Wall clock time and date at job start Fri Apr 10 2020 18:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46492 * 120.00141 * 2 1 4 4 C 1.34776 * 119.99816 * 179.97438 * 2 1 3 5 5 O 1.21283 * 120.00004 * 0.02562 * 4 2 1 6 6 C 1.50704 * 120.00028 * 180.02562 * 4 2 1 7 7 N 1.46502 * 109.47096 * 179.97438 * 6 4 2 8 8 C 1.34381 * 126.76564 * 124.99792 * 7 6 4 9 9 N 1.30854 * 108.19974 * 179.97438 * 8 7 6 10 10 C 1.33627 * 109.78058 * 0.02562 * 9 8 7 11 11 N 1.39865 * 125.60303 * 180.02562 * 10 9 8 12 12 C 1.34778 * 119.99821 * 359.97438 * 11 10 9 13 13 O 1.21275 * 120.00406 * 359.97438 * 12 11 10 14 14 C 1.50708 * 119.99737 * 179.97438 * 12 11 10 15 15 S 1.80999 * 109.46974 * 179.97438 * 14 12 11 16 16 C 1.76194 * 100.00169 * 180.02562 * 15 14 12 17 17 H 1.07999 * 119.99753 * 359.97438 * 16 15 14 18 18 C 1.38796 * 120.00387 * 180.02562 * 16 15 14 19 19 N 1.31636 * 119.99745 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00459 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46851 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47193 * 119.99463 * 20 18 16 23 23 H 1.48501 * 109.46873 * 239.99553 * 20 18 16 24 24 N 1.31171 * 108.79767 * 0.02562 * 10 9 8 25 25 H 1.09007 * 109.47571 * 240.00099 * 1 2 3 26 26 H 1.09001 * 109.47121 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47261 * 120.00025 * 1 2 3 28 28 H 1.09003 * 109.47391 * 269.99691 * 3 2 1 29 29 H 1.09000 * 109.47279 * 29.99965 * 3 2 1 30 30 H 1.09004 * 109.47339 * 149.99709 * 3 2 1 31 31 H 1.08991 * 109.47135 * 59.99773 * 6 4 2 32 32 H 1.09000 * 109.46570 * 299.99835 * 6 4 2 33 33 H 1.07995 * 125.89716 * 0.26657 * 8 7 6 34 34 H 0.97007 * 120.00452 * 179.97438 * 11 10 9 35 35 H 1.08997 * 109.47305 * 299.99589 * 14 12 11 36 36 H 1.08994 * 109.47144 * 59.99931 * 14 12 11 37 37 H 0.97004 * 119.99980 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5324 -2.2175 0.0005 6 6 3.6458 -1.1673 0.0011 7 7 4.1341 -2.5485 0.0022 8 6 4.9847 -3.1017 -0.8789 9 7 5.1731 -4.3505 -0.5364 10 6 4.4596 -4.6319 0.5578 11 7 4.4176 -5.8704 1.2063 12 6 5.1384 -6.9050 0.7304 13 8 5.8231 -6.7622 -0.2604 14 6 5.0936 -8.2393 1.4295 15 16 6.1583 -9.4140 0.5561 16 6 5.9222 -10.8442 1.5577 17 1 5.2693 -10.7999 2.4170 18 6 6.5759 -12.0275 1.2432 19 7 7.3720 -12.0813 0.1962 20 14 6.3261 -13.5436 2.3055 21 1 5.3908 -13.2230 3.4135 22 1 5.7583 -14.6389 1.4792 23 1 7.6311 -13.9738 2.8687 24 7 3.8049 -3.5557 0.9238 25 1 -0.3634 -0.5138 0.8900 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 2.3792 1.5833 -1.0277 29 1 1.6084 2.0283 0.5138 30 1 3.1499 1.1383 0.5139 31 1 4.0088 -0.6533 0.8910 32 1 4.0094 -0.6537 -0.8889 33 1 5.4383 -2.6007 -1.7212 34 1 3.8696 -5.9848 1.9985 35 1 5.4439 -8.1241 2.4552 36 1 4.0695 -8.6124 1.4350 37 1 7.8286 -12.9084 -0.0238 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319085120.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:15 Heat of formation + Delta-G solvation = 54.972313 kcal Electronic energy + Delta-G solvation = -22415.057106 eV Core-core repulsion = 18743.507386 eV Total energy + Delta-G solvation = -3671.549720 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.100 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.13907 -40.20066 -39.03170 -36.09097 -34.94970 -33.45606 -32.39539 -31.04184 -29.79215 -28.87700 -27.73541 -25.89058 -25.44903 -22.63624 -22.16270 -19.98043 -19.90708 -18.00071 -17.80967 -17.51360 -16.86438 -16.48571 -16.20195 -15.80563 -15.52244 -14.77362 -14.76450 -14.46647 -14.15531 -13.99697 -13.81131 -13.34985 -13.29624 -13.21771 -12.81780 -12.57599 -12.54326 -12.16713 -11.83116 -11.04531 -10.98615 -10.92466 -10.74107 -10.31735 -9.99911 -9.79018 -9.77419 -9.28241 -9.27175 -9.04147 -8.53069 -8.20832 -6.46901 -6.18498 -3.89012 1.50176 1.86606 2.07705 2.43314 2.75852 2.91938 3.24896 3.28516 3.34252 3.52698 3.58004 3.78882 4.12419 4.22710 4.33922 4.36608 4.50778 4.68620 4.72120 4.89764 4.99259 5.07804 5.16794 5.20012 5.32632 5.52230 5.71240 5.82326 5.89303 6.15079 6.26102 6.50988 6.72615 6.87161 7.30628 7.63118 7.63693 8.27588 8.38926 8.58255 9.26909 10.88953 Molecular weight = 313.10amu Principal moments of inertia in cm(-1) A = 0.043047 B = 0.002164 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.301791 B =12936.635036 C =13356.389232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.625 5.625 3 C 0.073 3.927 4 C 0.496 3.504 5 O -0.499 6.499 6 C 0.121 3.879 7 N -0.378 5.378 8 C 0.269 3.731 9 N -0.510 5.510 10 C 0.457 3.543 11 N -0.635 5.635 12 C 0.529 3.471 13 O -0.455 6.455 14 C -0.149 4.149 15 S -0.054 6.054 16 C -0.535 4.535 17 H 0.075 0.925 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.920 3.080 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.280 1.280 24 N -0.322 5.322 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.130 0.870 33 H 0.222 0.778 34 H 0.421 0.579 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.712 31.461 0.540 33.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.362 5.362 3 C -0.071 4.071 4 C 0.281 3.719 5 O -0.372 6.372 6 C -0.006 4.006 7 N -0.171 5.171 8 C -0.029 4.029 9 N -0.239 5.239 10 C 0.087 3.913 11 N -0.291 5.291 12 C 0.313 3.687 13 O -0.320 6.320 14 C -0.299 4.299 15 S 0.173 5.827 16 C -0.683 4.683 17 H 0.093 0.907 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.746 3.254 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 N -0.158 5.158 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.134 0.866 32 H 0.147 0.853 33 H 0.238 0.762 34 H 0.258 0.742 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.013 30.745 -0.796 32.344 hybrid contribution -1.274 -0.676 2.022 2.484 sum -11.287 30.070 1.227 32.141 Atomic orbital electron populations 1.21638 0.78452 1.02349 1.02713 1.47750 1.07418 1.06036 1.74961 1.21941 0.97442 0.85355 1.02315 1.20610 0.89811 0.83835 0.77603 1.90843 1.69321 1.30577 1.46422 1.21513 0.92761 0.80066 1.06267 1.49700 1.36026 1.09373 1.22042 1.26198 0.91681 0.89409 0.95591 1.70662 1.26495 1.12631 1.14134 1.20469 0.92525 0.87590 0.90721 1.42952 1.49317 1.05690 1.31095 1.20611 0.78730 0.84375 0.84966 1.90815 1.36276 1.81820 1.23114 1.23521 1.06988 0.95252 1.04167 1.85456 1.56627 1.02921 1.37743 1.22914 1.33326 0.96751 1.15346 0.90731 1.24999 0.94503 0.98568 0.95568 1.70033 1.27430 1.27522 1.25265 0.86099 0.78131 0.81370 0.79789 1.19590 1.20587 1.20594 1.78274 1.25851 0.96434 1.15195 0.91918 0.90476 0.91971 0.92002 0.90459 0.90818 0.86610 0.85251 0.76179 0.74224 0.88658 0.88651 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 10.16 59.85 0.61 1.10 16 2 N -0.62 -3.57 3.27 -189.52 -0.62 -4.19 16 3 C 0.07 0.09 10.21 59.84 0.61 0.70 16 4 C 0.50 4.56 7.71 -10.98 -0.08 4.48 16 5 O -0.50 -7.45 15.74 5.55 0.09 -7.37 16 6 C 0.12 0.75 5.58 -5.19 -0.03 0.72 16 7 N -0.38 -4.43 3.41 -63.82 -0.22 -4.64 16 8 C 0.27 3.22 12.62 -90.68 -1.14 2.08 16 9 N -0.51 -9.11 9.37 -14.93 -0.14 -9.25 16 10 C 0.46 8.13 8.81 -320.86 -2.83 5.31 16 11 N -0.63 -10.90 5.44 -12.82 -0.07 -10.97 16 12 C 0.53 10.91 7.81 -10.98 -0.09 10.83 16 13 O -0.45 -11.17 14.54 5.56 0.08 -11.09 16 14 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 15 S -0.05 -1.49 20.57 -107.50 -2.21 -3.70 16 16 C -0.54 -15.43 9.50 30.94 0.29 -15.13 16 17 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.46 13.22 55.49 0.73 -25.72 16 20 Si 0.92 21.71 29.55 -169.99 -5.02 16.69 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 N -0.32 -5.13 11.83 30.03 0.36 -4.77 16 25 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 26 H 0.08 0.18 7.79 -51.93 -0.40 -0.23 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 29 H 0.08 0.01 7.92 -51.93 -0.41 -0.40 16 30 H 0.07 -0.02 6.44 -51.93 -0.33 -0.35 16 31 H 0.12 0.44 7.40 -51.93 -0.38 0.06 16 32 H 0.13 0.20 8.05 -51.93 -0.42 -0.22 16 33 H 0.22 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.42 5.72 8.82 -40.82 -0.36 5.36 16 35 H 0.10 1.80 8.14 -51.92 -0.42 1.37 16 36 H 0.10 1.82 8.14 -51.92 -0.42 1.40 16 37 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 343.63 15.07 5.18 5.18 Total: -1.00 -43.56 343.63 -8.77 -52.33 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -4.39 Total: -1.69 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: -2.53 Total: 9.20 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.04 Total: -59.54 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.17 Total: -18.46 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -43.56 -8.77 -52.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319085120.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.303 kcal (2) G-P(sol) polarization free energy of solvation -43.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds