Wall clock time and date at job start Fri Apr 10 2020 18:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34952 * 126.03589 * 2 1 4 4 C 1.35319 * 107.74483 * 180.14870 * 3 2 1 5 5 C 1.50701 * 126.04147 * 179.87309 * 4 3 2 6 6 H 1.09001 * 109.33927 * 19.91590 * 5 4 3 7 7 C 1.53244 * 109.40563 * 260.10953 * 5 4 3 8 8 S 1.81908 * 108.50270 * 177.87432 * 7 5 4 9 9 O 1.42101 * 109.47091 * 295.46668 * 8 7 5 10 10 C 1.81898 * 101.91152 * 51.30745 * 8 7 5 11 11 C 1.53250 * 108.50667 * 308.69573 * 10 8 7 12 12 N 1.46464 * 109.40374 * 139.71073 * 5 4 3 13 13 C 1.46901 * 111.00836 * 317.88988 * 12 5 4 14 14 C 1.53000 * 109.46565 * 300.06825 * 13 12 5 15 15 H 1.08994 * 109.48028 * 59.99667 * 14 13 12 16 16 O 1.42907 * 109.47229 * 299.99055 * 14 13 12 17 17 C 1.50708 * 109.46973 * 179.97438 * 14 13 12 18 18 H 1.07991 * 119.99789 * 0.02562 * 17 14 13 19 19 C 1.37877 * 120.00008 * 179.97438 * 17 14 13 20 20 N 1.31514 * 120.00089 * 180.02562 * 19 17 14 21 21 Si 1.86798 * 119.99938 * 0.02562 * 19 17 14 22 22 H 1.48506 * 109.47297 * 269.99556 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99737 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99730 * 21 19 17 25 25 C 1.39872 * 107.91736 * 359.61055 * 4 3 2 26 26 N 1.30838 * 108.20398 * 0.24337 * 25 4 3 27 27 H 1.08992 * 109.47348 * 270.30699 * 1 2 3 28 28 H 1.08998 * 109.46847 * 30.31178 * 1 2 3 29 29 H 1.09007 * 109.46955 * 150.30687 * 1 2 3 30 30 H 1.07993 * 126.13003 * 0.02562 * 3 2 1 31 31 H 1.09004 * 109.62979 * 58.17636 * 7 5 4 32 32 H 1.08991 * 109.79870 * 297.67596 * 7 5 4 33 33 H 1.08995 * 109.62890 * 188.98708 * 10 8 7 34 34 H 1.09006 * 109.63181 * 68.39502 * 10 8 7 35 35 H 1.08999 * 109.40518 * 301.88273 * 11 10 8 36 36 H 1.09004 * 109.40563 * 182.12405 * 11 10 8 37 37 H 1.08996 * 109.47370 * 180.02562 * 13 12 5 38 38 H 1.08996 * 109.46858 * 60.05740 * 13 12 5 39 39 H 0.96700 * 114.00202 * 300.00949 * 16 14 13 40 40 H 0.96997 * 119.99848 * 180.02562 * 20 19 17 41 41 H 1.08008 * 125.89727 * 180.21878 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0033 5 6 4.7680 1.5453 -0.0073 6 1 4.4984 2.5416 0.3433 7 6 5.3224 1.6397 -1.4328 8 16 6.7597 2.7547 -1.4206 9 8 6.3386 4.0663 -1.0718 10 6 7.7619 2.0607 -0.0705 11 6 6.8715 1.9082 1.1674 12 7 5.7802 0.9735 0.8835 13 6 5.1708 0.4825 2.1267 14 6 4.4791 1.6412 2.8477 15 1 3.7052 2.0596 2.2043 16 8 5.4407 2.6526 3.1557 17 6 3.8533 1.1375 4.1229 18 1 3.9407 0.0954 4.3922 19 6 3.1703 2.0074 4.9461 20 7 2.6246 1.5680 6.0591 21 14 3.0199 3.8102 4.4805 22 1 4.1657 4.5653 5.0480 23 1 1.7498 4.3570 5.0220 24 1 3.0244 3.9416 3.0013 25 6 3.5346 -0.7321 0.0036 26 7 2.2891 -1.1327 0.0056 27 1 -0.3633 0.0055 1.0276 28 1 -0.3633 0.8872 -0.5187 29 1 -0.3633 -0.8928 -0.5091 30 1 1.9282 2.1193 0.0004 31 1 4.5561 2.0374 -2.0982 32 1 5.6285 0.6515 -1.7760 33 1 8.5895 2.7333 0.1542 34 1 8.1487 1.0852 -0.3657 35 1 6.4558 2.8793 1.4363 36 1 7.4673 1.5282 1.9974 37 1 5.9446 0.0636 2.7700 38 1 4.4374 -0.2888 1.8919 39 1 6.1604 2.3503 3.7264 40 1 2.1437 2.1799 6.6380 41 1 4.4054 -1.3710 0.0064 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412977615.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:29 Heat of formation + Delta-G solvation = -15.864802 kcal Electronic energy + Delta-G solvation = -25827.483325 eV Core-core repulsion = 22256.402221 eV Total energy + Delta-G solvation = -3571.081105 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.36008 -40.00434 -37.18590 -36.66076 -34.63058 -34.28959 -32.97423 -32.26428 -30.30095 -29.44495 -27.52499 -26.00739 -24.50637 -23.36217 -22.16389 -21.83248 -20.55420 -19.52122 -18.51799 -17.73651 -17.11767 -16.92366 -16.59044 -16.42021 -16.25196 -15.97304 -15.76925 -15.21830 -15.19391 -15.09610 -14.60785 -14.45836 -13.98012 -13.84050 -13.67874 -13.47427 -13.27712 -13.12144 -12.95195 -12.93457 -12.64844 -12.47080 -12.12753 -12.05689 -11.92364 -11.66574 -11.48627 -11.00940 -10.83816 -10.74353 -10.30806 -9.50959 -9.07199 -8.87451 -8.48192 -6.60308 0.89051 0.93215 1.21216 1.24527 1.39520 1.66226 1.72653 1.89952 2.21531 2.81039 2.86873 3.09418 3.62575 3.82475 3.90932 4.00872 4.03367 4.20126 4.24535 4.31536 4.37419 4.43788 4.45691 4.56493 4.61966 4.62573 4.72967 4.84188 5.03673 5.06837 5.16077 5.24977 5.30008 5.35636 5.38591 5.71831 5.91222 6.01805 6.07990 6.20529 6.52194 6.75129 7.00986 7.19551 8.65829 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.010579 B = 0.007438 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.036113 B = 3763.368329 C = 5342.116392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.379 5.379 3 C 0.045 3.955 4 C -0.229 4.229 5 C 0.169 3.831 6 H 0.004 0.996 7 C -0.414 4.414 8 S 1.290 4.710 9 O -0.930 6.930 10 C -0.425 4.425 11 C 0.047 3.953 12 N -0.516 5.516 13 C 0.053 3.947 14 C 0.173 3.827 15 H 0.040 0.960 16 O -0.589 6.589 17 C -0.552 4.552 18 H 0.043 0.957 19 C 0.037 3.963 20 N -0.932 5.932 21 Si 0.967 3.033 22 H -0.277 1.277 23 H -0.299 1.299 24 H -0.279 1.279 25 C 0.073 3.927 26 N -0.326 5.326 27 H 0.068 0.932 28 H 0.111 0.889 29 H 0.102 0.898 30 H 0.172 0.828 31 H 0.111 0.889 32 H 0.161 0.839 33 H 0.118 0.882 34 H 0.162 0.838 35 H 0.030 0.970 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.371 0.629 40 H 0.268 0.732 41 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.120 -3.162 -20.670 22.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.161 5.161 3 C -0.103 4.103 4 C -0.242 4.242 5 C 0.059 3.941 6 H 0.022 0.978 7 C -0.552 4.552 8 S 1.491 4.509 9 O -0.926 6.926 10 C -0.564 4.564 11 C -0.081 4.081 12 N -0.239 5.239 13 C -0.075 4.075 14 C 0.114 3.886 15 H 0.058 0.942 16 O -0.397 6.397 17 C -0.590 4.590 18 H 0.061 0.939 19 C -0.163 4.163 20 N -0.572 5.572 21 Si 0.797 3.203 22 H -0.203 1.203 23 H -0.227 1.227 24 H -0.205 1.205 25 C -0.113 4.113 26 N -0.147 5.147 27 H 0.087 0.913 28 H 0.130 0.870 29 H 0.121 0.879 30 H 0.190 0.810 31 H 0.130 0.870 32 H 0.179 0.821 33 H 0.136 0.864 34 H 0.180 0.820 35 H 0.048 0.952 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.219 0.781 40 H 0.077 0.923 41 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 6.058 -3.339 -21.745 22.818 hybrid contribution -1.294 1.989 3.544 4.265 sum 4.764 -1.350 -18.201 18.862 Atomic orbital electron populations 1.22126 0.72495 1.06137 1.03801 1.48613 1.07662 1.03107 1.56735 1.22468 0.91615 0.93880 1.02300 1.19836 0.93363 0.94492 1.16510 1.19568 0.88809 0.92741 0.93024 0.97763 1.27736 1.14568 1.15203 0.97735 1.69080 0.93732 0.81192 1.06939 1.93010 1.82275 1.33089 1.84241 1.27653 1.07610 1.12229 1.08921 1.22139 0.92367 0.95238 0.98394 1.61681 1.10139 1.37789 1.14314 1.22604 0.98522 0.96999 0.89387 1.20315 0.87839 0.86918 0.93487 0.94229 1.86396 1.39683 1.42465 1.71159 1.21791 1.34707 0.96091 1.06412 0.93919 1.25655 0.93635 1.02630 0.94381 1.70055 1.36443 1.37192 1.13480 0.85413 0.76081 0.80793 0.78052 1.20333 1.22692 1.20511 1.23879 0.95133 0.94192 0.98056 1.77233 1.02388 1.09288 1.25819 0.91348 0.87037 0.87912 0.81044 0.87049 0.82093 0.86364 0.82026 0.95220 0.89952 0.90784 0.90115 0.78064 0.92331 0.78090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.05 11.47 127.77 1.47 3.52 16 2 N -0.38 -11.76 4.01 -369.57 -1.48 -13.24 16 3 C 0.04 1.45 11.17 83.54 0.93 2.39 16 4 C -0.23 -7.40 3.21 -20.14 -0.06 -7.47 16 5 C 0.17 5.32 1.59 44.33 0.07 5.39 16 6 H 0.00 0.18 7.10 -2.39 -0.02 0.16 16 7 C -0.41 -8.59 5.93 72.06 0.43 -8.16 16 8 S 1.29 24.84 13.81 -56.49 -0.78 24.06 16 9 O -0.93 -33.59 18.14 -148.98 -2.70 -36.29 16 10 C -0.43 -7.89 6.67 72.07 0.48 -7.41 16 11 C 0.05 1.39 4.04 86.47 0.35 1.74 16 12 N -0.52 -15.76 4.36 -876.64 -3.82 -19.58 16 13 C 0.05 2.03 4.51 86.30 0.39 2.42 16 14 C 0.17 8.23 1.93 29.85 0.06 8.28 16 15 H 0.04 2.08 5.14 -2.39 -0.01 2.06 16 16 O -0.59 -27.16 7.69 -148.98 -1.15 -28.31 16 17 C -0.55 -31.60 9.34 25.60 0.24 -31.36 16 18 H 0.04 2.66 7.99 -2.92 -0.02 2.64 16 19 C 0.04 2.23 5.47 84.65 0.46 2.69 16 20 N -0.93 -58.64 13.96 21.45 0.30 -58.35 16 21 Si 0.97 50.79 26.18 68.60 1.80 52.59 16 22 H -0.28 -14.43 7.11 99.48 0.71 -13.73 16 23 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 24 H -0.28 -14.91 6.54 99.48 0.65 -14.26 16 25 C 0.07 2.27 9.41 85.24 0.80 3.07 16 26 N -0.33 -10.94 12.58 -57.02 -0.72 -11.66 16 27 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.17 5.17 8.06 -2.91 -0.02 5.15 16 31 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.16 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.12 1.98 8.14 -2.39 -0.02 1.97 16 34 H 0.16 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.03 1.15 5.94 -2.39 -0.01 1.14 16 36 H 0.08 2.30 7.64 -2.38 -0.02 2.28 16 37 H 0.07 2.75 7.93 -2.39 -0.02 2.73 16 38 H 0.08 3.23 5.00 -2.39 -0.01 3.21 16 39 H 0.37 15.03 8.78 -74.06 -0.65 14.38 16 40 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 41 H 0.20 5.18 8.04 -2.91 -0.02 5.15 16 Total: -1.00 -88.43 333.14 -2.59 -91.02 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.35 Total: 24.66 kcal Atomic # 6 Polarization: -30.51 SS G_CDS: 5.61 Total: -24.90 kcal Atomic # 7 Polarization: -97.11 SS G_CDS: -5.72 Total: -102.83 kcal Atomic # 8 Polarization: -60.75 SS G_CDS: -3.85 Total: -64.60 kcal Atomic # 14 Polarization: 50.79 SS G_CDS: 1.80 Total: 52.59 kcal Atomic # 16 Polarization: 24.84 SS G_CDS: -0.78 Total: 24.06 kcal Total: -88.43 -2.59 -91.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412977615.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.156 kcal (2) G-P(sol) polarization free energy of solvation -88.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds