Wall clock time and date at job start Fri Apr 10 2020 18:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30865 * 125.88696 * 2 1 4 4 C 1.33692 * 109.76933 * 180.02562 * 3 2 1 5 5 S 1.76199 * 125.61762 * 179.97438 * 4 3 2 6 6 C 1.81398 * 103.00071 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.47199 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46891 * 179.97438 * 7 6 5 9 9 O 1.21275 * 120.00175 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99721 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00118 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.47259 * 180.02562 * 11 10 8 13 13 O 1.21289 * 119.99989 * 359.97438 * 12 11 10 14 14 N 1.34772 * 120.00016 * 180.02562 * 12 11 10 15 15 C 1.37098 * 120.00392 * 179.97438 * 14 12 11 16 16 H 1.08003 * 119.99668 * 0.02562 * 15 14 12 17 17 C 1.38943 * 120.00525 * 179.97438 * 15 14 12 18 18 N 1.31413 * 119.99686 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00390 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46651 * 60.00094 * 19 17 15 21 21 H 1.48499 * 109.47282 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.46801 * 300.00144 * 19 17 15 23 23 N 1.31248 * 108.76478 * 0.22592 * 4 3 2 24 24 N 1.34349 * 125.88497 * 180.02562 * 2 1 3 25 25 H 0.96999 * 126.75922 * 0.02562 * 24 2 1 26 26 H 1.09002 * 109.47179 * 89.97411 * 1 2 3 27 27 H 1.08998 * 109.47400 * 209.97771 * 1 2 3 28 28 H 1.09000 * 109.47240 * 329.98370 * 1 2 3 29 29 H 1.08998 * 109.47085 * 299.99567 * 6 5 4 30 30 H 1.09000 * 109.46946 * 60.00083 * 6 5 4 31 31 H 1.08990 * 109.47017 * 300.00128 * 7 6 5 32 32 H 1.09000 * 109.46988 * 60.00250 * 7 6 5 33 33 H 0.97000 * 119.99793 * 0.02562 * 10 8 7 34 34 H 1.09002 * 109.46872 * 300.00398 * 11 10 8 35 35 H 1.09004 * 109.46664 * 59.99920 * 11 10 8 36 36 H 0.97004 * 120.00169 * 359.97438 * 14 12 11 37 37 H 0.97002 * 119.99918 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0602 0.0000 4 6 3.5585 0.6891 -0.0006 5 16 4.9419 1.7803 -0.0014 6 6 6.3569 0.6453 -0.0027 7 6 7.6574 1.4514 -0.0042 8 6 8.8329 0.5084 -0.0046 9 8 8.6487 -0.6903 -0.0043 10 7 10.0889 0.9972 -0.0064 11 6 11.2317 0.0805 -0.0074 12 6 12.5125 0.8745 -0.0088 13 8 12.4746 2.0868 -0.0094 14 7 13.7002 0.2375 -0.0104 15 6 14.8655 0.9597 -0.0121 16 1 14.8317 2.0392 -0.0118 17 6 16.0900 0.3030 -0.0132 18 7 16.1311 -1.0104 -0.0131 19 14 17.6778 1.2872 -0.0149 20 1 17.7308 2.1431 1.1975 21 1 18.8361 0.3580 -0.0153 22 1 17.7284 2.1428 -1.2275 23 7 3.6191 -0.6220 -0.0058 24 7 2.2945 -1.0885 -0.0005 25 1 2.0051 -2.0143 -0.0012 26 1 -0.3634 0.0005 -1.0277 27 1 -0.3634 -0.8902 0.5135 28 1 -0.3634 0.8898 0.5141 29 1 6.3195 0.0170 0.8872 30 1 6.3181 0.0173 -0.8928 31 1 7.6945 2.0793 -0.8942 32 1 7.6964 2.0796 0.8857 33 1 10.2362 1.9559 -0.0071 34 1 11.1946 -0.5473 0.8829 35 1 11.1924 -0.5481 -0.8971 36 1 13.7306 -0.7321 -0.0103 37 1 16.9859 -1.4689 -0.0142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346131307.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:17 Heat of formation + Delta-G solvation = -0.037531 kcal Electronic energy + Delta-G solvation = -21604.394008 eV Core-core repulsion = 17930.458882 eV Total energy + Delta-G solvation = -3673.935126 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.100 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.42259 -39.68133 -38.16476 -34.51107 -33.70352 -33.38636 -33.12684 -32.72289 -31.39406 -28.69156 -27.96701 -25.11886 -23.96440 -23.32627 -21.43848 -20.16989 -19.57241 -18.51031 -18.12933 -17.42465 -16.72941 -16.30171 -15.94114 -15.69389 -15.45703 -14.89461 -14.70345 -14.55097 -14.19237 -13.75201 -13.66207 -13.44492 -13.40547 -12.95201 -12.56505 -12.29661 -12.20587 -12.05753 -11.64102 -11.61169 -11.11241 -10.99072 -10.93215 -10.51602 -10.36777 -10.32780 -10.14507 -9.81481 -9.64127 -8.85598 -8.65594 -8.11824 -7.99919 -6.52775 -3.95044 0.80962 1.09814 1.77954 2.34155 2.46490 2.73893 3.13118 3.20946 3.23633 3.38255 3.72132 3.78889 4.10458 4.28936 4.47303 4.74222 4.81961 4.85176 4.88787 4.96432 5.15561 5.17589 5.32185 5.47464 5.47723 5.72998 5.78795 5.88093 5.93238 6.04691 6.58704 6.61951 7.44542 7.50129 7.73239 7.90087 8.36256 8.43819 9.02956 9.37377 9.85135 10.63924 Molecular weight = 313.10amu Principal moments of inertia in cm(-1) A = 0.059794 B = 0.001756 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.161636 B =15938.872767 C =16375.982290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.291 3.709 3 N -0.518 5.518 4 C 0.212 3.788 5 S 0.025 5.975 6 C -0.096 4.096 7 C -0.126 4.126 8 C 0.518 3.482 9 O -0.547 6.547 10 N -0.705 5.705 11 C 0.109 3.891 12 C 0.427 3.573 13 O -0.597 6.597 14 N -0.548 5.548 15 C -0.307 4.307 16 H 0.105 0.895 17 C 0.026 3.974 18 N -0.894 5.894 19 Si 0.934 3.066 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 N -0.312 5.312 24 N -0.478 5.478 25 H 0.442 0.558 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.413 0.587 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.396 0.604 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.291 -0.007 0.020 28.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.010 3.990 3 N -0.249 5.249 4 C -0.178 4.178 5 S 0.252 5.748 6 C -0.246 4.246 7 C -0.168 4.168 8 C 0.302 3.698 9 O -0.425 6.425 10 N -0.359 5.359 11 C -0.019 4.019 12 C 0.213 3.787 13 O -0.484 6.484 14 N -0.183 5.183 15 C -0.436 4.436 16 H 0.123 0.877 17 C -0.177 4.177 18 N -0.534 5.534 19 Si 0.761 3.239 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.198 1.198 23 N -0.145 5.145 24 N -0.198 5.198 25 H 0.287 0.713 26 H 0.113 0.887 27 H 0.104 0.896 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.251 0.749 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.230 0.770 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -27.669 0.925 0.018 27.685 hybrid contribution 0.546 -1.898 -0.006 1.975 sum -27.123 -0.973 0.012 27.140 Atomic orbital electron populations 1.20433 0.83208 1.05248 1.04811 1.24507 0.96732 0.82613 0.95108 1.70570 0.99482 1.29030 1.25851 1.26011 0.97423 0.92947 1.01458 1.85487 0.90697 1.06136 1.92439 1.23377 0.92763 1.00070 1.08392 1.21307 0.90773 0.98513 1.06188 1.20217 0.83879 0.89143 0.76565 1.90715 1.85666 1.15909 1.50241 1.45682 1.04508 1.11784 1.73931 1.20967 0.85280 0.92362 1.03297 1.19730 0.84827 0.88461 0.85719 1.90497 1.86683 1.13806 1.57422 1.41791 1.04367 1.09599 1.62522 1.19691 0.82312 0.93165 1.48442 0.87686 1.25329 0.99793 0.95826 0.96708 1.69608 1.27629 1.07053 1.49155 0.85862 0.79962 0.78910 0.79171 1.19763 1.20853 1.19757 1.78483 0.96974 1.10427 1.28653 1.47881 1.04157 1.10109 1.57638 0.71263 0.88732 0.89647 0.88096 0.88045 0.88048 0.87480 0.87487 0.74927 0.89797 0.89788 0.77031 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.22 10.51 36.01 0.38 0.16 16 2 C 0.29 2.38 8.23 -155.74 -1.28 1.09 16 3 N -0.52 -6.17 11.21 -10.96 -0.12 -6.29 16 4 C 0.21 2.70 8.28 -90.96 -0.75 1.95 16 5 S 0.02 0.27 22.16 -107.50 -2.38 -2.11 16 6 C -0.10 -1.09 4.85 37.16 0.18 -0.91 16 7 C -0.13 -1.32 5.71 -27.88 -0.16 -1.48 16 8 C 0.52 7.60 7.83 -10.99 -0.09 7.51 16 9 O -0.55 -9.83 15.98 5.56 0.09 -9.75 16 10 N -0.70 -11.13 5.53 -61.47 -0.34 -11.47 16 11 C 0.11 1.96 6.15 -5.19 -0.03 1.93 16 12 C 0.43 9.65 7.85 -10.99 -0.09 9.56 16 13 O -0.60 -15.03 15.24 5.55 0.08 -14.95 16 14 N -0.55 -13.48 5.29 -10.97 -0.06 -13.54 16 15 C -0.31 -8.28 9.68 -14.94 -0.14 -8.43 16 16 H 0.11 2.94 7.16 -52.48 -0.38 2.57 16 17 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 18 N -0.89 -23.76 13.05 55.50 0.72 -23.03 16 19 Si 0.93 20.43 29.55 -169.99 -5.02 15.41 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 N -0.31 -3.88 12.36 30.13 0.37 -3.51 16 24 N -0.48 -4.00 7.43 32.61 0.24 -3.76 16 25 H 0.44 1.96 8.96 -182.34 -1.63 0.33 16 26 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 28 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.10 1.25 8.10 -51.92 -0.42 0.83 16 30 H 0.10 1.25 8.10 -51.92 -0.42 0.83 16 31 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.41 6.29 7.44 -40.82 -0.30 5.99 16 34 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 36 H 0.40 9.37 7.90 -40.82 -0.32 9.04 16 37 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 346.67 15.07 5.22 5.22 Total: -1.00 -35.21 346.67 -8.84 -44.05 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -5.57 Total: 11.75 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: -2.08 Total: 11.97 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: 0.82 Total: -61.60 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: 0.17 Total: -24.69 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 0.27 SS G_CDS: -2.38 Total: -2.11 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.21 -8.84 -44.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346131307.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.011 kcal (2) G-P(sol) polarization free energy of solvation -35.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds