Wall clock time and date at job start Fri Apr 10 2020 18:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34948 * 126.03718 * 2 1 4 4 C 1.35317 * 107.74585 * 179.83892 * 3 2 1 5 5 C 1.50698 * 126.04510 * 180.15863 * 4 3 2 6 6 H 1.09005 * 109.40250 * 343.09653 * 5 4 3 7 7 C 1.53247 * 109.40787 * 102.85471 * 5 4 3 8 8 S 1.81902 * 108.50722 * 182.12607 * 7 5 4 9 9 O 1.42098 * 109.46798 * 192.85535 * 8 7 5 10 10 C 1.81899 * 101.91423 * 308.69780 * 8 7 5 11 11 C 1.53245 * 108.50628 * 51.30284 * 10 8 7 12 12 N 1.46467 * 109.41115 * 223.25416 * 5 4 3 13 13 C 1.46903 * 110.99732 * 42.11372 * 12 5 4 14 14 C 1.53005 * 109.47441 * 66.34491 * 13 12 5 15 15 H 1.09000 * 109.47178 * 54.32274 * 14 13 12 16 16 O 1.42908 * 109.46792 * 294.32774 * 14 13 12 17 17 C 1.50694 * 109.47447 * 174.32217 * 14 13 12 18 18 H 1.08001 * 119.99886 * 0.02562 * 17 14 13 19 19 C 1.37879 * 120.00298 * 179.97438 * 17 14 13 20 20 N 1.31514 * 119.99411 * 0.02562 * 19 17 14 21 21 Si 1.86793 * 120.00295 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.47027 * 60.00585 * 21 19 17 23 23 H 1.48501 * 109.47368 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47385 * 300.00979 * 21 19 17 25 25 C 1.39872 * 107.92014 * 0.42391 * 4 3 2 26 26 N 1.30836 * 108.20143 * 359.73618 * 25 4 3 27 27 H 1.08995 * 109.46899 * 269.72024 * 1 2 3 28 28 H 1.08999 * 109.47455 * 149.71215 * 1 2 3 29 29 H 1.09002 * 109.46753 * 29.71517 * 1 2 3 30 30 H 1.07998 * 126.12967 * 359.97438 * 3 2 1 31 31 H 1.09001 * 109.63358 * 301.83402 * 7 5 4 32 32 H 1.09009 * 109.62913 * 62.42030 * 7 5 4 33 33 H 1.09002 * 109.62928 * 291.60219 * 10 8 7 34 34 H 1.08997 * 109.79157 * 171.11155 * 10 8 7 35 35 H 1.09001 * 109.40502 * 177.88115 * 11 10 8 36 36 H 1.08995 * 109.34307 * 58.07971 * 11 10 8 37 37 H 1.09001 * 109.47381 * 186.34054 * 13 12 5 38 38 H 1.08995 * 109.47053 * 306.34194 * 13 12 5 39 39 H 0.96696 * 113.99453 * 292.96612 * 16 14 13 40 40 H 0.97006 * 120.00028 * 179.97438 * 20 19 17 41 41 H 1.07995 * 125.90080 * 179.71888 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 0.0036 5 6 4.7680 1.5452 0.0083 6 1 4.4896 2.5558 -0.2905 7 6 5.3648 1.5794 1.4194 8 16 6.8016 2.6950 1.4118 9 8 7.5442 2.5189 2.6104 10 6 7.7627 2.0597 0.0042 11 6 6.8358 1.9594 -1.2121 12 7 5.7531 1.0125 -0.9357 13 6 5.1065 0.5744 -2.1799 14 6 4.5312 1.7892 -2.9109 15 1 5.3162 2.5313 -3.0560 16 8 3.4762 2.3579 -2.1325 17 6 3.9917 1.3601 -4.2510 18 1 4.0526 0.3244 -4.5511 19 6 3.4194 2.2895 -5.0935 20 7 3.3448 3.5505 -4.7277 21 14 2.7513 1.7577 -6.7548 22 1 1.6822 0.7460 -6.5577 23 1 2.1929 2.9368 -7.4642 24 1 3.8481 1.1676 -7.5636 25 6 3.5346 -0.7321 -0.0039 26 7 2.2891 -1.1328 -0.0061 27 1 -0.3633 -0.0050 1.0276 28 1 -0.3634 -0.8874 -0.5183 29 1 -0.3633 0.8926 -0.5094 30 1 1.9281 2.1193 -0.0004 31 1 4.6189 1.9478 2.1237 32 1 5.6811 0.5768 1.7077 33 1 8.1576 1.0729 0.2460 34 1 8.5856 2.7392 -0.2175 35 1 7.4063 1.6154 -2.0748 36 1 6.4129 2.9409 -1.4256 37 1 5.8408 0.0813 -2.8170 38 1 4.3023 -0.1230 -1.9454 39 1 2.6964 1.7916 -2.0538 40 1 2.9425 4.2045 -5.3205 41 1 4.4053 -1.3710 -0.0077 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412977613.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:25 Heat of formation + Delta-G solvation = 16.274398 kcal Electronic energy + Delta-G solvation = -25642.682789 eV Core-core repulsion = 22072.995344 eV Total energy + Delta-G solvation = -3569.687444 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.08648 -38.26883 -35.48718 -34.95652 -33.21032 -32.20957 -31.75152 -30.52437 -29.01354 -27.29520 -26.40995 -24.20617 -23.21479 -21.96742 -20.72051 -20.39022 -19.13140 -17.18504 -17.09842 -16.49503 -15.50844 -15.32932 -14.91761 -14.79540 -14.66593 -14.45772 -14.25235 -14.14821 -13.92774 -13.39179 -13.03608 -12.81153 -12.57338 -12.44674 -12.24594 -12.14861 -11.77664 -11.59994 -11.42868 -11.11934 -11.00129 -10.91737 -10.67991 -10.39023 -10.24116 -10.04091 -9.57053 -9.38445 -8.99595 -8.69522 -8.61991 -8.10260 -7.83416 -7.23598 -6.06852 -4.24333 1.82022 2.22905 2.72325 2.84918 3.17863 3.23396 3.28906 3.31915 3.98271 4.30686 4.39820 4.78711 5.17544 5.18938 5.23206 5.26355 5.31151 5.41992 5.45073 5.49373 5.58461 5.64605 5.73033 5.91736 6.07607 6.13584 6.20679 6.24315 6.34147 6.36175 6.52148 6.70812 6.91102 7.01789 7.31327 7.50172 7.56402 7.74858 7.85515 8.05028 8.15191 8.78931 9.28891 9.51216 10.95721 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.011953 B = 0.006008 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.889046 B = 4658.966892 C = 6314.039454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.382 5.382 3 C 0.065 3.935 4 C -0.202 4.202 5 C 0.189 3.811 6 H 0.089 0.911 7 C -0.416 4.416 8 S 1.216 4.784 9 O -0.872 6.872 10 C -0.425 4.425 11 C 0.079 3.921 12 N -0.551 5.551 13 C 0.029 3.971 14 C 0.202 3.798 15 H 0.058 0.942 16 O -0.564 6.564 17 C -0.570 4.570 18 H 0.053 0.947 19 C 0.081 3.919 20 N -0.860 5.860 21 Si 0.885 3.115 22 H -0.278 1.278 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.065 3.935 26 N -0.308 5.308 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.177 0.823 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.344 0.656 40 H 0.260 0.740 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.655 -0.315 8.898 9.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.165 5.165 3 C -0.081 4.081 4 C -0.215 4.215 5 C 0.079 3.921 6 H 0.107 0.893 7 C -0.555 4.555 8 S 1.417 4.583 9 O -0.867 6.867 10 C -0.564 4.564 11 C -0.050 4.050 12 N -0.275 5.275 13 C -0.098 4.098 14 C 0.143 3.857 15 H 0.075 0.925 16 O -0.368 6.368 17 C -0.608 4.608 18 H 0.071 0.929 19 C -0.125 4.125 20 N -0.496 5.496 21 Si 0.712 3.288 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.121 4.121 26 N -0.130 5.130 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.194 0.806 31 H 0.128 0.872 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.129 0.871 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.190 0.810 40 H 0.070 0.930 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -1.773 -0.262 9.773 9.936 hybrid contribution 0.017 -1.663 -1.344 2.139 sum -1.756 -1.925 8.429 8.823 Atomic orbital electron populations 1.21760 0.74799 1.04441 1.02624 1.48323 1.06259 1.03929 1.57950 1.22303 0.90735 0.93282 1.01750 1.19669 0.93609 0.93433 1.14755 1.19392 0.87220 0.97633 0.87900 0.89304 1.27685 1.13094 1.11974 1.02786 1.70393 0.90780 1.10789 0.86305 1.93049 1.69689 1.83604 1.40367 1.27550 1.08422 1.08770 1.11664 1.21570 0.91936 0.96296 0.95185 1.61484 1.11768 1.39904 1.14319 1.23091 0.98394 1.00084 0.88267 1.19926 0.87345 0.90160 0.88250 0.92469 1.86453 1.27484 1.49212 1.73694 1.21594 1.41874 0.94753 1.02599 0.92899 1.24991 0.95112 0.94819 0.97575 1.70043 1.42334 1.01172 1.36021 0.86803 0.79432 0.78079 0.84450 1.20341 1.21236 1.20182 1.23646 0.94653 0.94939 0.98879 1.77302 1.01745 1.08491 1.25441 0.91401 0.89723 0.89456 0.80624 0.87204 0.89301 0.89227 0.87091 0.90107 0.92236 0.91660 0.90615 0.81028 0.93007 0.80633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.04 11.47 59.85 0.69 1.73 16 2 N -0.38 -5.39 4.01 -68.17 -0.27 -5.67 16 3 C 0.07 0.91 8.70 -17.22 -0.15 0.76 16 4 C -0.20 -3.05 2.81 -105.05 -0.29 -3.34 16 5 C 0.19 2.74 1.55 -68.97 -0.11 2.63 16 6 H 0.09 1.34 6.23 -51.93 -0.32 1.02 16 7 C -0.42 -5.45 5.93 37.29 0.22 -5.23 16 8 S 1.22 15.17 13.81 -107.50 -1.48 13.68 16 9 O -0.87 -15.94 18.14 -35.23 -0.64 -16.58 16 10 C -0.43 -5.36 6.67 37.28 0.25 -5.11 16 11 C 0.08 1.14 4.44 -3.93 -0.02 1.12 16 12 N -0.55 -8.62 4.37 -228.43 -1.00 -9.62 16 13 C 0.03 0.54 4.63 -3.82 -0.02 0.52 16 14 C 0.20 4.46 2.60 -27.88 -0.07 4.39 16 15 H 0.06 1.38 6.52 -51.93 -0.34 1.04 16 16 O -0.56 -12.01 8.85 -35.23 -0.31 -12.32 16 17 C -0.57 -14.56 8.70 -34.44 -0.30 -14.86 16 18 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 19 C 0.08 2.12 5.40 -17.82 -0.10 2.03 16 20 N -0.86 -23.39 12.84 55.43 0.71 -22.67 16 21 Si 0.88 20.31 29.54 -169.99 -5.02 15.29 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 C 0.07 1.04 9.70 -17.36 -0.17 0.87 16 26 N -0.31 -5.07 12.58 30.62 0.39 -4.69 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.18 2.11 8.03 -52.49 -0.42 1.69 16 31 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.09 1.30 8.14 -51.92 -0.42 0.87 16 33 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.19 7.91 -51.93 -0.41 0.78 16 36 H 0.06 0.86 6.98 -51.93 -0.36 0.50 16 37 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 38 H 0.08 1.47 4.93 -51.93 -0.26 1.21 16 39 H 0.34 7.22 6.29 45.56 0.29 7.51 16 40 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 41 H 0.18 2.65 8.06 -52.49 -0.42 2.23 16 LS Contribution 334.12 15.07 5.04 5.04 Total: -1.00 -33.91 334.12 -7.83 -41.74 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.17 Total: 10.30 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -0.07 Total: -14.50 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: -0.18 Total: -42.65 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.95 Total: -28.90 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 15.17 SS G_CDS: -1.48 Total: 13.68 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.91 -7.83 -41.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412977613.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.013 kcal (2) G-P(sol) polarization free energy of solvation -33.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds