1.16160 0.82316 0.84282 0.77381 1.42904 1.14218 1.05412 1.79026 1.91005 1.58266 1.42966 1.60572 1.21090 0.97055 0.84255 0.96130 0.92202 0.99112 0.99130 0.75043 0.85548 0.85582 0.90202 0.90298 0.86668 0.91165 0.89194 0.87181 0.74701 0.75229 0.90916 0.89909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.99 42.47 29.54 68.60 2.03 44.49 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.56 -30.27 9.28 25.60 0.24 -30.03 16 8 H 0.09 4.24 7.60 -2.91 -0.02 4.22 16 9 C 0.27 14.75 5.43 85.63 0.46 15.22 16 10 N -0.70 -29.69 5.55 -466.79 -2.59 -32.28 16 11 C 0.50 20.77 7.91 87.66 0.69 21.46 16 12 O -0.59 -31.10 16.50 15.76 0.26 -30.84 16 13 C 0.06 1.77 5.94 71.24 0.42 2.20 16 14 O -0.35 -11.18 9.68 -44.98 -0.44 -11.61 16 15 C 0.47 11.90 7.26 71.24 0.52 12.41 16 16 O -0.52 -13.67 15.73 21.96 0.35 -13.33 16 17 C -0.09 -1.63 2.77 -11.60 -0.03 -1.66 16 18 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 19 C -0.10 -1.16 4.46 30.62 0.14 -1.02 16 20 C -0.13 -0.66 6.08 30.67 0.19 -0.47 16 21 C 0.10 0.55 6.39 86.36 0.55 1.11 16 22 N -0.62 -10.05 2.98 -837.74 -2.49 -12.55 16 23 C 0.70 14.96 8.57 179.06 1.53 16.49 16 24 N -0.84 -8.60 8.78 -184.75 -1.62 -10.22 16 25 O -0.65 -22.35 16.60 -3.99 -0.07 -22.41 16 26 C 0.14 2.95 5.62 86.22 0.48 3.43 16 27 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 28 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 29 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 30 H 0.41 14.01 8.32 -92.71 -0.77 13.24 16 31 H 0.13 3.05 8.13 -2.39 -0.02 3.03 16 32 H 0.13 3.04 8.13 -2.39 -0.02 3.02 16 33 H 0.08 0.92 8.13 -2.39 -0.02 0.90 16 34 H 0.08 0.96 8.07 -2.39 -0.02 0.94 16 35 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 36 H 0.07 0.44 8.14 -2.39 -0.02 0.43 16 37 H 0.09 0.29 8.14 -2.38 -0.02 0.27 16 38 H 0.11 -0.06 5.64 -2.39 -0.01 -0.08 16 39 H 0.42 3.79 8.93 -92.71 -0.83 2.96 16 40 H 0.41 0.85 6.32 -92.70 -0.59 0.26 16 41 H 0.07 2.19 6.99 -2.39 -0.02 2.18 16 42 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -88.79 356.70 0.27 -88.52 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -1.10 Total: 16.99 kcal Atomic # 6 Polarization: 34.08 SS G_CDS: 5.66 Total: 39.74 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -6.42 Total: -111.54 kcal Atomic # 8 Polarization: -78.30 SS G_CDS: 0.10 Total: -78.20 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -88.79 0.27 -88.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317739416.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.950 kcal (2) G-P(sol) polarization free energy of solvation -88.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds