Wall clock time and date at job start Fri Apr 10 2020 18:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99819 * 2 1 4 4 H 1.48501 * 109.46953 * 269.99714 * 3 2 1 5 5 H 1.48499 * 109.47017 * 29.99760 * 3 2 1 6 6 H 1.48496 * 109.46863 * 150.00088 * 3 2 1 7 7 C 1.37877 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99617 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00228 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46915 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.46932 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99916 * 179.97438 * 11 10 9 13 13 O 1.21353 * 119.99982 * 0.02562 * 12 11 10 14 14 C 1.49452 * 120.00218 * 180.02562 * 12 11 10 15 15 O 1.21347 * 119.99476 * 0.02562 * 14 12 11 16 16 N 1.34771 * 120.00090 * 180.02562 * 14 12 11 17 17 C 1.46506 * 119.99908 * 180.02562 * 16 14 12 18 18 C 1.52996 * 109.47233 * 179.97438 * 17 16 14 19 19 H 1.09001 * 109.82289 * 59.42825 * 18 17 16 20 20 C 1.54429 * 109.85205 * 180.37603 * 18 17 16 21 21 C 1.55306 * 102.23000 * 140.83419 * 20 18 17 22 22 C 1.54947 * 100.97824 * 325.92130 * 21 20 18 23 23 H 1.09003 * 110.30537 * 277.40785 * 22 21 20 24 24 C 1.50697 * 110.30950 * 155.34179 * 22 21 20 25 25 N 1.34777 * 120.00408 * 64.99833 * 24 22 21 26 26 O 1.21287 * 119.99454 * 244.99700 * 24 22 21 27 27 O 1.43234 * 109.83024 * 298.54752 * 18 17 16 28 28 H 0.96993 * 119.99924 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46682 * 59.99875 * 9 7 2 30 30 H 1.08997 * 109.46766 * 300.00028 * 9 7 2 31 31 H 1.09005 * 109.47027 * 60.00292 * 10 9 7 32 32 H 1.08997 * 109.47640 * 300.00357 * 10 9 7 33 33 H 0.96992 * 119.99997 * 0.02562 * 11 10 9 34 34 H 0.96992 * 120.00215 * 359.97438 * 16 14 12 35 35 H 1.09001 * 109.47309 * 59.99157 * 17 16 14 36 36 H 1.09007 * 109.46624 * 299.99775 * 17 16 14 37 37 H 1.09001 * 110.83577 * 22.66101 * 20 18 17 38 38 H 1.09006 * 110.89055 * 259.02844 * 20 18 17 39 39 H 1.09002 * 111.12770 * 207.97856 * 21 20 18 40 40 H 1.08995 * 111.12571 * 83.85771 * 21 20 18 41 41 H 0.97002 * 119.99723 * 359.97438 * 25 24 22 42 42 H 0.97001 * 120.00101 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5128 -4.9308 0.0012 12 6 2.1867 -6.0980 0.0007 13 8 3.4002 -6.0980 0.0003 14 6 1.4395 -7.3923 0.0008 15 8 0.2260 -7.3923 0.0007 16 7 2.1134 -8.5595 0.0009 17 6 1.3809 -9.8283 0.0004 18 6 2.3752 -10.9912 0.0000 19 1 3.0117 -10.9335 0.8829 20 6 1.6120 -12.3336 -0.0101 21 6 2.4772 -13.1968 -0.9684 22 6 2.9662 -12.1228 -1.9725 23 1 2.2053 -11.9400 -2.7312 24 6 4.2548 -12.5602 -2.6199 25 7 4.2731 -13.6454 -3.4189 26 8 5.2754 -11.9355 -2.4220 27 8 3.1804 -10.9416 -1.1835 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8903 31 1 2.8719 -3.6043 0.8906 32 1 2.8720 -3.6044 -0.8894 33 1 0.5429 -4.9308 0.0011 34 1 3.0834 -8.5595 0.0006 35 1 0.7545 -9.8858 -0.8898 36 1 0.7539 -9.8861 0.8902 37 1 0.6051 -12.2042 -0.4071 38 1 1.5833 -12.7720 0.9875 39 1 1.8736 -13.9551 -1.4671 40 1 3.3153 -13.6506 -0.4395 41 1 3.4569 -14.1452 -3.5769 42 1 5.1026 -13.9272 -3.8354 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323640249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:15:34 Heat of formation + Delta-G solvation = -165.041420 kcal Electronic energy + Delta-G solvation = -25118.328509 eV Core-core repulsion = 21098.025750 eV Total energy + Delta-G solvation = -4020.302759 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.91531 -40.23820 -38.92250 -38.11124 -35.43610 -34.63017 -34.27536 -32.82058 -32.69804 -30.89098 -29.75995 -27.19111 -25.36528 -23.76839 -22.61487 -22.05998 -20.96955 -20.78454 -20.04234 -18.32203 -18.27701 -17.91781 -16.78561 -16.43623 -16.33761 -16.20354 -15.62284 -15.50737 -15.09219 -14.82194 -14.58715 -14.47749 -14.17561 -13.92051 -13.60765 -13.24907 -13.03491 -12.59625 -12.53198 -12.29556 -12.27886 -11.99991 -11.59682 -11.41582 -11.19199 -11.03032 -10.63628 -10.57118 -10.35447 -10.19525 -9.93887 -9.75273 -9.39976 -9.31058 -9.14282 -8.63267 -8.38022 -6.07157 -4.10516 1.68835 2.12121 2.50292 2.67396 3.31595 3.37537 3.40420 3.42440 3.50995 3.73764 3.95278 4.11009 4.16567 4.39960 4.43239 4.48296 4.66230 4.74308 4.85687 4.97288 5.01288 5.12903 5.25646 5.29660 5.34307 5.58289 6.10434 6.22528 6.24053 6.29542 6.39977 6.66211 6.75447 6.80452 7.13011 7.51337 7.61975 7.73467 7.78119 7.90720 7.99550 8.26043 8.41114 8.95150 9.54155 11.04344 Molecular weight = 313.15amu Principal moments of inertia in cm(-1) A = 0.027999 B = 0.002009 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.805071 B =13933.813116 C =14595.926504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.119 3.881 11 N -0.687 5.687 12 C 0.497 3.503 13 O -0.530 6.530 14 C 0.509 3.491 15 O -0.525 6.525 16 N -0.699 5.699 17 C 0.110 3.890 18 C 0.064 3.936 19 H 0.096 0.904 20 C -0.144 4.144 21 C -0.144 4.144 22 C 0.061 3.939 23 H 0.100 0.900 24 C 0.515 3.485 25 N -0.854 5.854 26 O -0.517 6.517 27 O -0.341 6.341 28 H 0.262 0.738 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.410 0.590 34 H 0.418 0.582 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.401 0.599 42 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.244 -33.812 -3.019 33.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.027 4.027 10 C -0.003 4.003 11 N -0.338 5.338 12 C 0.276 3.724 13 O -0.408 6.408 14 C 0.290 3.710 15 O -0.400 6.400 16 N -0.354 5.354 17 C -0.014 4.014 18 C 0.006 3.994 19 H 0.114 0.886 20 C -0.182 4.182 21 C -0.182 4.182 22 C 0.000 4.000 23 H 0.118 0.882 24 C 0.298 3.702 25 N -0.420 5.420 26 O -0.390 6.390 27 O -0.259 6.259 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.246 0.754 34 H 0.255 0.745 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.229 0.771 42 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 1.792 -32.926 -2.802 33.094 hybrid contribution 0.117 0.365 -0.302 0.488 sum 1.909 -32.561 -3.104 32.764 Atomic orbital electron populations 1.69961 1.06082 1.26905 1.50172 1.25009 0.94912 0.99445 0.94982 0.86490 0.79799 0.82942 0.78185 1.20562 1.21180 1.19725 1.21024 0.93245 0.90253 1.51572 0.92151 1.19357 0.94200 0.90881 0.98226 1.21928 0.96259 0.80769 1.01351 1.46212 1.11716 1.05763 1.70127 1.19962 0.87739 0.85236 0.79460 1.90748 1.13209 1.87491 1.49334 1.20455 0.87668 0.85608 0.77311 1.90743 1.13444 1.87735 1.48121 1.45622 1.11818 1.04480 1.73431 1.21862 0.94240 0.81869 1.03421 1.23152 0.92417 0.94370 0.89447 0.88624 1.23119 0.99871 0.93633 1.01625 1.23262 1.00597 0.97670 0.96708 1.22847 0.94694 0.87059 0.95429 0.88207 1.20472 0.90541 0.80338 0.78827 1.43760 1.15353 1.30978 1.51922 1.90820 1.34623 1.53478 1.60083 1.88638 1.65223 1.38453 1.33600 0.92811 0.95676 0.95649 0.91880 0.91872 0.75448 0.74516 0.90533 0.89673 0.89256 0.88783 0.88709 0.89539 0.77090 0.76332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 10 C 0.12 2.57 5.61 -4.04 -0.02 2.54 16 11 N -0.69 -13.07 5.55 -60.73 -0.34 -13.40 16 12 C 0.50 9.07 7.89 -11.58 -0.09 8.98 16 13 O -0.53 -10.76 16.48 5.49 0.09 -10.67 16 14 C 0.51 8.01 7.89 -11.59 -0.09 7.92 16 15 O -0.52 -9.03 16.48 5.50 0.09 -8.94 16 16 N -0.70 -8.77 5.46 -60.73 -0.33 -9.11 16 17 C 0.11 0.99 5.23 -4.04 -0.02 0.97 16 18 C 0.06 0.45 3.60 -25.98 -0.09 0.36 16 19 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 20 C -0.14 -0.51 6.55 -24.76 -0.16 -0.67 16 21 C -0.14 -0.45 6.54 -24.48 -0.16 -0.61 16 22 C 0.06 0.40 3.86 -26.86 -0.10 0.29 16 23 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 24 C 0.52 4.29 7.46 -10.99 -0.08 4.21 16 25 N -0.85 -3.00 8.86 31.22 0.28 -2.73 16 26 O -0.52 -7.29 17.38 -13.80 -0.24 -7.53 16 27 O -0.34 -3.43 10.09 -54.58 -0.55 -3.98 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.41 7.38 7.94 -40.82 -0.32 7.06 16 34 H 0.42 5.31 7.87 -40.82 -0.32 4.99 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.69 8.14 -51.92 -0.42 0.26 16 37 H 0.09 0.24 7.85 -51.93 -0.41 -0.17 16 38 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 40 H 0.09 0.32 8.05 -51.93 -0.42 -0.10 16 41 H 0.40 0.00 8.83 -40.82 -0.36 -0.36 16 42 H 0.41 1.22 8.93 -40.82 -0.36 0.86 16 LS Contribution 365.68 15.07 5.51 5.51 Total: -1.00 -37.63 365.68 -7.12 -44.75 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -5.96 Total: 4.45 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: -1.38 Total: 10.75 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 0.34 Total: -50.91 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.61 Total: -31.12 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.63 -7.12 -44.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323640249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.292 kcal (2) G-P(sol) polarization free energy of solvation -37.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds