Wall clock time and date at job start Fri Apr 10 2020 18:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34948 * 126.03718 * 2 1 4 4 C 1.35317 * 107.74585 * 179.83892 * 3 2 1 5 5 C 1.50698 * 126.04510 * 180.15863 * 4 3 2 6 6 H 1.09005 * 109.40250 * 343.09653 * 5 4 3 7 7 C 1.53247 * 109.40787 * 102.85471 * 5 4 3 8 8 S 1.81902 * 108.50722 * 182.12607 * 7 5 4 9 9 O 1.42098 * 109.46798 * 192.85535 * 8 7 5 10 10 C 1.81899 * 101.91423 * 308.69780 * 8 7 5 11 11 C 1.53245 * 108.50628 * 51.30284 * 10 8 7 12 12 N 1.46467 * 109.41115 * 223.25416 * 5 4 3 13 13 C 1.46903 * 110.99732 * 42.11372 * 12 5 4 14 14 C 1.53005 * 109.47441 * 66.34491 * 13 12 5 15 15 H 1.09000 * 109.47178 * 54.32274 * 14 13 12 16 16 O 1.42908 * 109.46792 * 294.32774 * 14 13 12 17 17 C 1.50694 * 109.47447 * 174.32217 * 14 13 12 18 18 H 1.08001 * 119.99886 * 0.02562 * 17 14 13 19 19 C 1.37879 * 120.00298 * 179.97438 * 17 14 13 20 20 N 1.31514 * 119.99411 * 0.02562 * 19 17 14 21 21 Si 1.86793 * 120.00295 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.47027 * 60.00585 * 21 19 17 23 23 H 1.48501 * 109.47368 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47385 * 300.00979 * 21 19 17 25 25 C 1.39872 * 107.92014 * 0.42391 * 4 3 2 26 26 N 1.30836 * 108.20143 * 359.73618 * 25 4 3 27 27 H 1.08995 * 109.46899 * 269.72024 * 1 2 3 28 28 H 1.08999 * 109.47455 * 149.71215 * 1 2 3 29 29 H 1.09002 * 109.46753 * 29.71517 * 1 2 3 30 30 H 1.07998 * 126.12967 * 359.97438 * 3 2 1 31 31 H 1.09001 * 109.63358 * 301.83402 * 7 5 4 32 32 H 1.09009 * 109.62913 * 62.42030 * 7 5 4 33 33 H 1.09002 * 109.62928 * 291.60219 * 10 8 7 34 34 H 1.08997 * 109.79157 * 171.11155 * 10 8 7 35 35 H 1.09001 * 109.40502 * 177.88115 * 11 10 8 36 36 H 1.08995 * 109.34307 * 58.07971 * 11 10 8 37 37 H 1.09001 * 109.47381 * 186.34054 * 13 12 5 38 38 H 1.08995 * 109.47053 * 306.34194 * 13 12 5 39 39 H 0.96696 * 113.99453 * 292.96612 * 16 14 13 40 40 H 0.97006 * 120.00028 * 179.97438 * 20 19 17 41 41 H 1.07995 * 125.90080 * 179.71888 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 0.0036 5 6 4.7680 1.5452 0.0083 6 1 4.4896 2.5558 -0.2905 7 6 5.3648 1.5794 1.4194 8 16 6.8016 2.6950 1.4118 9 8 7.5442 2.5189 2.6104 10 6 7.7627 2.0597 0.0042 11 6 6.8358 1.9594 -1.2121 12 7 5.7531 1.0125 -0.9357 13 6 5.1065 0.5744 -2.1799 14 6 4.5312 1.7892 -2.9109 15 1 5.3162 2.5313 -3.0560 16 8 3.4762 2.3579 -2.1325 17 6 3.9917 1.3601 -4.2510 18 1 4.0526 0.3244 -4.5511 19 6 3.4194 2.2895 -5.0935 20 7 3.3448 3.5505 -4.7277 21 14 2.7513 1.7577 -6.7548 22 1 1.6822 0.7460 -6.5577 23 1 2.1929 2.9368 -7.4642 24 1 3.8481 1.1676 -7.5636 25 6 3.5346 -0.7321 -0.0039 26 7 2.2891 -1.1328 -0.0061 27 1 -0.3633 -0.0050 1.0276 28 1 -0.3634 -0.8874 -0.5183 29 1 -0.3633 0.8926 -0.5094 30 1 1.9281 2.1193 -0.0004 31 1 4.6189 1.9478 2.1237 32 1 5.6811 0.5768 1.7077 33 1 8.1576 1.0729 0.2460 34 1 8.5856 2.7392 -0.2175 35 1 7.4063 1.6154 -2.0748 36 1 6.4129 2.9409 -1.4256 37 1 5.8408 0.0813 -2.8170 38 1 4.3023 -0.1230 -1.9454 39 1 2.6964 1.7916 -2.0538 40 1 2.9425 4.2045 -5.3205 41 1 4.4053 -1.3710 -0.0077 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412977613.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:25 Heat of formation + Delta-G solvation = -10.875027 kcal Electronic energy + Delta-G solvation = -25643.860076 eV Core-core repulsion = 22072.995344 eV Total energy + Delta-G solvation = -3570.864732 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.24002 -39.61305 -36.87567 -36.50960 -34.29413 -34.09178 -32.94531 -31.87970 -30.12452 -28.96133 -27.38928 -25.87484 -24.34901 -23.41324 -21.98252 -21.62763 -20.35509 -18.99226 -18.27943 -17.63433 -16.76136 -16.61174 -16.54531 -16.05577 -15.99607 -15.79996 -15.64998 -15.36701 -15.14443 -14.84573 -14.52833 -13.92660 -13.76947 -13.54624 -13.49181 -13.19311 -13.08642 -12.97747 -12.87275 -12.78290 -12.63118 -12.43649 -12.04717 -11.95572 -11.75666 -11.39504 -11.05220 -10.75665 -10.62157 -10.42138 -10.13889 -9.23798 -8.98288 -8.70150 -8.03624 -6.28083 0.75459 1.10802 1.41143 1.43649 1.49657 1.66147 1.85356 2.00651 2.42701 2.84302 3.13343 3.20027 3.79799 4.03387 4.16637 4.21670 4.32482 4.39690 4.43634 4.45577 4.51971 4.53689 4.62873 4.76899 4.79324 4.83339 4.87408 5.00954 5.05258 5.12398 5.25593 5.35085 5.47817 5.69060 5.82974 5.88115 6.06692 6.29334 6.34464 6.48543 6.82746 6.89755 7.42103 7.62091 8.95565 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.011953 B = 0.006008 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.889046 B = 4658.966892 C = 6314.039454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.380 5.380 3 C 0.068 3.932 4 C -0.217 4.217 5 C 0.193 3.807 6 H 0.088 0.912 7 C -0.412 4.412 8 S 1.272 4.728 9 O -0.925 6.925 10 C -0.419 4.419 11 C 0.077 3.923 12 N -0.549 5.549 13 C 0.048 3.952 14 C 0.208 3.792 15 H 0.038 0.962 16 O -0.559 6.559 17 C -0.585 4.585 18 H 0.044 0.956 19 C 0.040 3.960 20 N -0.886 5.886 21 Si 0.939 3.061 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.276 1.276 25 C 0.053 3.947 26 N -0.336 5.336 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.198 0.802 31 H 0.128 0.872 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.136 0.864 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.346 0.654 40 H 0.260 0.740 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.359 0.192 9.031 9.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.163 5.163 3 C -0.079 4.079 4 C -0.230 4.230 5 C 0.083 3.917 6 H 0.106 0.894 7 C -0.551 4.551 8 S 1.474 4.526 9 O -0.920 6.920 10 C -0.558 4.558 11 C -0.052 4.052 12 N -0.273 5.273 13 C -0.080 4.080 14 C 0.149 3.851 15 H 0.056 0.944 16 O -0.364 6.364 17 C -0.623 4.623 18 H 0.062 0.938 19 C -0.164 4.164 20 N -0.523 5.523 21 Si 0.766 3.234 22 H -0.202 1.202 23 H -0.209 1.209 24 H -0.201 1.201 25 C -0.132 4.132 26 N -0.159 5.159 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.125 0.875 30 H 0.215 0.785 31 H 0.147 0.853 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.154 0.846 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.192 0.808 40 H 0.069 0.931 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -2.481 0.232 9.919 10.227 hybrid contribution 0.178 -1.842 -1.407 2.324 sum -2.303 -1.610 8.512 8.964 Atomic orbital electron populations 1.22112 0.72515 1.05460 1.04387 1.48667 1.07593 1.03298 1.56760 1.22652 0.90486 0.94156 1.00625 1.19774 0.94274 0.93158 1.15768 1.19367 0.86996 0.97265 0.88100 0.89449 1.27641 1.13780 1.11418 1.02266 1.69903 0.89156 1.09340 0.84188 1.92945 1.71175 1.84656 1.43266 1.27500 1.08777 1.08924 1.10645 1.21608 0.91714 0.95932 0.95915 1.61494 1.12042 1.40827 1.12947 1.22731 0.97932 0.98361 0.89016 1.19769 0.86972 0.90743 0.87603 0.94386 1.86423 1.27491 1.49238 1.73213 1.21965 1.41738 0.94344 1.04285 0.93818 1.25591 0.95506 0.94905 1.00360 1.70127 1.43251 1.01850 1.37064 0.85936 0.78740 0.77672 0.81073 1.20212 1.20889 1.20108 1.23710 0.94703 0.95489 0.99343 1.77235 1.02240 1.09951 1.26458 0.89250 0.89714 0.87474 0.78512 0.85349 0.90635 0.90211 0.84609 0.90542 0.92054 0.92493 0.91190 0.80771 0.93052 0.80781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.67 11.47 127.77 1.47 3.14 16 2 N -0.38 -10.17 4.01 -369.58 -1.48 -11.65 16 3 C 0.07 1.78 8.70 83.54 0.73 2.51 16 4 C -0.22 -6.33 2.81 -20.14 -0.06 -6.39 16 5 C 0.19 5.36 1.55 44.33 0.07 5.43 16 6 H 0.09 2.49 6.23 -2.38 -0.01 2.48 16 7 C -0.41 -10.21 5.93 72.06 0.43 -9.78 16 8 S 1.27 29.81 13.81 -56.49 -0.78 29.03 16 9 O -0.92 -32.83 18.14 -148.98 -2.70 -35.53 16 10 C -0.42 -9.90 6.67 72.06 0.48 -9.42 16 11 C 0.08 2.14 4.44 86.47 0.38 2.52 16 12 N -0.55 -16.83 4.37 -876.62 -3.83 -20.66 16 13 C 0.05 1.77 4.63 86.30 0.40 2.17 16 14 C 0.21 9.15 2.60 29.85 0.08 9.22 16 15 H 0.04 1.83 6.52 -2.39 -0.02 1.82 16 16 O -0.56 -23.26 8.85 -148.98 -1.32 -24.58 16 17 C -0.58 -29.77 8.70 25.60 0.22 -29.54 16 18 H 0.04 2.26 7.74 -2.91 -0.02 2.23 16 19 C 0.04 2.06 5.40 84.66 0.46 2.52 16 20 N -0.89 -47.70 12.84 21.45 0.28 -47.42 16 21 Si 0.94 41.26 29.54 68.60 2.03 43.29 16 22 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 24 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 25 C 0.05 1.68 9.70 85.24 0.83 2.50 16 26 N -0.34 -10.88 12.58 -57.03 -0.72 -11.60 16 27 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.20 4.23 8.03 -2.91 -0.02 4.21 16 31 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.08 2.20 7.91 -2.39 -0.02 2.18 16 36 H 0.06 1.70 6.98 -2.39 -0.02 1.68 16 37 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 38 H 0.07 2.71 4.93 -2.39 -0.01 2.70 16 39 H 0.35 14.13 6.29 -74.06 -0.47 13.66 16 40 H 0.26 13.47 8.31 -92.70 -0.77 12.70 16 41 H 0.18 5.33 8.06 -2.91 -0.02 5.30 16 Total: -1.00 -71.20 334.12 -2.47 -73.67 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: 0.58 Total: 30.58 kcal Atomic # 6 Polarization: -30.60 SS G_CDS: 5.48 Total: -25.12 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -5.76 Total: -91.33 kcal Atomic # 8 Polarization: -56.09 SS G_CDS: -4.02 Total: -60.11 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Atomic # 16 Polarization: 29.81 SS G_CDS: -0.78 Total: 29.03 kcal Total: -71.20 -2.47 -73.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412977613.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.796 kcal (2) G-P(sol) polarization free energy of solvation -71.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds