Wall clock time and date at job start Fri Apr 10 2020 18:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34952 * 126.03589 * 2 1 4 4 C 1.35319 * 107.74483 * 180.14870 * 3 2 1 5 5 C 1.50701 * 126.04147 * 179.87309 * 4 3 2 6 6 H 1.09001 * 109.33927 * 19.91590 * 5 4 3 7 7 C 1.53244 * 109.40563 * 260.10953 * 5 4 3 8 8 S 1.81908 * 108.50270 * 177.87432 * 7 5 4 9 9 O 1.42101 * 109.47091 * 295.46668 * 8 7 5 10 10 C 1.81898 * 101.91152 * 51.30745 * 8 7 5 11 11 C 1.53250 * 108.50667 * 308.69573 * 10 8 7 12 12 N 1.46464 * 109.40374 * 139.71073 * 5 4 3 13 13 C 1.46901 * 111.00836 * 317.88988 * 12 5 4 14 14 C 1.53000 * 109.46565 * 300.06825 * 13 12 5 15 15 H 1.08994 * 109.48028 * 59.99667 * 14 13 12 16 16 O 1.42907 * 109.47229 * 299.99055 * 14 13 12 17 17 C 1.50708 * 109.46973 * 179.97438 * 14 13 12 18 18 H 1.07991 * 119.99789 * 0.02562 * 17 14 13 19 19 C 1.37877 * 120.00008 * 179.97438 * 17 14 13 20 20 N 1.31514 * 120.00089 * 180.02562 * 19 17 14 21 21 Si 1.86798 * 119.99938 * 0.02562 * 19 17 14 22 22 H 1.48506 * 109.47297 * 269.99556 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99737 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99730 * 21 19 17 25 25 C 1.39872 * 107.91736 * 359.61055 * 4 3 2 26 26 N 1.30838 * 108.20398 * 0.24337 * 25 4 3 27 27 H 1.08992 * 109.47348 * 270.30699 * 1 2 3 28 28 H 1.08998 * 109.46847 * 30.31178 * 1 2 3 29 29 H 1.09007 * 109.46955 * 150.30687 * 1 2 3 30 30 H 1.07993 * 126.13003 * 0.02562 * 3 2 1 31 31 H 1.09004 * 109.62979 * 58.17636 * 7 5 4 32 32 H 1.08991 * 109.79870 * 297.67596 * 7 5 4 33 33 H 1.08995 * 109.62890 * 188.98708 * 10 8 7 34 34 H 1.09006 * 109.63181 * 68.39502 * 10 8 7 35 35 H 1.08999 * 109.40518 * 301.88273 * 11 10 8 36 36 H 1.09004 * 109.40563 * 182.12405 * 11 10 8 37 37 H 1.08996 * 109.47370 * 180.02562 * 13 12 5 38 38 H 1.08996 * 109.46858 * 60.05740 * 13 12 5 39 39 H 0.96700 * 114.00202 * 300.00949 * 16 14 13 40 40 H 0.96997 * 119.99848 * 180.02562 * 20 19 17 41 41 H 1.08008 * 125.89727 * 180.21878 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0033 5 6 4.7680 1.5453 -0.0073 6 1 4.4984 2.5416 0.3433 7 6 5.3224 1.6397 -1.4328 8 16 6.7597 2.7547 -1.4206 9 8 6.3386 4.0663 -1.0718 10 6 7.7619 2.0607 -0.0705 11 6 6.8715 1.9082 1.1674 12 7 5.7802 0.9735 0.8835 13 6 5.1708 0.4825 2.1267 14 6 4.4791 1.6412 2.8477 15 1 3.7052 2.0596 2.2043 16 8 5.4407 2.6526 3.1557 17 6 3.8533 1.1375 4.1229 18 1 3.9407 0.0954 4.3922 19 6 3.1703 2.0074 4.9461 20 7 2.6246 1.5680 6.0591 21 14 3.0199 3.8102 4.4805 22 1 4.1657 4.5653 5.0480 23 1 1.7498 4.3570 5.0220 24 1 3.0244 3.9416 3.0013 25 6 3.5346 -0.7321 0.0036 26 7 2.2891 -1.1327 0.0056 27 1 -0.3633 0.0055 1.0276 28 1 -0.3633 0.8872 -0.5187 29 1 -0.3633 -0.8928 -0.5091 30 1 1.9282 2.1193 0.0004 31 1 4.5561 2.0374 -2.0982 32 1 5.6285 0.6515 -1.7760 33 1 8.5895 2.7333 0.1542 34 1 8.1487 1.0852 -0.3657 35 1 6.4558 2.8793 1.4363 36 1 7.4673 1.5282 1.9974 37 1 5.9446 0.0636 2.7700 38 1 4.4374 -0.2888 1.8919 39 1 6.1604 2.3503 3.7264 40 1 2.1437 2.1799 6.6380 41 1 4.4054 -1.3710 0.0064 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412977615.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:30 Heat of formation + Delta-G solvation = 18.659057 kcal Electronic energy + Delta-G solvation = -25825.986259 eV Core-core repulsion = 22256.402221 eV Total energy + Delta-G solvation = -3569.584038 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.11077 -38.52438 -35.51577 -35.36774 -33.21430 -32.32445 -31.79668 -30.78632 -29.12407 -27.68250 -26.45578 -24.29560 -23.30804 -21.82482 -20.74454 -20.50447 -19.20710 -17.52310 -17.38741 -16.49415 -15.59365 -15.41210 -15.13448 -14.95773 -14.80298 -14.73112 -14.24665 -14.05574 -13.65855 -13.48645 -13.30310 -12.85904 -12.77696 -12.57929 -12.46953 -12.22389 -11.85571 -11.66256 -11.50368 -11.32160 -11.03833 -10.95340 -10.65373 -10.51873 -10.34433 -9.99274 -9.64125 -9.50846 -9.06272 -8.84959 -8.69841 -8.33390 -7.82717 -7.44085 -6.17435 -4.28023 1.82255 2.17041 2.65269 2.80188 3.10117 3.37860 3.42420 3.55934 3.93036 4.28422 4.44705 4.71372 5.07685 5.09532 5.13981 5.18256 5.24423 5.31757 5.36295 5.50533 5.53317 5.56777 5.62300 5.74444 5.75858 6.01422 6.07296 6.14499 6.18241 6.27150 6.39133 6.53745 6.77726 6.92993 7.18484 7.23939 7.30543 7.58610 7.65666 7.99123 8.22835 8.76451 8.92410 9.46667 10.92989 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.010579 B = 0.007438 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.036113 B = 3763.368329 C = 5342.116392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.376 5.376 3 C 0.062 3.938 4 C -0.218 4.218 5 C 0.170 3.830 6 H 0.052 0.948 7 C -0.417 4.417 8 S 1.217 4.783 9 O -0.855 6.855 10 C -0.431 4.431 11 C 0.055 3.945 12 N -0.541 5.541 13 C 0.041 3.959 14 C 0.161 3.839 15 H 0.060 0.940 16 O -0.586 6.586 17 C -0.554 4.554 18 H 0.073 0.927 19 C 0.082 3.918 20 N -0.892 5.892 21 Si 0.912 3.088 22 H -0.278 1.278 23 H -0.306 1.306 24 H -0.272 1.272 25 C 0.074 3.926 26 N -0.301 5.301 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.166 0.834 31 H 0.104 0.896 32 H 0.123 0.877 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.359 0.641 40 H 0.264 0.736 41 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.666 -2.631 -18.537 19.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.158 5.158 3 C -0.085 4.085 4 C -0.231 4.231 5 C 0.060 3.940 6 H 0.069 0.931 7 C -0.555 4.555 8 S 1.417 4.583 9 O -0.850 6.850 10 C -0.570 4.570 11 C -0.074 4.074 12 N -0.265 5.265 13 C -0.087 4.087 14 C 0.103 3.897 15 H 0.078 0.922 16 O -0.393 6.393 17 C -0.592 4.592 18 H 0.091 0.909 19 C -0.122 4.122 20 N -0.530 5.530 21 Si 0.742 3.258 22 H -0.204 1.204 23 H -0.234 1.234 24 H -0.197 1.197 25 C -0.113 4.113 26 N -0.122 5.122 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.183 0.817 31 H 0.122 0.878 32 H 0.142 0.858 33 H 0.122 0.878 34 H 0.138 0.862 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.206 0.794 40 H 0.074 0.926 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 4.603 -2.812 -19.597 20.326 hybrid contribution -0.837 1.890 2.843 3.515 sum 3.767 -0.922 -16.754 17.197 Atomic orbital electron populations 1.21795 0.74615 1.03796 1.03540 1.48270 1.06343 1.03727 1.57479 1.22175 0.91018 0.93224 1.02055 1.19700 0.93205 0.94125 1.16028 1.19534 0.88409 0.95380 0.90721 0.93054 1.27673 1.14188 1.12916 1.00729 1.69895 0.95654 0.84193 1.08599 1.93145 1.81016 1.28072 1.82809 1.27618 1.08147 1.09547 1.11658 1.22087 0.92087 0.97712 0.95514 1.61541 1.10542 1.37961 1.16421 1.22871 0.98707 0.98925 0.88156 1.20537 0.87744 0.85722 0.95671 0.92234 1.86424 1.39502 1.42581 1.70777 1.21477 1.35249 0.97537 1.04973 0.90903 1.25011 0.93470 0.99388 0.94315 1.69964 1.34867 1.35893 1.12255 0.86282 0.75940 0.84525 0.79024 1.20441 1.23431 1.19734 1.23599 0.94798 0.94282 0.98623 1.77296 1.01687 1.08250 1.25014 0.90649 0.89907 0.89578 0.81716 0.87789 0.85818 0.87804 0.86197 0.91015 0.90627 0.91368 0.89513 0.79416 0.92616 0.79991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.18 11.47 59.85 0.69 1.87 16 2 N -0.38 -5.95 4.01 -68.16 -0.27 -6.23 16 3 C 0.06 1.01 11.17 -17.22 -0.19 0.82 16 4 C -0.22 -3.61 3.21 -105.05 -0.34 -3.94 16 5 C 0.17 2.77 1.59 -68.98 -0.11 2.66 16 6 H 0.05 1.05 7.10 -51.93 -0.37 0.68 16 7 C -0.42 -4.89 5.93 37.28 0.22 -4.67 16 8 S 1.22 13.26 13.81 -107.50 -1.48 11.77 16 9 O -0.86 -15.66 18.14 -35.23 -0.64 -16.30 16 10 C -0.43 -4.80 6.67 37.29 0.25 -4.55 16 11 C 0.05 0.86 4.04 -3.93 -0.02 0.84 16 12 N -0.54 -8.74 4.36 -228.44 -1.00 -9.74 16 13 C 0.04 0.79 4.51 -3.82 -0.02 0.77 16 14 C 0.16 3.81 1.93 -27.88 -0.05 3.75 16 15 H 0.06 1.53 5.14 -51.93 -0.27 1.26 16 16 O -0.59 -13.52 7.69 -35.23 -0.27 -13.79 16 17 C -0.55 -15.60 9.34 -34.44 -0.32 -15.92 16 18 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 19 C 0.08 2.43 5.47 -17.82 -0.10 2.33 16 20 N -0.89 -27.60 13.96 55.43 0.77 -26.83 16 21 Si 0.91 24.21 26.18 -169.99 -4.45 19.76 16 22 H -0.28 -7.44 7.11 56.52 0.40 -7.03 16 23 H -0.31 -8.03 7.11 56.52 0.40 -7.63 16 24 H -0.27 -7.29 6.54 56.52 0.37 -6.92 16 25 C 0.07 1.19 9.41 -17.36 -0.16 1.03 16 26 N -0.30 -5.20 12.58 30.63 0.39 -4.81 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 30 H 0.17 2.45 8.06 -52.49 -0.42 2.03 16 31 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.41 5.94 -51.93 -0.31 1.10 16 36 H 0.08 1.15 7.64 -51.93 -0.40 0.75 16 37 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 38 H 0.09 1.76 5.00 -51.93 -0.26 1.50 16 39 H 0.36 7.36 8.78 45.56 0.40 7.76 16 40 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 41 H 0.18 2.57 8.04 -52.48 -0.42 2.14 16 LS Contribution 333.14 15.07 5.02 5.02 Total: -1.00 -39.51 333.14 -7.09 -46.60 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -5.00 Total: 9.56 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -0.15 Total: -15.02 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.11 Total: -47.60 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.91 Total: -30.09 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -4.45 Total: 19.76 kcal Atomic # 16 Polarization: 13.26 SS G_CDS: -1.48 Total: 11.77 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -39.51 -7.09 -46.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412977615.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.255 kcal (2) G-P(sol) polarization free energy of solvation -39.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds