Wall clock time and date at job start Fri Apr 10 2020 18:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47348 * 2 1 4 4 N 1.29028 * 124.92081 * 90.00000 * 3 2 1 5 5 C 1.31781 * 117.12363 * 180.02562 * 4 3 2 6 6 C 1.50697 * 122.74346 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47650 * 305.02456 * 6 5 4 8 8 O 1.21280 * 119.99825 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00252 * 180.02562 * 7 6 5 10 10 C 1.46501 * 119.99681 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47085 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46812 * 64.99732 * 11 10 9 13 13 C 1.52997 * 109.47452 * 184.99949 * 11 10 9 14 14 O 1.42906 * 109.47007 * 54.99567 * 13 11 10 15 15 N 1.46506 * 109.46831 * 305.00177 * 11 10 9 16 16 C 1.36936 * 119.99838 * 154.99889 * 15 11 10 17 17 H 1.07999 * 120.00085 * 0.02562 * 16 15 11 18 18 C 1.38815 * 119.99824 * 179.97438 * 16 15 11 19 19 N 1.31616 * 119.99954 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99939 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47040 * 60.00288 * 20 18 16 22 22 H 1.48506 * 109.47344 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47287 * 300.00283 * 20 18 16 24 24 C 1.33632 * 114.50186 * 0.22835 * 5 4 3 25 25 S 1.70982 * 124.91254 * 270.00314 * 3 2 1 26 26 H 1.09000 * 109.47696 * 60.00066 * 1 2 3 27 27 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46855 * 300.00087 * 1 2 3 29 29 H 1.09005 * 109.46855 * 239.99913 * 2 1 3 30 30 H 1.09000 * 109.47696 * 119.99934 * 2 1 3 31 31 H 1.09000 * 109.47144 * 185.02042 * 6 5 4 32 32 H 1.09001 * 109.47374 * 65.02486 * 6 5 4 33 33 H 0.96998 * 120.00301 * 359.97438 * 9 7 6 34 34 H 1.09000 * 109.47818 * 59.99929 * 10 9 7 35 35 H 1.09001 * 109.47363 * 299.99334 * 10 9 7 36 36 H 1.08998 * 109.47192 * 174.99730 * 13 11 10 37 37 H 1.09000 * 109.46875 * 295.00133 * 13 11 10 38 38 H 0.96700 * 113.99791 * 179.97438 * 14 13 11 39 39 H 0.97000 * 119.99812 * 334.99233 * 15 11 10 40 40 H 0.97000 * 120.00432 * 179.97438 * 19 18 16 41 41 H 1.08007 * 126.03588 * 179.76658 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2786 2.1171 1.0580 5 6 2.7133 3.3483 0.8792 6 6 3.0393 4.2719 2.0244 7 6 1.8445 4.3830 2.9360 8 8 0.8281 3.7726 2.6806 9 7 1.9050 5.1615 4.0345 10 6 0.7432 5.2699 4.9204 11 6 1.0738 6.2086 6.0825 12 1 1.2398 7.2158 5.7001 13 6 -0.0925 6.2249 7.0727 14 8 -0.3857 4.8885 7.4853 15 7 2.2840 5.7383 6.7611 16 6 3.0627 6.6202 7.4618 17 1 2.7845 7.6624 7.5145 18 6 4.2091 6.1745 8.1052 19 7 4.5479 4.9043 8.0413 20 14 5.2717 7.3776 9.0604 21 1 4.4678 7.9942 10.1461 22 1 6.4290 6.6568 9.6490 23 1 5.7635 8.4386 8.1450 24 6 2.8364 3.7122 -0.4007 25 16 2.3585 2.3434 -1.4021 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.2922 5.2581 1.6351 32 1 3.8864 3.8736 2.5827 33 1 2.7178 5.6501 4.2386 34 1 0.4901 4.2839 5.3100 35 1 -0.1038 5.6683 4.3618 36 1 0.1780 6.8228 7.9429 37 1 -0.9703 6.6578 6.5929 38 1 -1.1163 4.8228 8.1153 39 1 2.5336 4.8021 6.7141 40 1 5.3492 4.5928 8.4905 41 1 3.1715 4.6747 -0.7583 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486065728.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:44 Heat of formation + Delta-G solvation = -65.273804 kcal Electronic energy + Delta-G solvation = -23458.713446 eV Core-core repulsion = 19885.489807 eV Total energy + Delta-G solvation = -3573.223640 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.125 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.29735 -40.11105 -38.55277 -36.37663 -35.22482 -35.11263 -33.23149 -32.13504 -30.18801 -29.06661 -26.60832 -26.08292 -25.54587 -22.98412 -21.62191 -21.36539 -20.60391 -19.45707 -18.71237 -18.17241 -17.81716 -17.28523 -16.49861 -16.42142 -16.16657 -15.79302 -15.41390 -15.22306 -15.15791 -14.92411 -14.67160 -14.34469 -14.21801 -13.91599 -13.77087 -13.29098 -13.07555 -12.91993 -12.70849 -12.61562 -12.53872 -12.36697 -12.26179 -12.01806 -11.89309 -11.71916 -11.03123 -10.83552 -10.72750 -10.46793 -10.28746 -9.95041 -9.61976 -8.99936 -7.88469 -5.18236 -0.20871 0.48311 0.77267 1.50988 1.52864 1.58988 1.73581 1.77809 2.46424 2.59309 3.12566 3.43436 3.61242 3.76448 3.90912 4.00854 4.10325 4.12345 4.21905 4.31521 4.35121 4.45520 4.51055 4.56353 4.60920 4.65958 4.76463 4.89055 4.94578 4.99743 5.05779 5.17522 5.24347 5.31612 5.53795 5.58932 6.29532 6.66516 6.92794 7.05619 7.34990 7.37666 8.09990 8.35898 9.34064 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.016741 B = 0.002980 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.156435 B = 9393.110324 C =10183.019618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.048 4.048 3 C 0.033 3.967 4 N -0.491 5.491 5 C 0.063 3.937 6 C -0.064 4.064 7 C 0.511 3.489 8 O -0.575 6.575 9 N -0.713 5.713 10 C 0.133 3.867 11 C 0.162 3.838 12 H 0.082 0.918 13 C 0.063 3.937 14 O -0.585 6.585 15 N -0.722 5.722 16 C -0.238 4.238 17 H 0.082 0.918 18 C -0.072 4.072 19 N -0.967 5.967 20 Si 0.970 3.030 21 H -0.283 1.283 22 H -0.303 1.303 23 H -0.273 1.273 24 C -0.256 4.256 25 S 0.154 5.846 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.032 0.968 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.145 0.855 32 H 0.112 0.888 33 H 0.411 0.589 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.065 0.935 38 H 0.385 0.615 39 H 0.372 0.628 40 H 0.248 0.752 41 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.218 -2.164 -19.891 20.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 C -0.245 4.245 4 N -0.206 5.206 5 C -0.069 4.069 6 C -0.106 4.106 7 C 0.298 3.702 8 O -0.455 6.455 9 N -0.365 5.365 10 C 0.008 3.992 11 C 0.053 3.947 12 H 0.099 0.901 13 C -0.018 4.018 14 O -0.392 6.392 15 N -0.362 5.362 16 C -0.369 4.369 17 H 0.100 0.900 18 C -0.264 4.264 19 N -0.617 5.617 20 Si 0.800 3.200 21 H -0.209 1.209 22 H -0.230 1.230 23 H -0.199 1.199 24 C -0.395 4.395 25 S 0.409 5.591 26 H 0.082 0.918 27 H 0.108 0.892 28 H 0.051 0.949 29 H 0.132 0.868 30 H 0.103 0.897 31 H 0.163 0.837 32 H 0.130 0.870 33 H 0.247 0.753 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.056 0.944 37 H 0.083 0.917 38 H 0.233 0.767 39 H 0.203 0.797 40 H 0.057 0.943 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -6.521 -2.980 -20.978 22.170 hybrid contribution 0.787 1.041 2.414 2.744 sum -5.734 -1.939 -18.564 19.526 Atomic orbital electron populations 1.21724 0.93309 1.03411 1.01564 1.20362 0.96909 0.86525 1.05074 1.27545 1.02960 1.02866 0.91169 1.65987 1.14386 1.06939 1.33284 1.19778 1.01563 0.91332 0.94242 1.20297 0.96525 1.00886 0.92895 1.20836 0.89671 0.78034 0.81678 1.90662 1.34202 1.46163 1.74459 1.45946 1.17763 1.48395 1.24372 1.21284 0.88102 0.99624 0.90146 1.20842 0.86589 0.96977 0.90269 0.90050 1.22904 0.97661 0.83330 0.97863 1.86538 1.57767 1.28354 1.66492 1.42484 1.24744 1.08462 1.60539 1.19586 1.02293 0.91686 1.23364 0.90001 1.25505 1.00545 0.97419 1.02948 1.69847 1.27150 1.15203 1.49523 0.85267 0.77941 0.78088 0.78705 1.20926 1.22992 1.19920 1.27144 1.11529 1.05824 0.95026 1.83465 1.59890 1.04461 1.11263 0.91833 0.89241 0.94919 0.86759 0.89736 0.83729 0.86979 0.75261 0.93931 0.90882 0.94432 0.91727 0.76738 0.79670 0.94315 0.77607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.89 71.98 0.71 -1.93 16 2 C -0.05 -0.92 6.52 29.85 0.19 -0.73 16 3 C 0.03 0.84 6.64 88.52 0.59 1.43 16 4 N -0.49 -16.12 9.68 -179.41 -1.74 -17.86 16 5 C 0.06 1.80 5.63 41.52 0.23 2.03 16 6 C -0.06 -1.73 6.19 29.10 0.18 -1.55 16 7 C 0.51 18.12 7.79 87.66 0.68 18.80 16 8 O -0.58 -24.84 15.44 -3.03 -0.05 -24.89 16 9 N -0.71 -24.82 5.39 -463.05 -2.49 -27.31 16 10 C 0.13 4.88 5.12 86.38 0.44 5.32 16 11 C 0.16 6.07 2.84 44.99 0.13 6.20 16 12 H 0.08 2.79 8.08 -2.39 -0.02 2.77 16 13 C 0.06 2.12 6.86 71.98 0.49 2.62 16 14 O -0.58 -21.12 12.64 -148.98 -1.88 -23.00 16 15 N -0.72 -34.63 4.51 -322.92 -1.46 -36.08 16 16 C -0.24 -12.33 9.93 84.03 0.83 -11.50 16 17 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 18 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 19 N -0.97 -58.30 13.06 21.65 0.28 -58.02 16 20 Si 0.97 44.57 29.55 68.60 2.03 46.60 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 24 C -0.26 -5.48 11.07 66.77 0.74 -4.75 16 25 S 0.15 2.93 23.18 -56.49 -1.31 1.62 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.14 2.67 8.03 -2.39 -0.02 2.65 16 32 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 33 H 0.41 13.90 8.14 -92.71 -0.75 13.14 16 34 H 0.04 1.84 7.39 -2.39 -0.02 1.82 16 35 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.38 9.82 9.12 -74.06 -0.68 9.15 16 39 H 0.37 20.37 7.80 -92.71 -0.72 19.65 16 40 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 41 H 0.21 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -76.70 364.79 -2.00 -78.70 By element: Atomic # 1 Polarization: 48.83 SS G_CDS: -1.08 Total: 47.75 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 5.70 Total: 12.48 kcal Atomic # 7 Polarization: -133.86 SS G_CDS: -5.40 Total: -139.26 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -1.93 Total: -47.89 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -1.31 Total: 1.62 kcal Total: -76.70 -2.00 -78.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486065728.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.430 kcal (2) G-P(sol) polarization free energy of solvation -76.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds