Wall clock time and date at job start Fri Apr 10 2020 18:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48493 * 109.46720 * 29.99666 * 3 2 1 6 6 H 1.48492 * 109.47096 * 149.99846 * 3 2 1 7 7 C 1.37885 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99960 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00051 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47271 * 179.97438 * 10 9 7 12 12 C 1.34774 * 119.99969 * 179.97438 * 11 10 9 13 13 O 1.21351 * 120.00197 * 0.02562 * 12 11 10 14 14 C 1.49454 * 119.99866 * 180.02562 * 12 11 10 15 15 O 1.21346 * 120.00349 * 359.97438 * 14 12 11 16 16 N 1.34784 * 119.99872 * 179.97438 * 14 12 11 17 17 C 1.46494 * 119.99635 * 179.97438 * 16 14 12 18 18 C 1.53002 * 109.47001 * 180.02562 * 17 16 14 19 19 H 1.08994 * 110.33530 * 60.79322 * 18 17 16 20 20 C 1.54476 * 110.37465 * 183.16773 * 18 17 16 21 21 C 1.54508 * 104.06783 * 142.80726 * 20 18 17 22 22 C 1.54488 * 104.06195 * 359.97438 * 21 20 18 23 23 H 1.08997 * 110.46299 * 94.89561 * 22 21 20 24 24 C 1.50689 * 110.37558 * 217.19366 * 22 21 20 25 25 N 1.34778 * 119.99883 * 291.83829 * 24 22 21 26 26 O 1.21277 * 120.00440 * 111.83083 * 24 22 21 27 27 O 1.44425 * 110.36807 * 298.54374 * 18 17 16 28 28 H 0.96991 * 120.00310 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46932 * 60.00113 * 9 7 2 30 30 H 1.09005 * 109.47238 * 300.00491 * 9 7 2 31 31 H 1.09004 * 109.47330 * 60.00023 * 10 9 7 32 32 H 1.08997 * 109.47279 * 300.00509 * 10 9 7 33 33 H 0.96999 * 119.99980 * 0.02562 * 11 10 9 34 34 H 0.96995 * 120.00015 * 359.72396 * 16 14 12 35 35 H 1.09005 * 109.47306 * 299.99972 * 17 16 14 36 36 H 1.09002 * 109.47518 * 60.00210 * 17 16 14 37 37 H 1.09002 * 110.50803 * 261.45009 * 20 18 17 38 38 H 1.09004 * 110.51469 * 24.16034 * 20 18 17 39 39 H 1.09002 * 110.51371 * 241.35855 * 21 20 18 40 40 H 1.08997 * 110.63115 * 118.69733 * 21 20 18 41 41 H 0.96997 * 120.00189 * 359.97438 * 25 24 22 42 42 H 0.96998 * 120.00202 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 0.0001 12 6 2.1867 -6.0980 -0.0003 13 8 3.4002 -6.0980 -0.0007 14 6 1.4394 -7.3923 -0.0003 15 8 0.2260 -7.3924 0.0006 16 7 2.1134 -8.5596 -0.0012 17 6 1.3808 -9.8282 -0.0006 18 6 2.3751 -10.9912 -0.0012 19 1 3.0009 -10.9549 0.8904 20 6 1.6255 -12.3395 -0.0806 21 6 2.5234 -13.2159 -0.9823 22 6 3.7091 -12.2930 -1.3417 23 1 4.5410 -12.4574 -0.6569 24 6 4.1466 -12.5307 -2.7639 25 7 4.7276 -13.6983 -3.1041 26 8 3.9758 -11.6714 -3.6026 27 8 3.1926 -10.9529 -1.1912 28 1 -0.4850 0.8399 -0.0004 29 1 0.6241 -2.5568 -0.8903 30 1 0.6247 -2.5572 0.8897 31 1 2.8720 -3.6044 0.8895 32 1 2.8720 -3.6043 -0.8904 33 1 0.5428 -4.9308 0.0000 34 1 3.0833 -8.5595 -0.0060 35 1 0.7551 -9.8861 0.8901 36 1 0.7532 -9.8859 -0.8899 37 1 1.5311 -12.7829 0.9107 38 1 0.6438 -12.2047 -0.5348 39 1 1.9857 -13.5142 -1.8824 40 1 2.8732 -14.0936 -0.4390 41 1 4.8644 -14.3854 -2.4334 42 1 5.0095 -13.8511 -4.0195 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323640241.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:21 Heat of formation + Delta-G solvation = -197.532434 kcal Electronic energy + Delta-G solvation = -25099.675507 eV Core-core repulsion = 21077.963832 eV Total energy + Delta-G solvation = -4021.711675 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.77605 -41.25899 -39.80261 -39.30065 -36.95817 -35.96229 -34.86338 -34.78834 -33.11482 -31.72956 -31.51620 -28.10694 -26.99112 -25.04039 -23.50624 -22.75734 -22.40985 -21.61726 -21.29900 -19.68031 -18.65485 -18.58737 -18.06207 -17.82459 -17.52791 -17.10766 -16.66901 -16.58252 -16.46996 -16.22126 -15.74577 -15.58927 -15.25611 -14.86073 -14.67464 -14.64156 -14.31311 -13.83324 -13.73389 -13.26878 -12.95086 -12.90008 -12.79336 -12.63928 -12.53132 -12.38614 -12.29138 -11.72761 -11.69339 -11.44513 -11.14745 -10.75992 -10.72135 -10.69727 -10.62068 -10.38357 -10.21104 -8.23706 -6.35037 0.30235 1.29640 1.43081 1.43697 1.52466 1.55294 2.09806 2.14273 2.39699 2.65544 3.01327 3.10936 3.41307 3.45690 3.69206 3.89016 3.99742 4.07337 4.11102 4.37879 4.40613 4.43808 4.48448 4.56931 4.79549 4.80112 4.91963 5.03935 5.04533 5.06881 5.17043 5.41396 5.53925 5.67757 5.74783 5.87874 5.90281 6.12373 6.33072 6.43891 6.68153 6.78778 6.91029 7.31146 7.34266 8.88360 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.028058 B = 0.002005 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.682695 B =13961.143343 C =14583.286537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.003 3.997 3 Si 0.970 3.030 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.019 3.981 10 C 0.137 3.863 11 N -0.688 5.688 12 C 0.499 3.501 13 O -0.550 6.550 14 C 0.514 3.486 15 O -0.542 6.542 16 N -0.685 5.685 17 C 0.120 3.880 18 C 0.059 3.941 19 H 0.107 0.893 20 C -0.141 4.141 21 C -0.134 4.134 22 C 0.050 3.950 23 H 0.130 0.870 24 C 0.513 3.487 25 N -0.827 5.827 26 O -0.589 6.589 27 O -0.380 6.380 28 H 0.266 0.734 29 H 0.007 0.993 30 H 0.010 0.990 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.415 0.585 34 H 0.419 0.581 35 H 0.107 0.893 36 H 0.066 0.934 37 H 0.119 0.881 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.130 0.870 41 H 0.422 0.578 42 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.012 -36.614 2.157 37.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.794 3.206 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.083 0.917 9 C -0.019 4.019 10 C 0.015 3.985 11 N -0.339 5.339 12 C 0.280 3.720 13 O -0.428 6.428 14 C 0.294 3.706 15 O -0.420 6.420 16 N -0.337 5.337 17 C -0.003 4.003 18 C 0.001 3.999 19 H 0.125 0.875 20 C -0.179 4.179 21 C -0.172 4.172 22 C -0.011 4.011 23 H 0.147 0.853 24 C 0.298 3.702 25 N -0.394 5.394 26 O -0.469 6.469 27 O -0.299 6.299 28 H 0.074 0.926 29 H 0.025 0.975 30 H 0.028 0.972 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.251 0.749 34 H 0.256 0.744 35 H 0.125 0.875 36 H 0.085 0.915 37 H 0.137 0.863 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.148 0.852 41 H 0.254 0.746 42 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 6.710 -35.683 1.640 36.345 hybrid contribution 0.264 0.788 -0.366 0.908 sum 6.974 -34.895 1.274 35.608 Atomic orbital electron populations 1.70076 1.07687 1.28047 1.50907 1.25945 0.95823 1.03346 0.94410 0.85376 0.78619 0.78151 0.78473 1.19860 1.20620 1.18740 1.21447 0.93748 0.91539 1.51616 0.91729 1.19181 0.94332 0.91896 0.96490 1.21490 0.95144 0.80798 1.01115 1.46061 1.11903 1.05429 1.70547 1.20363 0.87573 0.85815 0.78294 1.90718 1.14083 1.87919 1.50126 1.19939 0.87218 0.85489 0.77985 1.90746 1.13894 1.87773 1.49557 1.45667 1.11968 1.04672 1.71424 1.21840 0.94478 0.80060 1.03904 1.23532 0.92071 0.95019 0.89248 0.87491 1.22958 0.99454 0.92531 1.02910 1.22952 0.94173 0.99048 1.01008 1.23161 1.00004 0.84428 0.93497 0.85258 1.20806 0.76681 0.82197 0.90559 1.43560 1.62564 1.17038 1.16198 1.90799 1.56585 1.46045 1.53439 1.89329 1.66592 1.28168 1.45801 0.92551 0.97511 0.97215 0.91850 0.92274 0.74891 0.74358 0.87469 0.91535 0.86259 0.90299 0.91010 0.85203 0.74583 0.75842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.74 13.29 21.45 0.28 -55.45 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.97 44.25 29.54 68.60 2.03 46.28 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.55 -30.84 9.11 25.60 0.23 -30.61 16 8 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.02 0.97 5.09 29.85 0.15 1.12 16 10 C 0.14 6.04 5.61 86.38 0.48 6.53 16 11 N -0.69 -26.77 5.55 -464.42 -2.58 -29.35 16 12 C 0.50 18.39 7.89 87.27 0.69 19.08 16 13 O -0.55 -22.14 16.48 -3.25 -0.05 -22.19 16 14 C 0.51 16.39 7.89 87.27 0.69 17.08 16 15 O -0.54 -19.09 16.48 -3.23 -0.05 -19.14 16 16 N -0.68 -16.96 5.47 -464.40 -2.54 -19.50 16 17 C 0.12 2.15 5.31 86.38 0.46 2.60 16 18 C 0.06 0.70 3.36 31.10 0.10 0.80 16 19 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 20 C -0.14 -0.75 6.63 31.61 0.21 -0.54 16 21 C -0.13 -0.53 6.62 31.61 0.21 -0.32 16 22 C 0.05 0.53 3.71 30.35 0.11 0.64 16 23 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 24 C 0.51 8.35 7.34 87.65 0.64 8.99 16 25 N -0.83 -4.41 8.87 -173.54 -1.54 -5.95 16 26 O -0.59 -17.86 17.39 15.32 0.27 -17.59 16 27 O -0.38 -7.43 10.46 -130.64 -1.37 -8.80 16 28 H 0.27 14.99 8.31 -92.72 -0.77 14.22 16 29 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 30 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.06 2.78 8.14 -2.38 -0.02 2.76 16 32 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.41 15.47 7.94 -92.71 -0.74 14.73 16 34 H 0.42 10.08 7.88 -92.71 -0.73 9.35 16 35 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.07 1.42 8.12 -2.39 -0.02 1.40 16 37 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 38 H 0.08 0.57 7.86 -2.39 -0.02 0.55 16 39 H 0.07 0.47 7.86 -2.39 -0.02 0.45 16 40 H 0.13 -0.52 8.14 -2.39 -0.02 -0.54 16 41 H 0.42 -1.36 8.83 -92.71 -0.82 -2.17 16 42 H 0.41 2.03 8.93 -92.71 -0.83 1.20 16 Total: -1.00 -84.92 365.63 -3.13 -88.04 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -2.02 Total: 17.63 kcal Atomic # 6 Polarization: 21.58 SS G_CDS: 4.45 Total: 26.03 kcal Atomic # 7 Polarization: -103.88 SS G_CDS: -6.37 Total: -110.25 kcal Atomic # 8 Polarization: -66.52 SS G_CDS: -1.21 Total: -67.73 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -84.92 -3.13 -88.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323640241.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.489 kcal (2) G-P(sol) polarization free energy of solvation -84.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds