Wall clock time and date at job start Fri Apr 10 2020 18:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46492 * 120.00141 * 2 1 4 4 C 1.34776 * 119.99816 * 179.97438 * 2 1 3 5 5 O 1.21283 * 120.00004 * 0.02562 * 4 2 1 6 6 C 1.50704 * 120.00028 * 180.02562 * 4 2 1 7 7 N 1.46502 * 109.47096 * 179.97438 * 6 4 2 8 8 C 1.34381 * 126.76564 * 124.99792 * 7 6 4 9 9 N 1.30854 * 108.19974 * 179.97438 * 8 7 6 10 10 C 1.33627 * 109.78058 * 0.02562 * 9 8 7 11 11 N 1.39865 * 125.60303 * 180.02562 * 10 9 8 12 12 C 1.34778 * 119.99821 * 359.97438 * 11 10 9 13 13 O 1.21275 * 120.00406 * 359.97438 * 12 11 10 14 14 C 1.50708 * 119.99737 * 179.97438 * 12 11 10 15 15 S 1.80999 * 109.46974 * 179.97438 * 14 12 11 16 16 C 1.76194 * 100.00169 * 180.02562 * 15 14 12 17 17 H 1.07999 * 119.99753 * 359.97438 * 16 15 14 18 18 C 1.38796 * 120.00387 * 180.02562 * 16 15 14 19 19 N 1.31636 * 119.99745 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00459 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46851 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47193 * 119.99463 * 20 18 16 23 23 H 1.48501 * 109.46873 * 239.99553 * 20 18 16 24 24 N 1.31171 * 108.79767 * 0.02562 * 10 9 8 25 25 H 1.09007 * 109.47571 * 240.00099 * 1 2 3 26 26 H 1.09001 * 109.47121 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47261 * 120.00025 * 1 2 3 28 28 H 1.09003 * 109.47391 * 269.99691 * 3 2 1 29 29 H 1.09000 * 109.47279 * 29.99965 * 3 2 1 30 30 H 1.09004 * 109.47339 * 149.99709 * 3 2 1 31 31 H 1.08991 * 109.47135 * 59.99773 * 6 4 2 32 32 H 1.09000 * 109.46570 * 299.99835 * 6 4 2 33 33 H 1.07995 * 125.89716 * 0.26657 * 8 7 6 34 34 H 0.97007 * 120.00452 * 179.97438 * 11 10 9 35 35 H 1.08997 * 109.47305 * 299.99589 * 14 12 11 36 36 H 1.08994 * 109.47144 * 59.99931 * 14 12 11 37 37 H 0.97004 * 119.99980 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5324 -2.2175 0.0005 6 6 3.6458 -1.1673 0.0011 7 7 4.1341 -2.5485 0.0022 8 6 4.9847 -3.1017 -0.8789 9 7 5.1731 -4.3505 -0.5364 10 6 4.4596 -4.6319 0.5578 11 7 4.4176 -5.8704 1.2063 12 6 5.1384 -6.9050 0.7304 13 8 5.8231 -6.7622 -0.2604 14 6 5.0936 -8.2393 1.4295 15 16 6.1583 -9.4140 0.5561 16 6 5.9222 -10.8442 1.5577 17 1 5.2693 -10.7999 2.4170 18 6 6.5759 -12.0275 1.2432 19 7 7.3720 -12.0813 0.1962 20 14 6.3261 -13.5436 2.3055 21 1 5.3908 -13.2230 3.4135 22 1 5.7583 -14.6389 1.4792 23 1 7.6311 -13.9738 2.8687 24 7 3.8049 -3.5557 0.9238 25 1 -0.3634 -0.5138 0.8900 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 2.3792 1.5833 -1.0277 29 1 1.6084 2.0283 0.5138 30 1 3.1499 1.1383 0.5139 31 1 4.0088 -0.6533 0.8910 32 1 4.0094 -0.6537 -0.8889 33 1 5.4383 -2.6007 -1.7212 34 1 3.8696 -5.9848 1.9985 35 1 5.4439 -8.1241 2.4552 36 1 4.0695 -8.6124 1.4350 37 1 7.8286 -12.9084 -0.0238 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319085120.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:14 Heat of formation + Delta-G solvation = 23.191849 kcal Electronic energy + Delta-G solvation = -22416.435210 eV Core-core repulsion = 18743.507386 eV Total energy + Delta-G solvation = -3672.927825 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.100 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.19198 -40.93249 -40.50304 -36.66239 -36.22936 -34.57991 -34.50550 -32.20593 -31.04892 -29.77438 -28.19963 -27.66558 -26.41091 -23.82781 -23.24550 -21.33273 -20.53941 -19.85397 -18.87581 -18.24073 -17.95134 -17.59069 -17.11678 -16.89906 -16.87360 -16.38493 -16.04136 -15.86624 -15.48531 -14.88538 -14.67674 -14.52573 -14.44112 -13.80796 -13.63426 -13.52196 -13.39262 -13.15600 -12.91107 -12.86801 -12.74673 -12.61209 -12.14400 -11.73286 -11.36813 -11.19496 -11.14835 -10.80568 -10.71760 -10.28632 -9.75736 -9.71871 -8.66798 -8.33997 -6.12285 0.48177 0.87711 1.30261 1.37058 1.42771 1.46077 1.47826 1.58607 1.88399 2.14791 2.20462 2.26860 3.00279 3.17167 3.30516 3.46029 3.69955 3.90515 4.07354 4.21088 4.25770 4.32682 4.41016 4.44112 4.47605 4.50208 4.79827 4.88302 5.00146 5.18897 5.41705 5.43842 5.48762 5.79195 6.06764 6.21444 6.25906 6.96806 7.04858 7.07331 7.25101 8.75558 Molecular weight = 313.10amu Principal moments of inertia in cm(-1) A = 0.043047 B = 0.002164 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.301791 B =12936.635036 C =13356.389232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.617 5.617 3 C 0.062 3.938 4 C 0.487 3.513 5 O -0.573 6.573 6 C 0.114 3.886 7 N -0.369 5.369 8 C 0.282 3.718 9 N -0.572 5.572 10 C 0.428 3.572 11 N -0.621 5.621 12 C 0.536 3.464 13 O -0.501 6.501 14 C -0.123 4.123 15 S -0.141 6.141 16 C -0.546 4.546 17 H 0.085 0.915 18 C 0.012 3.988 19 N -0.911 5.911 20 Si 1.001 2.999 21 H -0.257 1.257 22 H -0.274 1.274 23 H -0.273 1.273 24 N -0.337 5.337 25 H 0.042 0.958 26 H 0.113 0.887 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.148 0.852 32 H 0.187 0.813 33 H 0.278 0.722 34 H 0.435 0.565 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.217 34.180 1.501 36.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.352 5.352 3 C -0.079 4.079 4 C 0.274 3.726 5 O -0.451 6.451 6 C -0.010 4.010 7 N -0.162 5.162 8 C -0.014 4.014 9 N -0.303 5.303 10 C 0.058 3.942 11 N -0.277 5.277 12 C 0.320 3.680 13 O -0.370 6.370 14 C -0.274 4.274 15 S 0.086 5.914 16 C -0.694 4.694 17 H 0.103 0.897 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.823 3.177 21 H -0.180 1.180 22 H -0.200 1.200 23 H -0.199 1.199 24 N -0.173 5.173 25 H 0.061 0.939 26 H 0.131 0.869 27 H 0.064 0.936 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.165 0.835 32 H 0.204 0.796 33 H 0.293 0.707 34 H 0.275 0.725 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.558 33.604 0.197 35.224 hybrid contribution -1.231 -1.158 1.693 2.392 sum -11.789 32.446 1.890 34.572 Atomic orbital electron populations 1.21698 0.78755 1.04099 1.01008 1.47913 1.07652 1.06814 1.72773 1.22319 0.98112 0.83295 1.04177 1.21191 0.91073 0.83719 0.76656 1.90821 1.70837 1.33210 1.50268 1.22171 0.90755 0.77555 1.10511 1.49960 1.35232 1.10352 1.20664 1.27124 0.90427 0.87999 0.95807 1.70565 1.28546 1.15982 1.15228 1.20597 0.93989 0.87870 0.91721 1.42516 1.48553 1.05383 1.31261 1.20407 0.78498 0.84795 0.84269 1.90793 1.38516 1.82614 1.25095 1.23318 1.06303 0.93680 1.04101 1.85629 1.59506 1.05757 1.40515 1.23250 1.33580 0.97022 1.15517 0.89661 1.26147 0.93885 1.02258 0.96949 1.70194 1.28605 1.28655 1.27301 0.84875 0.78475 0.76450 0.77945 1.18026 1.19984 1.19866 1.78147 1.25463 0.96825 1.16819 0.93869 0.86871 0.93604 0.90031 0.89004 0.88733 0.83505 0.79588 0.70700 0.72538 0.86193 0.86548 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 10.16 127.77 1.30 2.15 16 2 N -0.62 -5.55 3.27 -871.89 -2.85 -8.41 16 3 C 0.06 -0.13 10.21 127.77 1.30 1.18 16 4 C 0.49 8.11 7.71 87.66 0.68 8.78 16 5 O -0.57 -17.39 15.74 -3.04 -0.05 -17.44 16 6 C 0.11 0.98 5.58 85.63 0.48 1.46 16 7 N -0.37 -7.86 3.41 -355.83 -1.21 -9.07 16 8 C 0.28 6.18 12.62 180.37 2.28 8.45 16 9 N -0.57 -20.45 9.37 -201.13 -1.89 -22.34 16 10 C 0.43 15.39 8.81 260.81 2.30 17.69 16 11 N -0.62 -21.60 5.44 -312.87 -1.70 -23.30 16 12 C 0.54 22.58 7.81 87.66 0.68 23.27 16 13 O -0.50 -25.57 14.54 -3.02 -0.04 -25.62 16 14 C -0.12 -5.15 6.16 71.24 0.44 -4.71 16 15 S -0.14 -8.05 20.57 -56.49 -1.16 -9.21 16 16 C -0.55 -31.72 9.50 67.95 0.65 -31.07 16 17 H 0.09 4.59 7.80 -2.91 -0.02 4.57 16 18 C 0.01 0.71 5.49 84.86 0.47 1.18 16 19 N -0.91 -56.81 13.22 21.65 0.29 -56.53 16 20 Si 1.00 44.46 29.55 68.60 2.03 46.49 16 21 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 N -0.34 -10.58 11.83 -58.89 -0.70 -11.28 16 25 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 26 H 0.11 0.23 7.79 -2.39 -0.02 0.21 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 29 H 0.09 -0.38 7.92 -2.39 -0.02 -0.40 16 30 H 0.09 -0.55 6.44 -2.39 -0.02 -0.57 16 31 H 0.15 0.43 7.40 -2.39 -0.02 0.41 16 32 H 0.19 -0.55 8.05 -2.39 -0.02 -0.57 16 33 H 0.28 2.20 8.06 -2.91 -0.02 2.18 16 34 H 0.43 11.83 8.82 -92.70 -0.82 11.01 16 35 H 0.12 4.43 8.14 -2.40 -0.02 4.41 16 36 H 0.12 4.38 8.14 -2.40 -0.02 4.36 16 37 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -102.82 343.63 3.57 -99.24 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.30 Total: 9.08 kcal Atomic # 6 Polarization: 17.82 SS G_CDS: 10.56 Total: 28.38 kcal Atomic # 7 Polarization: -122.86 SS G_CDS: -8.06 Total: -130.92 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -0.09 Total: -43.06 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.16 Total: -9.21 kcal Total: -102.82 3.57 -99.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319085120.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.436 kcal (2) G-P(sol) polarization free energy of solvation -102.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds