Wall clock time and date at job start Fri Apr 10 2020 18:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30865 * 125.88696 * 2 1 4 4 C 1.33692 * 109.76933 * 180.02562 * 3 2 1 5 5 S 1.76199 * 125.61762 * 179.97438 * 4 3 2 6 6 C 1.81398 * 103.00071 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.47199 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46891 * 179.97438 * 7 6 5 9 9 O 1.21275 * 120.00175 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99721 * 179.97438 * 8 7 6 11 11 C 1.46503 * 120.00118 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.47259 * 180.02562 * 11 10 8 13 13 O 1.21289 * 119.99989 * 359.97438 * 12 11 10 14 14 N 1.34772 * 120.00016 * 180.02562 * 12 11 10 15 15 C 1.37098 * 120.00392 * 179.97438 * 14 12 11 16 16 H 1.08003 * 119.99668 * 0.02562 * 15 14 12 17 17 C 1.38943 * 120.00525 * 179.97438 * 15 14 12 18 18 N 1.31413 * 119.99686 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00390 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46651 * 60.00094 * 19 17 15 21 21 H 1.48499 * 109.47282 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.46801 * 300.00144 * 19 17 15 23 23 N 1.31248 * 108.76478 * 0.22592 * 4 3 2 24 24 N 1.34349 * 125.88497 * 180.02562 * 2 1 3 25 25 H 0.96999 * 126.75922 * 0.02562 * 24 2 1 26 26 H 1.09002 * 109.47179 * 89.97411 * 1 2 3 27 27 H 1.08998 * 109.47400 * 209.97771 * 1 2 3 28 28 H 1.09000 * 109.47240 * 329.98370 * 1 2 3 29 29 H 1.08998 * 109.47085 * 299.99567 * 6 5 4 30 30 H 1.09000 * 109.46946 * 60.00083 * 6 5 4 31 31 H 1.08990 * 109.47017 * 300.00128 * 7 6 5 32 32 H 1.09000 * 109.46988 * 60.00250 * 7 6 5 33 33 H 0.97000 * 119.99793 * 0.02562 * 10 8 7 34 34 H 1.09002 * 109.46872 * 300.00398 * 11 10 8 35 35 H 1.09004 * 109.46664 * 59.99920 * 11 10 8 36 36 H 0.97004 * 120.00169 * 359.97438 * 14 12 11 37 37 H 0.97002 * 119.99918 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0602 0.0000 4 6 3.5585 0.6891 -0.0006 5 16 4.9419 1.7803 -0.0014 6 6 6.3569 0.6453 -0.0027 7 6 7.6574 1.4514 -0.0042 8 6 8.8329 0.5084 -0.0046 9 8 8.6487 -0.6903 -0.0043 10 7 10.0889 0.9972 -0.0064 11 6 11.2317 0.0805 -0.0074 12 6 12.5125 0.8745 -0.0088 13 8 12.4746 2.0868 -0.0094 14 7 13.7002 0.2375 -0.0104 15 6 14.8655 0.9597 -0.0121 16 1 14.8317 2.0392 -0.0118 17 6 16.0900 0.3030 -0.0132 18 7 16.1311 -1.0104 -0.0131 19 14 17.6778 1.2872 -0.0149 20 1 17.7308 2.1431 1.1975 21 1 18.8361 0.3580 -0.0153 22 1 17.7284 2.1428 -1.2275 23 7 3.6191 -0.6220 -0.0058 24 7 2.2945 -1.0885 -0.0005 25 1 2.0051 -2.0143 -0.0012 26 1 -0.3634 0.0005 -1.0277 27 1 -0.3634 -0.8902 0.5135 28 1 -0.3634 0.8898 0.5141 29 1 6.3195 0.0170 0.8872 30 1 6.3181 0.0173 -0.8928 31 1 7.6945 2.0793 -0.8942 32 1 7.6964 2.0796 0.8857 33 1 10.2362 1.9559 -0.0071 34 1 11.1946 -0.5473 0.8829 35 1 11.1924 -0.5481 -0.8971 36 1 13.7306 -0.7321 -0.0103 37 1 16.9859 -1.4689 -0.0142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346131307.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:16 Heat of formation + Delta-G solvation = -27.122613 kcal Electronic energy + Delta-G solvation = -21605.568505 eV Core-core repulsion = 17930.458882 eV Total energy + Delta-G solvation = -3675.109623 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.100 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.15556 -41.04002 -39.91209 -36.26118 -35.30285 -34.14339 -33.96503 -33.46036 -33.35219 -29.58885 -29.08204 -26.76501 -25.19864 -24.18699 -22.13896 -21.40429 -21.30506 -20.05901 -19.20920 -18.71302 -17.60184 -17.30317 -17.18781 -16.92128 -16.90320 -16.39817 -16.10715 -15.80173 -15.49294 -15.03592 -14.88226 -14.20239 -13.90502 -13.86155 -13.76997 -13.56126 -13.55124 -13.39998 -12.89596 -12.85983 -12.52994 -12.46463 -12.13346 -11.78939 -11.73979 -11.55575 -11.20656 -11.05986 -10.89194 -10.55339 -10.21053 -10.07956 -8.83758 -8.50578 -6.00974 -0.03257 0.37287 0.94712 1.38676 1.43509 1.54329 1.56306 1.57386 1.85321 1.91859 2.08278 2.33756 3.13753 3.16673 3.27662 3.53419 3.75419 3.85464 3.87965 4.23543 4.42640 4.42731 4.50347 4.55155 4.64371 4.68110 4.77461 4.83624 5.01509 5.10780 5.27074 5.38708 5.91980 6.08601 6.45428 6.52773 6.77447 7.03759 7.14801 7.44808 7.94687 8.65963 Molecular weight = 313.10amu Principal moments of inertia in cm(-1) A = 0.059794 B = 0.001756 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.161636 B =15938.872767 C =16375.982290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.300 3.700 3 N -0.555 5.555 4 C 0.190 3.810 5 S 0.041 5.959 6 C -0.090 4.090 7 C -0.116 4.116 8 C 0.521 3.479 9 O -0.581 6.581 10 N -0.705 5.705 11 C 0.121 3.879 12 C 0.432 3.568 13 O -0.623 6.623 14 N -0.560 5.560 15 C -0.339 4.339 16 H 0.087 0.913 17 C -0.010 4.010 18 N -0.916 5.916 19 Si 0.997 3.003 20 H -0.270 1.270 21 H -0.272 1.272 22 H -0.270 1.270 23 N -0.346 5.346 24 N -0.471 5.471 25 H 0.457 0.543 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.417 0.583 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.398 0.602 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.693 0.287 0.015 29.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.020 3.980 3 N -0.287 5.287 4 C -0.200 4.200 5 S 0.269 5.731 6 C -0.240 4.240 7 C -0.157 4.157 8 C 0.307 3.693 9 O -0.462 6.462 10 N -0.360 5.360 11 C -0.007 4.007 12 C 0.220 3.780 13 O -0.511 6.511 14 N -0.195 5.195 15 C -0.468 4.468 16 H 0.105 0.895 17 C -0.211 4.211 18 N -0.556 5.556 19 Si 0.820 3.180 20 H -0.195 1.195 21 H -0.197 1.197 22 H -0.195 1.195 23 N -0.181 5.181 24 N -0.192 5.192 25 H 0.306 0.694 26 H 0.131 0.869 27 H 0.134 0.866 28 H 0.122 0.878 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.256 0.744 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.232 0.768 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -29.111 1.194 0.013 29.135 hybrid contribution 0.806 -2.031 -0.006 2.185 sum -28.305 -0.837 0.008 28.317 Atomic orbital electron populations 1.20724 0.79330 1.06913 1.06409 1.25435 0.98448 0.81581 0.92498 1.70564 0.99505 1.30917 1.27713 1.26281 0.98277 0.93353 1.02060 1.85259 0.89999 1.05432 1.92412 1.23233 0.93578 1.00096 1.07048 1.21319 0.88121 0.97674 1.08592 1.20855 0.84158 0.89236 0.75039 1.90706 1.86052 1.17711 1.51697 1.45694 1.04339 1.11629 1.74292 1.20772 0.83680 0.92108 1.04185 1.20432 0.85674 0.88398 0.83544 1.90474 1.87377 1.15238 1.57968 1.41850 1.04585 1.09651 1.63455 1.19723 0.83860 0.92747 1.50503 0.89465 1.26127 1.02387 0.96826 0.95746 1.69677 1.28602 1.08095 1.49255 0.84922 0.76244 0.77678 0.79109 1.19484 1.19709 1.19471 1.78367 0.99414 1.10596 1.29744 1.47827 1.03006 1.11198 1.57146 0.69372 0.86929 0.86602 0.87752 0.89424 0.89430 0.84991 0.84997 0.74422 0.88870 0.88861 0.76751 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.22 10.51 71.24 0.75 0.53 16 2 C 0.30 4.47 8.23 138.24 1.14 5.61 16 3 N -0.55 -12.88 11.21 -188.59 -2.11 -14.99 16 4 C 0.19 4.83 8.28 180.47 1.49 6.32 16 5 S 0.04 0.89 22.16 -56.49 -1.25 -0.36 16 6 C -0.09 -1.99 4.85 71.98 0.35 -1.64 16 7 C -0.12 -2.23 5.71 29.85 0.17 -2.06 16 8 C 0.52 14.74 7.83 87.66 0.69 15.42 16 9 O -0.58 -20.69 15.98 -3.01 -0.05 -20.74 16 10 N -0.71 -21.52 5.53 -466.79 -2.58 -24.10 16 11 C 0.12 4.27 6.15 85.63 0.53 4.80 16 12 C 0.43 19.59 7.85 87.66 0.69 20.28 16 13 O -0.62 -31.44 15.24 -3.06 -0.05 -31.49 16 14 N -0.56 -27.88 5.29 -307.00 -1.62 -29.51 16 15 C -0.34 -18.56 9.68 84.04 0.81 -17.75 16 16 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 17 C -0.01 -0.53 5.50 84.92 0.47 -0.06 16 18 N -0.92 -48.55 13.05 21.66 0.28 -48.27 16 19 Si 1.00 41.55 29.55 68.60 2.03 43.57 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 23 N -0.35 -8.61 12.36 -58.58 -0.72 -9.34 16 24 N -0.47 -7.39 7.43 -50.73 -0.38 -7.77 16 25 H 0.46 3.44 8.96 -213.10 -1.91 1.53 16 26 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 27 H 0.12 -0.34 8.14 -2.39 -0.02 -0.35 16 28 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.09 2.18 8.10 -2.39 -0.02 2.16 16 30 H 0.09 2.18 8.10 -2.39 -0.02 2.16 16 31 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.42 12.21 7.44 -92.71 -0.69 11.52 16 34 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 35 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 36 H 0.40 19.11 7.90 -92.71 -0.73 18.38 16 37 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -76.81 346.67 -1.55 -78.36 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: -2.18 Total: 33.20 kcal Atomic # 6 Polarization: 24.37 SS G_CDS: 7.08 Total: 31.45 kcal Atomic # 7 Polarization: -126.85 SS G_CDS: -7.14 Total: -133.98 kcal Atomic # 8 Polarization: -52.14 SS G_CDS: -0.09 Total: -52.23 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -1.25 Total: -0.36 kcal Total: -76.81 -1.55 -78.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346131307.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.235 kcal (2) G-P(sol) polarization free energy of solvation -76.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds